Wall clock time and date at job start Mon Mar 30 2020 07:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31784 * 122.74936 * 2 1 4 4 C 1.29025 * 117.12258 * 179.72958 * 3 2 1 5 5 C 1.50705 * 124.91168 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.46697 * 90.00078 * 5 4 3 7 7 N 1.46902 * 109.46912 * 180.02562 * 6 5 4 8 8 C 1.46901 * 111.00096 * 180.02562 * 7 6 5 9 9 H 1.08999 * 109.46870 * 324.99148 * 8 7 6 10 10 C 1.52993 * 109.47413 * 84.99589 * 8 7 6 11 11 C 1.50702 * 109.47001 * 204.99784 * 8 7 6 12 12 H 1.07999 * 119.99757 * 359.97438 * 11 8 7 13 13 C 1.37874 * 119.99815 * 179.97438 * 11 8 7 14 14 N 1.31515 * 120.00390 * 0.02562 * 13 11 8 15 15 Si 1.86799 * 119.99886 * 179.97438 * 13 11 8 16 16 H 1.48497 * 109.47431 * 60.00194 * 15 13 11 17 17 H 1.48504 * 109.47091 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47342 * 300.00103 * 15 13 11 19 19 S 1.70968 * 110.17021 * 359.97438 * 4 3 2 20 20 C 1.33641 * 122.75115 * 179.70289 * 2 1 3 21 21 C 1.50700 * 126.03597 * 0.25055 * 20 2 1 22 22 H 1.08994 * 109.47218 * 90.03005 * 1 2 3 23 23 H 1.09007 * 109.46702 * 210.02827 * 1 2 3 24 24 H 1.08999 * 109.46968 * 330.02330 * 1 2 3 25 25 H 1.08994 * 109.47279 * 209.99791 * 5 4 3 26 26 H 1.09001 * 109.47408 * 330.00386 * 5 4 3 27 27 H 1.09005 * 109.47501 * 299.99332 * 6 5 4 28 28 H 1.08989 * 109.47322 * 60.00086 * 6 5 4 29 29 H 1.00897 * 111.00070 * 56.04450 * 7 6 5 30 30 H 1.08994 * 109.47254 * 179.97438 * 10 8 7 31 31 H 1.08997 * 109.47414 * 300.00230 * 10 8 7 32 32 H 1.09010 * 109.47009 * 60.00049 * 10 8 7 33 33 H 0.96993 * 120.00140 * 179.97438 * 14 13 11 34 34 H 1.09004 * 109.47176 * 90.00027 * 21 20 2 35 35 H 1.09000 * 109.46916 * 209.99905 * 21 20 2 36 36 H 1.08999 * 109.47044 * 329.99869 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 0.0054 5 6 4.4835 2.1272 0.0058 6 6 4.8092 2.5190 1.4485 7 7 5.7636 3.6358 1.4490 8 6 6.1008 4.0396 2.8206 9 1 5.2244 3.9258 3.4586 10 6 7.2338 3.1571 3.3480 11 6 6.5422 5.4805 2.8258 12 1 6.5699 6.0401 1.9026 13 6 6.9107 6.0842 4.0093 14 7 6.8775 5.4026 5.1335 15 14 7.4586 7.8701 4.0158 16 1 6.3596 8.7269 3.5030 17 1 7.7994 8.2783 5.4023 18 1 8.6531 8.0246 3.1470 19 16 3.9332 -0.6730 0.0121 20 6 2.2300 -1.1239 0.0058 21 6 1.6847 -2.5288 0.0078 22 1 -0.3633 -0.0005 -1.0276 23 1 -0.3633 -0.8898 0.5143 24 1 -0.3633 0.8902 0.5135 25 1 5.3979 1.8233 -0.5034 26 1 4.0453 2.9803 -0.5122 27 1 3.8947 2.8230 1.9579 28 1 5.2474 1.6661 1.9666 29 1 5.4065 4.4168 0.9192 30 1 7.4843 3.4570 4.3655 31 1 6.9146 2.1150 3.3442 32 1 8.1102 3.2710 2.7099 33 1 7.1371 5.8272 5.9660 34 1 1.5570 -2.8705 -1.0194 35 1 2.3811 -3.1881 0.5260 36 1 0.7217 -2.5441 0.5181 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308854702.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:17 Heat of formation + Delta-G solvation = 24.487207 kcal Electronic energy + Delta-G solvation = -16062.047882 eV Core-core repulsion = 13479.270627 eV Total energy + Delta-G solvation = -2582.777256 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.93328 -36.33974 -34.11778 -32.63174 -30.78739 -29.64210 -27.63040 -25.33282 -25.01751 -23.49474 -21.36169 -19.78202 -18.82665 -17.87041 -16.47575 -15.27653 -15.15149 -14.86027 -14.48594 -13.85617 -13.56130 -13.29843 -13.23390 -13.14592 -12.62526 -12.52227 -12.29031 -12.10149 -11.76744 -11.22908 -11.10248 -10.98672 -10.74795 -10.71600 -10.23945 -10.11113 -9.96819 -9.52228 -9.17786 -8.83977 -8.53289 -8.46044 -7.30660 -6.01495 -4.08208 0.71609 1.36043 1.78089 2.79164 3.32449 3.36638 3.39446 4.09392 4.41484 4.79420 4.92171 4.94917 5.20314 5.29269 5.29800 5.35686 5.45169 5.47040 5.62606 5.67675 5.78836 5.83710 5.96884 6.23790 6.38133 6.44875 6.88811 7.14697 7.23210 7.49714 7.78370 7.82085 7.90072 8.27483 8.37043 8.65725 9.01690 9.57631 11.04912 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.042398 B = 0.003801 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.247772 B = 7363.812354 C = 7565.838925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.062 3.938 3 N -0.473 5.473 4 C 0.070 3.930 5 C -0.044 4.044 6 C 0.070 3.930 7 N -0.688 5.688 8 C 0.211 3.789 9 H 0.001 0.999 10 C -0.124 4.124 11 C -0.519 4.519 12 H 0.060 0.940 13 C 0.062 3.938 14 N -0.890 5.890 15 Si 0.898 3.102 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.276 1.276 19 S 0.115 5.885 20 C -0.242 4.242 21 C -0.070 4.070 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.026 0.974 28 H 0.065 0.935 29 H 0.332 0.668 30 H 0.081 0.919 31 H 0.003 0.997 32 H 0.032 0.968 33 H 0.262 0.738 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.701 -14.341 -10.254 20.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.070 4.070 3 N -0.187 5.187 4 C -0.208 4.208 5 C -0.085 4.085 6 C -0.062 4.062 7 N -0.319 5.319 8 C 0.104 3.896 9 H 0.019 0.981 10 C -0.183 4.183 11 C -0.558 4.558 12 H 0.078 0.922 13 C -0.140 4.140 14 N -0.529 5.529 15 Si 0.726 3.274 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 S 0.371 5.629 20 C -0.363 4.363 21 C -0.129 4.129 22 H 0.091 0.909 23 H 0.091 0.909 24 H 0.094 0.906 25 H 0.110 0.890 26 H 0.110 0.890 27 H 0.044 0.956 28 H 0.083 0.917 29 H 0.149 0.851 30 H 0.099 0.901 31 H 0.022 0.978 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.357 -14.734 -10.103 19.723 hybrid contribution -1.347 1.427 0.395 2.001 sum -9.704 -13.307 -9.708 19.118 Atomic orbital electron populations 1.20342 0.87446 1.03190 1.02627 1.20175 0.98056 0.86381 1.02399 1.66164 1.04630 1.31357 1.16593 1.27041 0.93970 0.98111 1.01701 1.20373 0.94952 0.93170 1.00042 1.21827 0.94899 0.96743 0.92717 1.60737 1.42630 1.10094 1.18445 1.19108 0.93749 0.94084 0.82650 0.98104 1.21716 0.98782 0.94875 1.02901 1.21224 1.45232 0.95521 0.93822 0.92178 1.24922 0.95445 0.98172 0.95470 1.69888 1.48234 1.36346 0.98432 0.86568 0.79165 0.84749 0.76954 1.20304 1.21312 1.20169 1.83980 1.06529 1.03541 1.68845 1.25639 0.95412 1.00810 1.14455 1.20190 1.00990 0.89225 1.02543 0.90862 0.90886 0.90640 0.88970 0.89037 0.95619 0.91680 0.85093 0.90081 0.97750 0.94894 0.92860 0.90863 0.91289 0.90425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.06 36.01 0.36 -0.39 16 2 C 0.06 0.82 6.74 -84.22 -0.57 0.25 16 3 N -0.47 -7.50 10.53 -8.06 -0.08 -7.58 16 4 C 0.07 1.06 6.64 -13.45 -0.09 0.97 16 5 C -0.04 -0.67 6.06 -27.88 -0.17 -0.84 16 6 C 0.07 1.30 5.47 -3.82 -0.02 1.28 16 7 N -0.69 -14.79 6.30 -107.95 -0.68 -15.47 16 8 C 0.21 5.46 2.60 -68.87 -0.18 5.28 16 9 H 0.00 0.04 7.80 -51.93 -0.40 -0.37 16 10 C -0.12 -3.14 9.19 37.15 0.34 -2.80 16 11 C -0.52 -14.40 8.59 -34.44 -0.30 -14.69 16 12 H 0.06 1.63 7.62 -52.49 -0.40 1.23 16 13 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 14 N -0.89 -25.72 11.32 55.43 0.63 -25.10 16 15 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 S 0.11 1.46 23.18 -107.50 -2.49 -1.04 16 20 C -0.24 -2.87 6.59 -35.92 -0.24 -3.11 16 21 C -0.07 -0.56 10.10 36.01 0.36 -0.20 16 22 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.07 0.55 6.71 -51.92 -0.35 0.20 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 26 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 27 H 0.03 0.52 8.06 -51.93 -0.42 0.10 16 28 H 0.06 1.24 7.44 -51.94 -0.39 0.85 16 29 H 0.33 6.90 8.22 -39.29 -0.32 6.58 16 30 H 0.08 2.22 6.07 -51.93 -0.32 1.91 16 31 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 32 H 0.03 0.81 8.14 -51.92 -0.42 0.39 16 33 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.52 6.75 -51.93 -0.35 0.16 16 LS Contribution 310.96 15.07 4.69 4.69 Total: -1.00 -30.28 310.96 -8.98 -39.26 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -5.43 Total: 1.47 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -0.59 Total: -12.62 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: -0.14 Total: -48.15 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -2.49 Total: -1.04 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.28 -8.98 -39.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308854702.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.748 kcal (2) G-P(sol) polarization free energy of solvation -30.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds