Wall clock time and date at job start Mon Mar 30 2020 06:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47039 * 2 1 4 4 C 1.53000 * 109.47054 * 239.99738 * 2 1 3 5 5 C 1.50699 * 109.46873 * 175.00179 * 4 2 1 6 6 N 1.31879 * 119.62696 * 90.00404 * 5 4 2 7 7 C 1.31855 * 121.73725 * 179.97438 * 6 5 4 8 8 C 1.38234 * 120.79317 * 0.02562 * 7 6 5 9 9 C 1.38601 * 119.17636 * 0.23721 * 8 7 6 10 10 C 1.38306 * 119.62781 * 269.97755 * 5 4 2 11 11 Cl 1.73595 * 120.43052 * 0.04546 * 10 5 4 12 12 N 1.46907 * 109.47099 * 119.99840 * 2 1 3 13 13 C 1.46900 * 110.99841 * 275.00162 * 12 2 1 14 14 C 1.50701 * 109.46754 * 179.97438 * 13 12 2 15 15 H 1.07997 * 120.00363 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99827 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00317 * 180.02562 * 16 14 13 18 18 Si 1.86807 * 120.00035 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47175 * 89.99502 * 18 16 14 20 20 H 1.48505 * 109.46968 * 209.99720 * 18 16 14 21 21 H 1.48501 * 109.46867 * 329.99106 * 18 16 14 22 22 H 1.09005 * 109.46863 * 60.00047 * 1 2 3 23 23 H 1.08999 * 109.47526 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46918 * 300.00172 * 1 2 3 25 25 H 1.09000 * 109.46788 * 55.00269 * 4 2 1 26 26 H 1.09000 * 109.47192 * 295.00254 * 4 2 1 27 27 H 1.07993 * 119.60114 * 180.02562 * 7 6 5 28 28 H 1.08002 * 120.40833 * 179.97438 * 8 7 6 29 29 H 1.07994 * 120.79849 * 179.74680 * 9 8 7 30 30 H 1.00903 * 110.99869 * 38.95182 * 12 2 1 31 31 H 1.08999 * 109.47136 * 299.99868 * 13 12 2 32 32 H 1.08999 * 109.47173 * 60.00053 * 13 12 2 33 33 H 0.96999 * 120.00054 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 7 4.2858 -1.5414 -0.7402 7 6 5.6030 -1.4898 -0.7707 8 6 6.2560 -0.4524 -1.4096 9 6 5.5086 0.5435 -2.0184 10 6 4.1246 0.4527 -1.9709 11 17 3.1375 1.6678 -2.7211 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5873 -0.5218 3.5561 15 1 2.8370 -1.5697 3.4797 16 6 2.7314 0.1353 4.7596 17 7 3.1725 -0.5142 5.8147 18 14 2.3002 1.9481 4.8915 19 1 0.8709 2.0908 5.2682 20 1 3.1514 2.5852 5.9283 21 1 2.5357 2.6094 3.5829 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.6054 -0.2618 -2.1369 26 1 1.7516 -1.7716 -1.2055 27 1 6.1785 -2.2675 -0.2908 28 1 7.3352 -0.4162 -1.4304 29 1 5.9917 1.3681 -2.5213 30 1 1.4495 -1.4979 1.4101 31 1 2.7588 1.0462 2.1182 32 1 1.0870 0.6163 2.5525 33 1 3.2735 -0.0519 6.6615 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308892714.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:17 Heat of formation + Delta-G solvation = 21.563863 kcal Electronic energy + Delta-G solvation = -16512.468869 eV Core-core repulsion = 13791.688047 eV Total energy + Delta-G solvation = -2720.780822 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.12227 -36.80399 -36.52337 -33.19837 -32.29182 -31.65235 -30.00881 -26.83171 -26.31829 -23.40312 -22.42634 -21.18452 -20.29233 -17.01230 -16.64233 -16.54198 -15.75333 -14.79904 -14.38667 -14.29632 -13.88114 -13.56688 -13.18056 -12.87246 -12.56043 -12.26904 -11.97852 -11.90828 -11.84741 -11.62108 -11.32582 -10.89792 -10.68473 -10.56728 -10.27585 -9.75996 -9.59095 -9.23496 -9.20435 -8.64408 -8.56142 -7.32633 -6.01937 -3.98633 1.09858 1.33139 2.11648 3.29609 3.37105 3.40649 3.86433 4.44992 4.48128 4.70886 4.85553 5.07200 5.09659 5.30748 5.32975 5.44345 5.48243 5.71659 5.73133 5.84656 6.00603 6.04392 6.11385 6.21528 6.36625 6.49825 6.69416 6.85280 7.09170 7.67618 7.97635 8.20020 8.45188 8.71684 9.08202 9.60855 11.11542 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.020383 B = 0.006704 C = 0.006114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.337358 B = 4175.451815 C = 4578.907749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.087 3.913 3 H 0.070 0.930 4 C -0.066 4.066 5 C 0.175 3.825 6 N -0.435 5.435 7 C 0.111 3.889 8 C -0.176 4.176 9 C -0.070 4.070 10 C -0.097 4.097 11 Cl -0.066 7.066 12 N -0.664 5.664 13 C 0.167 3.833 14 C -0.509 4.509 15 H 0.080 0.920 16 C 0.068 3.932 17 N -0.902 5.902 18 Si 0.875 3.125 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.268 1.268 22 H 0.053 0.947 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.160 0.840 28 H 0.138 0.862 29 H 0.138 0.862 30 H 0.337 0.663 31 H 0.020 0.980 32 H -0.022 1.022 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.603 2.291 -18.291 18.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.025 4.025 3 H 0.089 0.911 4 C -0.105 4.105 5 C 0.036 3.964 6 N -0.143 5.143 7 C -0.046 4.046 8 C -0.196 4.196 9 C -0.096 4.096 10 C -0.126 4.126 11 Cl -0.037 7.037 12 N -0.294 5.294 13 C 0.039 3.961 14 C -0.548 4.548 15 H 0.098 0.902 16 C -0.134 4.134 17 N -0.541 5.541 18 Si 0.702 3.298 19 H -0.204 1.204 20 H -0.212 1.212 21 H -0.193 1.193 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.098 0.902 26 H 0.104 0.896 27 H 0.177 0.823 28 H 0.156 0.844 29 H 0.156 0.844 30 H 0.154 0.846 31 H 0.038 0.962 32 H -0.005 1.005 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.830 1.809 -17.887 18.071 hybrid contribution -0.633 2.050 0.082 2.147 sum 1.197 3.858 -17.805 18.257 Atomic orbital electron populations 1.22494 0.97533 1.01969 1.01786 1.21442 0.91997 0.97760 0.91296 0.91141 1.20732 0.88184 1.02995 0.98581 1.21064 0.97212 0.88297 0.89851 1.67748 1.06361 1.26328 1.13845 1.22939 0.90620 0.96857 0.94226 1.22089 1.01353 0.95642 1.00561 1.21403 0.91617 0.98842 0.97784 1.21920 0.92548 0.94295 1.03865 1.98343 1.70230 1.54432 1.80700 1.60543 1.55732 1.09606 1.03538 1.19985 0.94052 0.92825 0.89236 1.21075 1.43141 0.98829 0.91738 0.90237 1.24897 0.94974 0.97769 0.95717 1.69901 1.46956 1.36416 1.00828 0.86866 0.78530 0.86315 0.78049 1.20370 1.21219 1.19269 0.92829 0.92415 0.92333 0.90213 0.89622 0.82306 0.84401 0.84426 0.84556 0.96182 1.00454 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.60 9.16 37.16 0.34 -2.26 16 2 C 0.09 1.47 2.58 -67.71 -0.17 1.30 16 3 H 0.07 1.28 7.80 -51.93 -0.40 0.88 16 4 C -0.07 -0.98 4.79 -27.88 -0.13 -1.11 16 5 C 0.17 2.78 5.77 -82.55 -0.48 2.31 16 6 N -0.43 -7.39 10.27 -9.45 -0.10 -7.49 16 7 C 0.11 1.58 11.18 -17.54 -0.20 1.38 16 8 C -0.18 -2.11 10.11 -39.45 -0.40 -2.50 16 9 C -0.07 -0.87 9.98 -39.24 -0.39 -1.26 16 10 C -0.10 -1.39 6.34 -39.35 -0.25 -1.64 16 11 Cl -0.07 -0.83 27.33 -51.86 -1.42 -2.25 16 12 N -0.66 -13.93 5.95 -107.99 -0.64 -14.57 16 13 C 0.17 4.15 4.31 -4.98 -0.02 4.13 16 14 C -0.51 -14.87 9.87 -34.44 -0.34 -15.21 16 15 H 0.08 2.53 8.06 -52.49 -0.42 2.10 16 16 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 17 N -0.90 -28.17 13.96 55.43 0.77 -27.40 16 18 Si 0.87 22.14 27.47 -169.99 -4.67 17.47 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.27 -6.61 6.54 56.52 0.37 -6.24 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 24 H 0.06 0.93 7.45 -51.93 -0.39 0.54 16 25 H 0.08 1.01 6.90 -51.93 -0.36 0.65 16 26 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.16 1.87 8.06 -52.49 -0.42 1.44 16 28 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 29 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.34 6.92 8.46 -39.29 -0.33 6.59 16 31 H 0.02 0.53 7.11 -51.93 -0.37 0.16 16 32 H -0.02 -0.54 6.86 -51.93 -0.36 -0.90 16 33 H 0.26 7.67 8.31 -40.82 -0.34 7.34 16 LS Contribution 294.83 15.07 4.44 4.44 Total: -1.00 -32.24 294.83 -8.08 -40.32 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -4.33 Total: 2.44 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -2.14 Total: -12.96 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: 0.03 Total: -49.46 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.42 Total: -2.25 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.24 -8.08 -40.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308892714.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.885 kcal (2) G-P(sol) polarization free energy of solvation -32.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds