Wall clock time and date at job start Mon Mar 30 2020 07:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31784 * 122.74936 * 2 1 4 4 C 1.29025 * 117.12258 * 179.72958 * 3 2 1 5 5 C 1.50705 * 124.91168 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.46697 * 90.00078 * 5 4 3 7 7 N 1.46902 * 109.46912 * 180.02562 * 6 5 4 8 8 C 1.46901 * 111.00096 * 180.02562 * 7 6 5 9 9 H 1.08999 * 109.46870 * 324.99148 * 8 7 6 10 10 C 1.52993 * 109.47413 * 84.99589 * 8 7 6 11 11 C 1.50702 * 109.47001 * 204.99784 * 8 7 6 12 12 H 1.07999 * 119.99757 * 359.97438 * 11 8 7 13 13 C 1.37874 * 119.99815 * 179.97438 * 11 8 7 14 14 N 1.31515 * 120.00390 * 0.02562 * 13 11 8 15 15 Si 1.86799 * 119.99886 * 179.97438 * 13 11 8 16 16 H 1.48497 * 109.47431 * 60.00194 * 15 13 11 17 17 H 1.48504 * 109.47091 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47342 * 300.00103 * 15 13 11 19 19 S 1.70968 * 110.17021 * 359.97438 * 4 3 2 20 20 C 1.33641 * 122.75115 * 179.70289 * 2 1 3 21 21 C 1.50700 * 126.03597 * 0.25055 * 20 2 1 22 22 H 1.08994 * 109.47218 * 90.03005 * 1 2 3 23 23 H 1.09007 * 109.46702 * 210.02827 * 1 2 3 24 24 H 1.08999 * 109.46968 * 330.02330 * 1 2 3 25 25 H 1.08994 * 109.47279 * 209.99791 * 5 4 3 26 26 H 1.09001 * 109.47408 * 330.00386 * 5 4 3 27 27 H 1.09005 * 109.47501 * 299.99332 * 6 5 4 28 28 H 1.08989 * 109.47322 * 60.00086 * 6 5 4 29 29 H 1.00897 * 111.00070 * 56.04450 * 7 6 5 30 30 H 1.08994 * 109.47254 * 179.97438 * 10 8 7 31 31 H 1.08997 * 109.47414 * 300.00230 * 10 8 7 32 32 H 1.09010 * 109.47009 * 60.00049 * 10 8 7 33 33 H 0.96993 * 120.00140 * 179.97438 * 14 13 11 34 34 H 1.09004 * 109.47176 * 90.00027 * 21 20 2 35 35 H 1.09000 * 109.46916 * 209.99905 * 21 20 2 36 36 H 1.08999 * 109.47044 * 329.99869 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 0.0054 5 6 4.4835 2.1272 0.0058 6 6 4.8092 2.5190 1.4485 7 7 5.7636 3.6358 1.4490 8 6 6.1008 4.0396 2.8206 9 1 5.2244 3.9258 3.4586 10 6 7.2338 3.1571 3.3480 11 6 6.5422 5.4805 2.8258 12 1 6.5699 6.0401 1.9026 13 6 6.9107 6.0842 4.0093 14 7 6.8775 5.4026 5.1335 15 14 7.4586 7.8701 4.0158 16 1 6.3596 8.7269 3.5030 17 1 7.7994 8.2783 5.4023 18 1 8.6531 8.0246 3.1470 19 16 3.9332 -0.6730 0.0121 20 6 2.2300 -1.1239 0.0058 21 6 1.6847 -2.5288 0.0078 22 1 -0.3633 -0.0005 -1.0276 23 1 -0.3633 -0.8898 0.5143 24 1 -0.3633 0.8902 0.5135 25 1 5.3979 1.8233 -0.5034 26 1 4.0453 2.9803 -0.5122 27 1 3.8947 2.8230 1.9579 28 1 5.2474 1.6661 1.9666 29 1 5.4065 4.4168 0.9192 30 1 7.4843 3.4570 4.3655 31 1 6.9146 2.1150 3.3442 32 1 8.1102 3.2710 2.7099 33 1 7.1371 5.8272 5.9660 34 1 1.5570 -2.8705 -1.0194 35 1 2.3811 -3.1881 0.5260 36 1 0.7217 -2.5441 0.5181 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308854702.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:17 Heat of formation + Delta-G solvation = 4.944905 kcal Electronic energy + Delta-G solvation = -16062.895300 eV Core-core repulsion = 13479.270627 eV Total energy + Delta-G solvation = -2583.624673 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.95123 -38.08173 -35.54530 -34.21088 -32.27366 -30.56620 -29.27285 -27.34513 -26.02840 -24.84236 -22.66916 -21.76879 -19.83826 -18.88785 -18.49983 -16.95562 -16.42591 -16.13052 -16.01354 -15.30510 -15.04885 -14.58191 -14.15402 -14.05828 -13.86807 -13.70402 -13.58295 -13.33181 -12.96950 -12.86321 -12.77094 -12.63840 -12.35569 -12.21839 -12.04001 -11.97461 -11.84258 -10.92916 -10.60006 -10.57918 -10.17719 -9.51368 -9.15575 -8.13996 -6.28903 -0.30103 0.37769 0.77442 1.43063 1.45271 1.52852 1.76336 2.41447 3.04235 3.14883 3.62328 4.00852 4.07056 4.10166 4.16219 4.31075 4.55519 4.58978 4.67676 4.75947 4.79167 4.84063 4.95047 4.99581 5.04657 5.05822 5.08770 5.19548 5.43468 5.44879 5.65047 5.83636 6.20078 6.40868 6.71467 6.80267 6.96350 7.41547 8.91814 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.042398 B = 0.003801 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.247772 B = 7363.812354 C = 7565.838925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.031 3.969 3 N -0.500 5.500 4 C 0.038 3.962 5 C -0.031 4.031 6 C 0.078 3.922 7 N -0.681 5.681 8 C 0.214 3.786 9 H -0.035 1.035 10 C -0.113 4.113 11 C -0.541 4.541 12 H 0.063 0.937 13 C 0.012 3.988 14 N -0.919 5.919 15 Si 0.966 3.034 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.269 1.269 19 S 0.135 5.865 20 C -0.229 4.229 21 C -0.073 4.073 22 H 0.086 0.914 23 H 0.098 0.902 24 H 0.063 0.937 25 H 0.106 0.894 26 H 0.092 0.908 27 H 0.005 0.995 28 H 0.060 0.940 29 H 0.336 0.664 30 H 0.057 0.943 31 H 0.021 0.979 32 H 0.032 0.968 33 H 0.263 0.737 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.116 -15.323 -11.321 21.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.100 4.100 3 N -0.215 5.215 4 C -0.240 4.240 5 C -0.072 4.072 6 C -0.053 4.053 7 N -0.312 5.312 8 C 0.105 3.895 9 H -0.017 1.017 10 C -0.171 4.171 11 C -0.579 4.579 12 H 0.081 0.919 13 C -0.187 4.187 14 N -0.558 5.558 15 Si 0.791 3.209 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.194 1.194 19 S 0.391 5.609 20 C -0.350 4.350 21 C -0.132 4.132 22 H 0.104 0.896 23 H 0.116 0.884 24 H 0.082 0.918 25 H 0.124 0.876 26 H 0.110 0.890 27 H 0.023 0.977 28 H 0.079 0.921 29 H 0.154 0.846 30 H 0.076 0.924 31 H 0.040 0.960 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.779 -15.721 -11.191 21.200 hybrid contribution -1.282 1.608 0.719 2.178 sum -10.061 -14.113 -10.472 20.250 Atomic orbital electron populations 1.20436 0.85323 1.03859 1.03670 1.20701 0.99595 0.86189 1.03508 1.66157 1.05288 1.33298 1.16776 1.26880 0.93948 0.99231 1.03960 1.20147 0.95878 0.93793 0.97336 1.21754 0.93098 0.95285 0.95185 1.60651 1.43780 1.10802 1.15919 1.18939 0.92455 0.93915 0.84163 1.01745 1.21538 0.98540 0.95720 1.01333 1.21571 1.45531 0.96600 0.94181 0.91895 1.25773 0.95370 1.02529 0.95051 1.70024 1.48755 1.38086 0.98953 0.85498 0.78918 0.79436 0.77088 1.19592 1.20939 1.19394 1.83823 1.07407 1.01599 1.68112 1.26205 0.94640 1.02347 1.11845 1.20400 1.01881 0.86760 1.04115 0.89588 0.88390 0.91787 0.87571 0.89005 0.97682 0.92132 0.84644 0.92429 0.96048 0.94882 0.92789 0.89009 0.90348 0.88583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.32 10.06 71.24 0.72 -0.60 16 2 C 0.03 0.79 6.74 41.52 0.28 1.07 16 3 N -0.50 -15.76 10.53 -179.40 -1.89 -17.65 16 4 C 0.04 1.12 6.64 88.52 0.59 1.71 16 5 C -0.03 -0.92 6.06 29.85 0.18 -0.74 16 6 C 0.08 2.96 5.47 86.30 0.47 3.43 16 7 N -0.68 -29.54 6.30 -495.45 -3.12 -32.66 16 8 C 0.21 11.27 2.60 44.17 0.11 11.38 16 9 H -0.03 -2.07 7.80 -2.39 -0.02 -2.08 16 10 C -0.11 -5.78 9.19 71.98 0.66 -5.11 16 11 C -0.54 -30.23 8.59 25.60 0.22 -30.01 16 12 H 0.06 3.40 7.62 -2.91 -0.02 3.38 16 13 C 0.01 0.67 5.30 84.65 0.45 1.12 16 14 N -0.92 -53.87 11.32 21.45 0.24 -53.62 16 15 Si 0.97 43.85 29.54 68.60 2.03 45.87 16 16 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 17 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 19 S 0.13 3.24 23.18 -56.49 -1.31 1.93 16 20 C -0.23 -4.95 6.59 24.64 0.16 -4.79 16 21 C -0.07 -0.91 10.10 71.24 0.72 -0.19 16 22 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.10 1.20 6.71 -2.38 -0.02 1.19 16 24 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 26 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 27 H 0.00 0.21 8.06 -2.38 -0.02 0.19 16 28 H 0.06 2.33 7.44 -2.39 -0.02 2.31 16 29 H 0.34 14.08 8.22 -89.70 -0.74 13.34 16 30 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16 31 H 0.02 0.97 7.45 -2.39 -0.02 0.95 16 32 H 0.03 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 34 H 0.09 0.88 8.14 -2.38 -0.02 0.87 16 35 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.10 0.90 6.75 -2.39 -0.02 0.88 16 Total: -1.00 -65.38 310.96 0.85 -64.53 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.33 Total: 14.34 kcal Atomic # 6 Polarization: -27.31 SS G_CDS: 4.56 Total: -22.74 kcal Atomic # 7 Polarization: -99.16 SS G_CDS: -4.77 Total: -103.93 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -1.31 Total: 1.93 kcal Total: -65.38 0.85 -64.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308854702.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.479 kcal (2) G-P(sol) polarization free energy of solvation -65.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds