Wall clock time and date at job start Mon Mar 30 2020 07:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33632 * 126.04084 * 2 1 4 4 N 1.31782 * 114.50230 * 179.97438 * 3 2 1 5 5 C 1.29027 * 117.12018 * 359.97438 * 4 3 2 6 6 C 1.50704 * 124.91086 * 179.97438 * 5 4 3 7 7 H 1.08993 * 109.46790 * 180.02562 * 6 5 4 8 8 C 1.52990 * 109.47485 * 60.02565 * 6 5 4 9 9 C 1.53003 * 109.47050 * 300.02569 * 6 5 4 10 10 N 1.46895 * 109.47339 * 185.00323 * 9 6 5 11 11 C 1.46902 * 111.00561 * 179.97438 * 10 9 6 12 12 H 1.09002 * 109.46719 * 34.99912 * 11 10 9 13 13 C 1.52997 * 109.47094 * 275.00137 * 11 10 9 14 14 C 1.50697 * 109.47181 * 154.99698 * 11 10 9 15 15 H 1.07999 * 120.00055 * 0.02562 * 14 11 10 16 16 C 1.37878 * 119.99687 * 180.02562 * 14 11 10 17 17 N 1.31511 * 120.00458 * 359.97438 * 16 14 11 18 18 Si 1.86805 * 119.99926 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.46980 * 89.99582 * 18 16 14 20 20 H 1.48493 * 109.47135 * 209.99651 * 18 16 14 21 21 H 1.48498 * 109.47274 * 330.00048 * 18 16 14 22 22 S 1.70970 * 110.17084 * 0.23453 * 5 4 3 23 23 H 1.09003 * 109.46637 * 90.02727 * 1 2 3 24 24 H 1.08992 * 109.47288 * 210.02886 * 1 2 3 25 25 H 1.08993 * 109.47051 * 330.03351 * 1 2 3 26 26 H 1.08005 * 122.74859 * 0.02562 * 3 2 1 27 27 H 1.09004 * 109.47470 * 59.99424 * 8 6 5 28 28 H 1.08996 * 109.47450 * 180.02562 * 8 6 5 29 29 H 1.09003 * 109.47236 * 300.00045 * 8 6 5 30 30 H 1.09004 * 109.47337 * 65.00299 * 9 6 5 31 31 H 1.09001 * 109.47413 * 305.00236 * 9 6 5 32 32 H 1.00906 * 111.00234 * 56.04356 * 10 9 6 33 33 H 1.09002 * 109.47153 * 299.99508 * 13 11 10 34 34 H 1.09001 * 109.46832 * 179.97438 * 13 11 10 35 35 H 1.09004 * 109.47261 * 59.99681 * 13 11 10 36 36 H 0.96999 * 120.00480 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2933 1.0805 0.0000 4 7 3.5845 0.8169 0.0005 5 6 3.9311 -0.4259 0.0015 6 6 5.3532 -0.9247 0.0017 7 1 5.3558 -2.0147 0.0021 8 6 6.0732 -0.4125 1.2506 9 6 6.0731 -0.4134 -1.2478 10 7 7.4203 -0.9959 -1.3096 11 6 8.1427 -0.5268 -2.4995 12 1 7.8646 0.5060 -2.7097 13 6 7.7787 -1.4067 -3.6970 14 6 9.6268 -0.6066 -2.2501 15 1 9.9963 -0.9698 -1.3026 16 6 10.5127 -0.2158 -3.2316 17 7 10.0627 0.2262 -4.3856 18 14 12.3524 -0.3153 -2.9228 19 1 12.8542 -1.6469 -3.3475 20 1 13.0429 0.7449 -3.7001 21 1 12.6224 -0.1233 -1.4753 22 16 2.5436 -1.4249 -0.0047 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3633 -0.8896 0.5142 25 1 -0.3633 0.8902 0.5133 26 1 1.9025 2.0874 0.0004 27 1 5.5603 -0.7767 2.1408 28 1 7.1018 -0.7729 1.2505 29 1 6.0705 0.6775 1.2502 30 1 6.1487 0.6731 -1.2046 31 1 5.5109 -0.7035 -2.1354 32 1 7.3799 -2.0038 -1.2854 33 1 8.0568 -2.4395 -3.4868 34 1 8.3144 -1.0583 -4.5800 35 1 6.7052 -1.3490 -3.8774 36 1 10.6860 0.5014 -5.0760 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309019182.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:04 Heat of formation + Delta-G solvation = 28.177870 kcal Electronic energy + Delta-G solvation = -16325.397514 eV Core-core repulsion = 13742.780298 eV Total energy + Delta-G solvation = -2582.617216 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.78297 -36.73318 -34.35741 -32.45168 -31.45195 -28.15513 -26.92128 -25.22338 -24.85678 -23.85901 -21.44266 -20.19280 -18.53833 -18.06865 -16.23768 -15.43317 -14.91987 -14.70480 -14.38221 -14.20008 -13.92335 -13.21533 -13.10312 -13.00775 -12.70230 -12.45097 -11.81694 -11.60075 -11.39616 -11.27107 -11.11903 -10.89987 -10.68110 -10.62177 -10.38918 -10.10944 -9.87726 -9.43370 -9.23592 -8.98244 -8.69572 -8.32632 -7.20964 -5.94537 -3.97757 0.70851 1.31479 1.73908 2.87611 3.35350 3.41694 3.46439 4.20401 4.47690 4.79432 4.93926 4.98558 5.23862 5.25343 5.33934 5.37169 5.54634 5.63586 5.68123 5.76160 6.13775 6.17585 6.23759 6.33931 6.57569 6.70680 6.73590 6.87327 7.13206 7.40296 7.76790 7.81882 7.91723 8.30752 8.56475 8.64512 9.09357 9.67393 11.12602 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.045698 B = 0.004053 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.570995 B = 6905.985636 C = 7061.615468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.238 4.238 3 C 0.037 3.963 4 N -0.468 5.468 5 C 0.074 3.926 6 C -0.013 4.013 7 H 0.083 0.917 8 C -0.126 4.126 9 C 0.077 3.923 10 N -0.680 5.680 11 C 0.212 3.788 12 H 0.034 0.966 13 C -0.169 4.169 14 C -0.493 4.493 15 H 0.063 0.937 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.897 3.103 19 H -0.283 1.283 20 H -0.288 1.288 21 H -0.274 1.274 22 S 0.100 5.900 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.172 0.828 27 H 0.041 0.959 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.016 0.984 32 H 0.323 0.677 33 H 0.028 0.972 34 H 0.089 0.911 35 H 0.004 0.996 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.523 -2.717 8.713 19.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.359 4.359 3 C -0.114 4.114 4 N -0.181 5.181 5 C -0.205 4.205 6 C -0.036 4.036 7 H 0.101 0.899 8 C -0.185 4.185 9 C -0.055 4.055 10 N -0.309 5.309 11 C 0.104 3.896 12 H 0.052 0.948 13 C -0.228 4.228 14 C -0.532 4.532 15 H 0.081 0.919 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.209 1.209 20 H -0.214 1.214 21 H -0.198 1.198 22 S 0.356 5.644 23 H 0.092 0.908 24 H 0.087 0.913 25 H 0.096 0.904 26 H 0.189 0.811 27 H 0.060 0.940 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.035 0.965 32 H 0.139 0.861 33 H 0.047 0.953 34 H 0.107 0.893 35 H 0.023 0.977 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.933 -2.826 8.952 19.361 hybrid contribution 0.083 0.366 -0.797 0.880 sum -16.850 -2.461 8.155 18.881 Atomic orbital electron populations 1.20175 0.87038 1.03098 1.02735 1.25902 1.01383 0.95176 1.13442 1.21728 0.87108 0.99922 1.02597 1.66218 1.17230 1.18720 1.15894 1.27251 1.00679 0.90981 1.01569 1.19958 0.85062 0.99497 0.99036 0.89864 1.21655 1.01067 1.01997 0.93748 1.21846 0.90390 1.00586 0.92671 1.60814 1.13142 1.11634 1.45333 1.19166 0.93045 0.94313 0.83057 0.94830 1.22432 0.96357 0.99243 1.04778 1.21156 0.90047 1.41953 1.00062 0.91873 1.24957 0.98957 0.95532 0.95157 1.69885 1.34257 1.44539 1.05121 0.86509 0.85240 0.77462 0.78239 1.20897 1.21429 1.19850 1.83936 0.99400 1.12009 1.69065 0.90771 0.91338 0.90436 0.81132 0.93991 0.89844 0.91942 0.90591 0.96541 0.86073 0.95326 0.89271 0.97734 0.93112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.42 36.01 0.38 -0.15 16 2 C -0.24 -2.65 6.60 -35.92 -0.24 -2.89 16 3 C 0.04 0.48 11.25 -19.19 -0.22 0.26 16 4 N -0.47 -7.27 10.53 -11.86 -0.12 -7.40 16 5 C 0.07 1.09 5.91 -13.45 -0.08 1.01 16 6 C -0.01 -0.19 2.96 -91.77 -0.27 -0.47 16 7 H 0.08 1.13 8.12 -51.93 -0.42 0.71 16 8 C -0.13 -1.86 9.06 37.15 0.34 -1.52 16 9 C 0.08 1.43 4.85 -3.83 -0.02 1.41 16 10 N -0.68 -14.27 5.69 -107.95 -0.61 -14.88 16 11 C 0.21 5.38 2.57 -68.87 -0.18 5.20 16 12 H 0.03 0.95 7.80 -51.93 -0.41 0.55 16 13 C -0.17 -4.11 8.94 37.16 0.33 -3.78 16 14 C -0.49 -13.71 8.84 -34.44 -0.30 -14.02 16 15 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 16 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16 17 N -0.90 -26.02 11.32 55.43 0.63 -25.39 16 18 Si 0.90 21.65 29.54 -169.99 -5.02 16.62 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 22 S 0.10 1.19 23.17 -107.50 -2.49 -1.30 16 23 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.17 1.73 8.06 -52.48 -0.42 1.31 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 1.30 7.75 -51.93 -0.40 0.90 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.08 1.56 8.06 -51.93 -0.42 1.14 16 31 H 0.02 0.32 7.43 -51.93 -0.39 -0.07 16 32 H 0.32 6.32 8.47 -39.29 -0.33 5.99 16 33 H 0.03 0.66 8.13 -51.93 -0.42 0.23 16 34 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 35 H 0.00 0.08 7.45 -51.93 -0.39 -0.30 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 312.43 15.07 4.71 4.71 Total: -1.00 -29.77 312.43 -8.84 -38.61 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.57 Total: 2.55 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -0.36 Total: -13.53 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: -0.11 Total: -47.67 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.49 Total: -1.30 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.77 -8.84 -38.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309019182.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.790 kcal (2) G-P(sol) polarization free energy of solvation -29.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds