Wall clock time and date at job start Mon Mar 30 2020 07:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.46906 * 2 1 4 4 N 1.29021 * 124.92038 * 89.99713 * 3 2 1 5 5 C 1.31778 * 117.12996 * 179.97438 * 4 3 2 6 6 C 1.50699 * 122.75210 * 179.97438 * 5 4 3 7 7 N 1.46893 * 109.47125 * 275.02090 * 6 5 4 8 8 C 1.46904 * 111.00244 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.47164 * 35.00209 * 8 7 6 10 10 C 1.53004 * 109.47219 * 275.00615 * 8 7 6 11 11 C 1.53002 * 109.47145 * 155.00252 * 8 7 6 12 12 C 1.50696 * 109.46919 * 295.00022 * 11 8 7 13 13 H 1.07999 * 120.00202 * 359.97438 * 12 11 8 14 14 C 1.37884 * 119.99746 * 180.02562 * 12 11 8 15 15 N 1.31514 * 119.99573 * 0.27650 * 14 12 11 16 16 Si 1.86800 * 119.99781 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47035 * 60.00183 * 16 14 12 18 18 H 1.48503 * 109.46845 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47237 * 299.99939 * 16 14 12 20 20 C 1.33636 * 114.49968 * 0.22855 * 5 4 3 21 21 S 1.70985 * 124.91391 * 269.99372 * 3 2 1 22 22 H 1.09005 * 109.46899 * 60.00294 * 1 2 3 23 23 H 1.09007 * 109.47057 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47317 * 300.00416 * 1 2 3 25 25 H 1.08997 * 109.47317 * 239.99584 * 2 1 3 26 26 H 1.09005 * 109.46899 * 119.99706 * 2 1 3 27 27 H 1.09010 * 109.47070 * 155.02198 * 6 5 4 28 28 H 1.08997 * 109.47616 * 35.02780 * 6 5 4 29 29 H 1.00898 * 111.00298 * 56.04995 * 7 6 5 30 30 H 1.09001 * 109.47356 * 59.99403 * 10 8 7 31 31 H 1.09000 * 109.47210 * 180.02562 * 10 8 7 32 32 H 1.09002 * 109.46722 * 299.99865 * 10 8 7 33 33 H 1.09000 * 109.46497 * 175.00287 * 11 8 7 34 34 H 1.08999 * 109.46623 * 55.00351 * 11 8 7 35 35 H 0.97001 * 120.00651 * 359.71956 * 15 14 12 36 36 H 1.08004 * 126.04143 * 179.76877 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2784 2.1172 1.0579 5 6 2.7141 3.3479 0.8793 6 6 3.0400 4.2717 2.0245 7 7 1.8146 4.9452 2.4743 8 6 2.0944 5.8555 3.5929 9 1 3.0780 6.3054 3.4579 10 6 2.0679 5.0721 4.9069 11 6 1.0317 6.9555 3.6334 12 6 1.1393 7.8038 2.3925 13 1 1.8908 7.5809 1.6495 14 6 0.2791 8.8651 2.2062 15 7 -0.6318 9.1403 3.1140 16 14 0.4130 9.9171 0.6684 17 1 0.2011 9.0685 -0.5318 18 1 -0.6186 10.9846 0.7076 19 1 1.7624 10.5339 0.6065 20 6 2.8381 3.7116 -0.4006 21 16 2.3586 2.3434 -1.4021 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.7644 5.0169 1.6954 28 1 3.4610 3.6950 2.8481 29 1 1.1038 4.2740 2.7240 30 1 2.8249 4.2884 4.8780 31 1 2.2751 5.7476 5.7369 32 1 1.0843 4.6222 5.0418 33 1 1.1872 7.5786 4.5141 34 1 0.0414 6.5024 3.6790 35 1 -0.7011 8.5943 3.9127 36 1 3.1741 4.6738 -0.7582 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309029504.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:42 Heat of formation + Delta-G solvation = 22.243842 kcal Electronic energy + Delta-G solvation = -16366.779199 eV Core-core repulsion = 13783.904664 eV Total energy + Delta-G solvation = -2582.874535 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.86128 -36.72920 -34.30950 -32.90593 -30.98587 -28.93087 -26.88001 -25.81234 -24.73822 -22.77429 -21.63561 -20.02996 -19.57188 -17.51827 -16.66197 -15.56089 -15.26930 -14.64974 -14.37969 -14.01833 -13.87656 -13.60098 -13.18904 -12.92070 -12.67836 -12.49112 -11.98963 -11.86004 -11.52763 -11.36305 -11.28878 -11.12581 -11.01098 -10.67319 -10.26646 -10.01390 -9.62226 -9.54311 -9.31750 -8.67374 -8.41957 -8.17481 -7.59689 -6.17574 -3.82145 0.80444 1.42571 1.79693 2.86479 3.51836 3.55328 3.73225 4.02220 4.67974 4.75371 4.90755 5.01863 5.06992 5.29449 5.40147 5.50231 5.59217 5.59816 5.66258 5.73405 5.80900 5.89885 5.94252 5.99899 6.03022 6.30301 6.38845 6.56203 6.90093 7.34783 7.45150 7.83805 7.87082 8.05757 8.44830 8.69101 9.08156 9.86281 11.22959 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.020838 B = 0.005299 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.365407 B = 5282.919148 C = 5913.214910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.044 4.044 3 C 0.046 3.954 4 N -0.467 5.467 5 C 0.076 3.924 6 C 0.134 3.866 7 N -0.657 5.657 8 C 0.097 3.903 9 H 0.066 0.934 10 C -0.181 4.181 11 C 0.020 3.980 12 C -0.568 4.568 13 H 0.051 0.949 14 C 0.007 3.993 15 N -0.924 5.924 16 Si 1.067 2.933 17 H -0.290 1.290 18 H -0.285 1.285 19 H -0.291 1.291 20 C -0.230 4.230 21 S 0.098 5.902 22 H 0.058 0.942 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.037 0.963 29 H 0.335 0.665 30 H 0.040 0.960 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.008 0.992 34 H 0.007 0.993 35 H 0.265 0.735 36 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.665 -17.696 -7.061 20.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.085 4.085 3 C -0.233 4.233 4 N -0.181 5.181 5 C -0.055 4.055 6 C 0.002 3.998 7 N -0.287 5.287 8 C -0.012 4.012 9 H 0.085 0.915 10 C -0.240 4.240 11 C -0.017 4.017 12 C -0.607 4.607 13 H 0.069 0.931 14 C -0.195 4.195 15 N -0.562 5.562 16 Si 0.897 3.103 17 H -0.217 1.217 18 H -0.211 1.211 19 H -0.217 1.217 20 C -0.370 4.370 21 S 0.352 5.648 22 H 0.077 0.923 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.101 0.899 26 H 0.109 0.891 27 H 0.102 0.898 28 H 0.055 0.945 29 H 0.152 0.848 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.026 0.974 34 H 0.025 0.975 35 H 0.076 0.924 36 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 5.918 -16.297 -8.884 19.482 hybrid contribution 0.990 -1.334 2.162 2.727 sum 6.908 -17.631 -6.722 20.094 Atomic orbital electron populations 1.21774 0.93509 1.02318 1.02997 1.20175 0.96758 0.87690 1.03863 1.26964 1.03671 1.01679 0.90988 1.66053 1.14298 1.06111 1.31676 1.20250 1.00028 0.90623 0.94624 1.20445 0.94104 0.93153 0.92069 1.60584 1.07511 1.21285 1.39326 1.21648 1.00915 0.93166 0.85516 0.91532 1.22574 1.00758 1.00266 1.00429 1.19230 0.93021 0.92178 0.97280 1.21919 1.19338 1.13876 1.05570 0.93096 1.25759 0.93498 0.97369 1.02866 1.70780 1.34093 1.41170 1.10136 0.83567 0.75744 0.75984 0.75034 1.21686 1.21097 1.21743 1.26845 1.10969 1.03597 0.95555 1.83806 1.61378 1.06278 1.13309 0.92312 0.91569 0.91786 0.89917 0.89051 0.89773 0.94487 0.84757 0.94060 0.92470 0.93059 0.97367 0.97484 0.92429 0.80380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.89 37.16 0.37 -0.93 16 2 C -0.04 -0.41 6.52 -27.88 -0.18 -0.59 16 3 C 0.05 0.59 6.64 -13.46 -0.09 0.50 16 4 N -0.47 -7.28 10.53 -8.06 -0.08 -7.37 16 5 C 0.08 1.22 6.25 -84.23 -0.53 0.69 16 6 C 0.13 2.26 5.92 -4.98 -0.03 2.23 16 7 N -0.66 -13.07 5.95 -107.99 -0.64 -13.71 16 8 C 0.10 2.02 2.53 -67.71 -0.17 1.85 16 9 H 0.07 1.40 7.80 -51.93 -0.41 0.99 16 10 C -0.18 -3.17 9.16 37.16 0.34 -2.83 16 11 C 0.02 0.53 3.96 -27.88 -0.11 0.41 16 12 C -0.57 -16.44 8.84 -34.44 -0.30 -16.75 16 13 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 14 C 0.01 0.20 5.46 -17.82 -0.10 0.11 16 15 N -0.92 -29.15 13.65 55.43 0.76 -28.39 16 16 Si 1.07 26.31 29.90 -169.99 -5.08 21.22 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 C -0.23 -3.37 11.12 29.12 0.32 -3.05 16 21 S 0.10 1.18 23.18 -107.50 -2.49 -1.31 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.08 1.37 8.01 -51.92 -0.42 0.95 16 28 H 0.04 0.60 7.43 -51.93 -0.39 0.21 16 29 H 0.33 6.62 8.46 -39.29 -0.33 6.29 16 30 H 0.04 0.64 7.45 -51.93 -0.39 0.26 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.05 0.89 8.13 -51.93 -0.42 0.47 16 33 H 0.01 0.22 8.00 -51.93 -0.42 -0.19 16 34 H 0.01 0.19 8.01 -51.93 -0.42 -0.22 16 35 H 0.27 8.35 7.22 -40.82 -0.29 8.05 16 36 H 0.18 2.42 8.06 -52.48 -0.42 2.00 16 LS Contribution 316.02 15.07 4.76 4.76 Total: -1.00 -32.45 316.02 -8.90 -41.35 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -5.64 Total: 1.79 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: -0.48 Total: -18.35 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: 0.03 Total: -49.47 kcal Atomic # 14 Polarization: 26.31 SS G_CDS: -5.08 Total: 21.22 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.49 Total: -1.31 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.45 -8.90 -41.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309029504.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.598 kcal (2) G-P(sol) polarization free energy of solvation -32.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds