Wall clock time and date at job start Mon Mar 30 2020 07:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.46906 * 2 1 4 4 N 1.29021 * 124.92038 * 89.99713 * 3 2 1 5 5 C 1.31778 * 117.12996 * 179.97438 * 4 3 2 6 6 C 1.50699 * 122.75210 * 179.97438 * 5 4 3 7 7 N 1.46893 * 109.47125 * 275.02090 * 6 5 4 8 8 C 1.46904 * 111.00244 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.47164 * 35.00209 * 8 7 6 10 10 C 1.53004 * 109.47219 * 275.00615 * 8 7 6 11 11 C 1.53002 * 109.47145 * 155.00252 * 8 7 6 12 12 C 1.50696 * 109.46919 * 295.00022 * 11 8 7 13 13 H 1.07999 * 120.00202 * 359.97438 * 12 11 8 14 14 C 1.37884 * 119.99746 * 180.02562 * 12 11 8 15 15 N 1.31514 * 119.99573 * 0.27650 * 14 12 11 16 16 Si 1.86800 * 119.99781 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47035 * 60.00183 * 16 14 12 18 18 H 1.48503 * 109.46845 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47237 * 299.99939 * 16 14 12 20 20 C 1.33636 * 114.49968 * 0.22855 * 5 4 3 21 21 S 1.70985 * 124.91391 * 269.99372 * 3 2 1 22 22 H 1.09005 * 109.46899 * 60.00294 * 1 2 3 23 23 H 1.09007 * 109.47057 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47317 * 300.00416 * 1 2 3 25 25 H 1.08997 * 109.47317 * 239.99584 * 2 1 3 26 26 H 1.09005 * 109.46899 * 119.99706 * 2 1 3 27 27 H 1.09010 * 109.47070 * 155.02198 * 6 5 4 28 28 H 1.08997 * 109.47616 * 35.02780 * 6 5 4 29 29 H 1.00898 * 111.00298 * 56.04995 * 7 6 5 30 30 H 1.09001 * 109.47356 * 59.99403 * 10 8 7 31 31 H 1.09000 * 109.47210 * 180.02562 * 10 8 7 32 32 H 1.09002 * 109.46722 * 299.99865 * 10 8 7 33 33 H 1.09000 * 109.46497 * 175.00287 * 11 8 7 34 34 H 1.08999 * 109.46623 * 55.00351 * 11 8 7 35 35 H 0.97001 * 120.00651 * 359.71956 * 15 14 12 36 36 H 1.08004 * 126.04143 * 179.76877 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2784 2.1172 1.0579 5 6 2.7141 3.3479 0.8793 6 6 3.0400 4.2717 2.0245 7 7 1.8146 4.9452 2.4743 8 6 2.0944 5.8555 3.5929 9 1 3.0780 6.3054 3.4579 10 6 2.0679 5.0721 4.9069 11 6 1.0317 6.9555 3.6334 12 6 1.1393 7.8038 2.3925 13 1 1.8908 7.5809 1.6495 14 6 0.2791 8.8651 2.2062 15 7 -0.6318 9.1403 3.1140 16 14 0.4130 9.9171 0.6684 17 1 0.2011 9.0685 -0.5318 18 1 -0.6186 10.9846 0.7076 19 1 1.7624 10.5339 0.6065 20 6 2.8381 3.7116 -0.4006 21 16 2.3586 2.3434 -1.4021 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.7644 5.0169 1.6954 28 1 3.4610 3.6950 2.8481 29 1 1.1038 4.2740 2.7240 30 1 2.8249 4.2884 4.8780 31 1 2.2751 5.7476 5.7369 32 1 1.0843 4.6222 5.0418 33 1 1.1872 7.5786 4.5141 34 1 0.0414 6.5024 3.6790 35 1 -0.7011 8.5943 3.9127 36 1 3.1741 4.6738 -0.7582 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309029504.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:41 Heat of formation + Delta-G solvation = 0.778809 kcal Electronic energy + Delta-G solvation = -16367.709993 eV Core-core repulsion = 13783.904664 eV Total energy + Delta-G solvation = -2583.805329 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.95962 -38.33544 -35.47541 -34.75739 -32.43295 -30.18541 -28.79794 -26.95666 -25.85633 -24.88134 -22.61636 -21.71258 -20.68840 -18.92851 -18.49501 -16.79574 -16.59032 -15.79126 -15.64758 -15.50087 -15.36423 -15.08706 -14.77759 -14.28319 -13.93247 -13.68683 -13.33540 -13.05606 -13.01727 -12.88763 -12.54362 -12.52555 -12.47009 -12.06210 -11.99540 -11.93218 -11.44863 -10.62603 -10.60442 -10.46301 -10.35338 -9.73036 -9.13762 -8.55795 -6.20956 -0.23910 0.43037 0.74770 1.52929 1.62516 1.72931 1.80976 2.62748 3.05633 3.25574 3.48406 3.89160 4.03201 4.14199 4.21516 4.29672 4.32505 4.37373 4.44416 4.54957 4.71060 4.75022 4.84221 4.97091 5.03887 5.06214 5.11068 5.18588 5.22217 5.33025 5.43872 6.11641 6.25413 6.34552 6.48354 6.73954 6.79568 7.56513 8.85166 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.020838 B = 0.005299 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.365407 B = 5282.919148 C = 5913.214910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.045 4.045 3 C 0.041 3.959 4 N -0.497 5.497 5 C 0.056 3.944 6 C 0.141 3.859 7 N -0.673 5.673 8 C 0.106 3.894 9 H 0.065 0.935 10 C -0.170 4.170 11 C 0.022 3.978 12 C -0.575 4.575 13 H 0.049 0.951 14 C -0.049 4.049 15 N -0.950 5.950 16 Si 1.115 2.885 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.269 1.269 20 C -0.253 4.253 21 S 0.154 5.846 22 H 0.057 0.943 23 H 0.091 0.909 24 H 0.040 0.960 25 H 0.112 0.888 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.044 0.956 29 H 0.333 0.667 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.049 0.951 33 H -0.009 1.009 34 H -0.018 1.018 35 H 0.251 0.749 36 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.547 -19.166 -8.786 22.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.085 4.085 3 C -0.238 4.238 4 N -0.213 5.213 5 C -0.075 4.075 6 C 0.009 3.991 7 N -0.303 5.303 8 C -0.004 4.004 9 H 0.084 0.916 10 C -0.229 4.229 11 C -0.015 4.015 12 C -0.613 4.613 13 H 0.068 0.932 14 C -0.244 4.244 15 N -0.589 5.589 16 Si 0.938 3.062 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.194 1.194 20 C -0.393 4.393 21 S 0.409 5.591 22 H 0.076 0.924 23 H 0.110 0.890 24 H 0.059 0.941 25 H 0.130 0.870 26 H 0.114 0.886 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.150 0.850 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.009 0.991 34 H 0.001 0.999 35 H 0.061 0.939 36 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 6.823 -17.796 -10.610 21.814 hybrid contribution 0.708 -0.966 2.656 2.914 sum 7.531 -18.762 -7.954 21.726 Atomic orbital electron populations 1.21766 0.93173 1.03633 1.01776 1.20392 0.96885 0.85753 1.05519 1.27658 1.02224 1.02906 0.90976 1.66063 1.15797 1.06252 1.33155 1.20170 1.01437 0.91118 0.94760 1.20371 0.92611 0.93312 0.92782 1.60441 1.09135 1.21791 1.38958 1.21365 0.98575 0.92569 0.87895 0.91647 1.22420 1.01523 1.00461 0.98466 1.19159 0.93535 0.93316 0.95517 1.22269 1.18790 1.14015 1.06265 0.93228 1.27291 0.92921 0.99041 1.05147 1.70919 1.35717 1.41744 1.10568 0.82953 0.76719 0.74676 0.71890 1.20064 1.21286 1.19396 1.27063 1.11118 1.05003 0.96078 1.83554 1.59912 1.04103 1.11549 0.92402 0.89034 0.94090 0.87006 0.88628 0.89652 0.93748 0.84992 0.91655 0.92038 0.93223 0.99127 0.99938 0.93924 0.80004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.89 71.98 0.71 -1.54 16 2 C -0.04 -0.71 6.52 29.85 0.19 -0.52 16 3 C 0.04 0.97 6.64 88.52 0.59 1.56 16 4 N -0.50 -15.05 10.53 -179.41 -1.89 -16.94 16 5 C 0.06 1.78 6.25 41.52 0.26 2.04 16 6 C 0.14 4.66 5.92 85.56 0.51 5.16 16 7 N -0.67 -26.80 5.95 -495.56 -2.95 -29.75 16 8 C 0.11 4.41 2.53 44.92 0.11 4.53 16 9 H 0.07 2.73 7.80 -2.39 -0.02 2.71 16 10 C -0.17 -5.81 9.16 71.98 0.66 -5.16 16 11 C 0.02 1.18 3.96 29.85 0.12 1.30 16 12 C -0.58 -33.66 8.84 25.60 0.23 -33.43 16 13 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 14 C -0.05 -2.92 5.46 84.66 0.46 -2.46 16 15 N -0.95 -61.17 13.65 21.45 0.29 -60.88 16 16 Si 1.12 52.61 29.90 68.60 2.05 54.66 16 17 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 20 C -0.25 -7.13 11.12 66.78 0.74 -6.39 16 21 S 0.15 3.36 23.18 -56.49 -1.31 2.05 16 22 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 23 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 24 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 27 H 0.09 2.74 8.01 -2.38 -0.02 2.72 16 28 H 0.04 1.39 7.43 -2.39 -0.02 1.37 16 29 H 0.33 13.29 8.46 -89.70 -0.76 12.53 16 30 H 0.06 1.93 7.45 -2.39 -0.02 1.91 16 31 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.05 1.70 8.13 -2.39 -0.02 1.68 16 33 H -0.01 -0.53 8.00 -2.39 -0.02 -0.55 16 34 H -0.02 -1.02 8.01 -2.39 -0.02 -1.04 16 35 H 0.25 16.41 7.22 -92.71 -0.67 15.74 16 36 H 0.18 4.80 8.06 -2.91 -0.02 4.78 16 Total: -1.00 -70.33 316.02 1.18 -69.15 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 0.40 Total: 16.61 kcal Atomic # 6 Polarization: -39.49 SS G_CDS: 4.58 Total: -34.91 kcal Atomic # 7 Polarization: -103.02 SS G_CDS: -4.55 Total: -107.57 kcal Atomic # 14 Polarization: 52.61 SS G_CDS: 2.05 Total: 54.66 kcal Atomic # 16 Polarization: 3.36 SS G_CDS: -1.31 Total: 2.05 kcal Total: -70.33 1.18 -69.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309029504.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.930 kcal (2) G-P(sol) polarization free energy of solvation -70.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds