Wall clock time and date at job start Mon Mar 30 2020 07:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.47624 * 2 1 4 4 C 1.33636 * 126.03829 * 89.99710 * 3 2 1 5 5 N 1.31781 * 114.50111 * 180.02562 * 4 3 2 6 6 C 1.29028 * 117.12141 * 0.02562 * 5 4 3 7 7 C 1.50703 * 124.91398 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47208 * 90.02141 * 7 6 5 9 9 N 1.46900 * 109.47445 * 179.97438 * 8 7 6 10 10 C 1.46898 * 111.00343 * 180.02562 * 9 8 7 11 11 H 1.09004 * 109.46699 * 34.99931 * 10 9 8 12 12 C 1.52998 * 109.47094 * 275.00432 * 10 9 8 13 13 C 1.50697 * 109.46994 * 154.99976 * 10 9 8 14 14 H 1.07995 * 120.00050 * 35.00405 * 13 10 9 15 15 C 1.37879 * 119.99715 * 214.99626 * 13 10 9 16 16 N 1.31519 * 119.99989 * 184.91638 * 15 13 10 17 17 Si 1.86800 * 120.00146 * 4.91694 * 15 13 10 18 18 H 1.48506 * 109.47006 * 84.83177 * 17 15 13 19 19 H 1.48502 * 109.47249 * 204.82859 * 17 15 13 20 20 H 1.48504 * 109.47150 * 324.83193 * 17 15 13 21 21 S 1.70975 * 110.17181 * 0.22497 * 6 5 4 22 22 H 1.09000 * 109.47145 * 59.99806 * 1 2 3 23 23 H 1.08993 * 109.47143 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46700 * 300.00177 * 1 2 3 25 25 H 1.09003 * 109.46700 * 239.99823 * 2 1 3 26 26 H 1.09000 * 109.47145 * 120.00194 * 2 1 3 27 27 H 1.08002 * 122.75153 * 0.03022 * 4 3 2 28 28 H 1.09006 * 109.46933 * 330.02460 * 7 6 5 29 29 H 1.09001 * 109.47417 * 210.02385 * 7 6 5 30 30 H 1.09001 * 109.47131 * 300.00420 * 8 7 6 31 31 H 1.09006 * 109.46913 * 60.00307 * 8 7 6 32 32 H 1.00900 * 110.99648 * 56.04888 * 9 8 7 33 33 H 1.09002 * 109.46931 * 175.04359 * 12 10 9 34 34 H 1.09003 * 109.46941 * 295.04022 * 12 10 9 35 35 H 1.08995 * 109.47411 * 55.04053 * 12 10 9 36 36 H 0.97001 * 120.00059 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.2946 2.1620 1.0806 5 7 2.7246 3.3795 0.8170 6 6 2.8393 3.7066 -0.4258 7 6 3.3122 5.0477 -0.9246 8 6 4.8325 5.0215 -1.0947 9 7 5.2935 6.3285 -1.5816 10 6 6.7519 6.3403 -1.7576 11 1 7.0848 5.3595 -2.0972 12 6 7.4239 6.6734 -0.4241 13 6 7.1257 7.3802 -2.7822 14 1 6.5642 8.3004 -2.8474 15 6 8.1848 7.1569 -3.6363 16 7 8.5724 8.1023 -4.4644 17 14 9.0693 5.5117 -3.6172 18 1 8.3451 4.5503 -4.4871 19 1 10.4549 5.6887 -4.1213 20 1 9.1110 4.9882 -2.2282 21 16 2.3705 2.4007 -1.4249 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 2.1647 1.7935 2.0875 28 1 3.0405 5.8197 -0.2045 29 1 2.8430 5.2646 -1.8842 30 1 5.3018 4.8045 -0.1351 31 1 5.1043 4.2495 -1.8148 32 1 4.9976 7.0693 -0.9637 33 1 8.5057 6.5960 -0.5331 34 1 7.1603 7.6888 -0.1280 35 1 7.0845 5.9729 0.3388 36 1 9.3177 7.9454 -5.0651 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309065797.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:40 Heat of formation + Delta-G solvation = 26.160234 kcal Electronic energy + Delta-G solvation = -16007.645822 eV Core-core repulsion = 13424.941114 eV Total energy + Delta-G solvation = -2582.704708 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.79069 -36.60913 -34.75169 -33.02889 -31.58553 -29.12153 -27.37853 -25.24395 -24.64284 -22.96960 -21.92009 -20.10717 -19.18177 -18.07501 -16.94806 -15.57280 -15.17723 -14.67862 -14.57571 -14.39029 -14.25129 -13.71100 -13.15588 -12.98763 -12.78290 -12.39612 -12.09657 -11.95914 -11.87089 -11.66245 -11.51125 -11.06391 -11.02707 -10.76709 -10.67945 -10.10199 -9.74802 -9.59149 -9.28048 -9.16113 -8.78019 -8.50303 -7.40928 -6.04156 -4.01246 0.64695 1.28401 1.72391 2.78475 3.29632 3.37493 3.37900 4.11562 4.43403 4.54617 4.70499 4.88413 4.94502 5.19418 5.25652 5.32300 5.37910 5.40002 5.51001 5.67798 5.73762 5.80837 5.84938 6.05875 6.19438 6.27929 6.31776 6.41491 6.62216 6.82240 7.14990 7.70733 7.72536 7.94152 8.35541 8.67498 9.03836 9.58699 11.09492 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.036252 B = 0.004147 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.184863 B = 6749.696104 C = 7008.947546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.044 4.044 3 C -0.233 4.233 4 C 0.036 3.964 5 N -0.477 5.477 6 C 0.064 3.936 7 C -0.045 4.045 8 C 0.064 3.936 9 N -0.674 5.674 10 C 0.180 3.820 11 H 0.036 0.964 12 C -0.171 4.171 13 C -0.491 4.491 14 H 0.077 0.923 15 C 0.070 3.930 16 N -0.901 5.901 17 Si 0.874 3.126 18 H -0.275 1.275 19 H -0.289 1.289 20 H -0.269 1.269 21 S 0.122 5.878 22 H 0.056 0.944 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.170 0.830 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.025 0.975 31 H 0.065 0.935 32 H 0.330 0.670 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.020 0.980 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.598 -15.653 9.009 23.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.084 4.084 3 C -0.355 4.355 4 C -0.115 4.115 5 N -0.190 5.190 6 C -0.214 4.214 7 C -0.086 4.086 8 C -0.067 4.067 9 N -0.304 5.304 10 C 0.072 3.928 11 H 0.054 0.946 12 C -0.231 4.231 13 C -0.530 4.530 14 H 0.095 0.905 15 C -0.132 4.132 16 N -0.539 5.539 17 Si 0.702 3.298 18 H -0.201 1.201 19 H -0.215 1.215 20 H -0.194 1.194 21 S 0.378 5.622 22 H 0.076 0.924 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.093 0.907 26 H 0.101 0.899 27 H 0.187 0.813 28 H 0.110 0.890 29 H 0.113 0.887 30 H 0.044 0.956 31 H 0.084 0.916 32 H 0.147 0.853 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.039 0.961 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.503 -15.492 7.509 22.510 hybrid contribution 0.827 -1.167 1.801 2.300 sum -13.676 -16.659 9.310 23.478 Atomic orbital electron populations 1.21802 0.94302 1.01979 1.02496 1.19957 0.96055 0.89015 1.03338 1.25984 1.11462 1.02600 0.95408 1.21658 1.01142 0.88825 0.99875 1.66307 1.16414 1.17491 1.18829 1.27133 1.01728 1.01519 0.91039 1.20356 0.97357 0.88832 1.02039 1.21909 0.91604 0.94905 0.98321 1.60934 1.15583 1.01976 1.51875 1.19656 0.82684 0.97358 0.93094 0.94619 1.22642 1.01523 0.99870 0.99050 1.20864 1.13776 1.03187 1.15170 0.90487 1.24973 0.96719 0.96377 0.95088 1.69892 1.27842 1.32754 1.23433 0.86923 0.79074 0.85229 0.78576 1.20115 1.21490 1.19367 1.84088 1.60228 1.06651 1.11246 0.92444 0.91964 0.92324 0.90665 0.89913 0.81268 0.88983 0.88670 0.95637 0.91607 0.85333 0.93217 0.93141 0.96072 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.90 37.16 0.37 -0.62 16 2 C -0.04 -0.33 6.47 -27.88 -0.18 -0.51 16 3 C -0.23 -2.51 5.85 -35.92 -0.21 -2.72 16 4 C 0.04 0.43 11.25 -19.19 -0.22 0.22 16 5 N -0.48 -6.97 10.54 -11.86 -0.13 -7.09 16 6 C 0.06 0.90 6.64 -13.45 -0.09 0.81 16 7 C -0.04 -0.64 6.06 -27.88 -0.17 -0.81 16 8 C 0.06 1.11 5.46 -3.82 -0.02 1.09 16 9 N -0.67 -13.69 6.23 -107.95 -0.67 -14.37 16 10 C 0.18 4.25 2.23 -68.87 -0.15 4.10 16 11 H 0.04 0.87 4.95 -51.93 -0.26 0.62 16 12 C -0.17 -3.67 9.16 37.16 0.34 -3.33 16 13 C -0.49 -13.82 9.19 -34.44 -0.32 -14.13 16 14 H 0.08 2.36 8.06 -52.49 -0.42 1.93 16 15 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 16 N -0.90 -27.61 13.96 55.43 0.77 -26.83 16 17 Si 0.87 21.69 26.99 -169.99 -4.59 17.10 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.27 -6.39 6.82 56.52 0.39 -6.01 16 21 S 0.12 1.47 23.18 -107.50 -2.49 -1.03 16 22 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 28 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.03 0.45 7.36 -51.93 -0.38 0.07 16 31 H 0.07 1.18 8.05 -51.93 -0.42 0.76 16 32 H 0.33 6.21 8.48 -39.29 -0.33 5.87 16 33 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.02 0.40 7.36 -51.93 -0.38 0.01 16 36 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 313.53 15.07 4.72 4.72 Total: -1.00 -31.07 313.53 -8.70 -39.77 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -5.57 Total: 1.70 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -0.75 Total: -13.98 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: -0.02 Total: -48.29 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.59 Total: 17.10 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.49 Total: -1.03 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.07 -8.70 -39.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309065797.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.932 kcal (2) G-P(sol) polarization free energy of solvation -31.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds