Wall clock time and date at job start Mon Mar 30 2020 07:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50704 * 109.47050 * 2 1 4 4 C 1.33633 * 126.03935 * 90.00054 * 3 2 1 5 5 N 1.31787 * 114.50410 * 179.97438 * 4 3 2 6 6 C 1.29025 * 117.11798 * 0.02562 * 5 4 3 7 7 C 1.50702 * 124.90881 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47352 * 90.02183 * 7 6 5 9 9 N 1.46897 * 109.47146 * 179.97438 * 8 7 6 10 10 C 1.46906 * 111.00172 * 180.02562 * 9 8 7 11 11 H 1.08998 * 109.46389 * 324.99645 * 10 9 8 12 12 C 1.52997 * 109.47302 * 84.99810 * 10 9 8 13 13 C 1.50697 * 109.47180 * 205.00376 * 10 9 8 14 14 H 1.07998 * 120.00039 * 359.97438 * 13 10 9 15 15 C 1.37880 * 119.99815 * 179.97438 * 13 10 9 16 16 N 1.31508 * 119.99915 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99777 * 179.97438 * 15 13 10 18 18 H 1.48497 * 109.47155 * 89.99872 * 17 15 13 19 19 H 1.48499 * 109.47102 * 210.00327 * 17 15 13 20 20 H 1.48499 * 109.46909 * 330.00049 * 17 15 13 21 21 S 1.70972 * 110.17024 * 0.22334 * 6 5 4 22 22 H 1.08997 * 109.47161 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.47249 * 299.99674 * 1 2 3 24 24 H 1.08997 * 109.47466 * 59.99919 * 1 2 3 25 25 H 1.09004 * 109.46771 * 240.00294 * 2 1 3 26 26 H 1.08997 * 109.47466 * 120.00081 * 2 1 3 27 27 H 1.08006 * 122.74630 * 0.02562 * 4 3 2 28 28 H 1.08995 * 109.47641 * 330.01752 * 7 6 5 29 29 H 1.09010 * 109.46904 * 210.02294 * 7 6 5 30 30 H 1.09005 * 109.46917 * 59.99750 * 8 7 6 31 31 H 1.09001 * 109.47361 * 299.99686 * 8 7 6 32 32 H 1.00896 * 111.00123 * 56.04903 * 9 8 7 33 33 H 1.09002 * 109.47153 * 180.02562 * 12 10 9 34 34 H 1.09001 * 109.46832 * 60.00356 * 12 10 9 35 35 H 1.09004 * 109.47261 * 300.00337 * 12 10 9 36 36 H 0.97001 * 119.99839 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2943 2.1621 1.0806 5 7 2.7252 3.3793 0.8170 6 6 2.8407 3.7061 -0.4258 7 6 3.3147 5.0469 -0.9245 8 6 4.8351 5.0197 -1.0939 9 7 5.2970 6.3265 -1.5807 10 6 6.7555 6.3374 -1.7561 11 1 7.2189 5.7244 -0.9831 12 6 7.1077 5.7732 -3.1339 13 6 7.2639 7.7518 -1.6475 14 1 6.5727 8.5617 -1.4666 15 6 8.6115 8.0120 -1.7789 16 7 9.4532 7.0257 -1.9986 17 14 9.2417 9.7654 -1.6450 18 1 9.5752 10.0648 -0.2292 19 1 10.4576 9.9199 -2.4833 20 1 8.1931 10.7056 -2.1159 21 16 2.3716 2.4003 -1.4248 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.8932 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 2.1645 1.7935 2.0874 28 1 3.0431 5.8191 -0.2049 29 1 2.8460 5.2639 -1.8845 30 1 5.1066 4.2475 -1.8138 31 1 5.3038 4.8027 -0.1341 32 1 5.0012 7.0675 -0.9631 33 1 8.1899 5.7809 -3.2639 34 1 6.6442 6.3863 -3.9069 35 1 6.7399 4.7501 -3.2125 36 1 10.4014 7.2087 -2.0907 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309065798.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:43 Heat of formation + Delta-G solvation = 4.921037 kcal Electronic energy + Delta-G solvation = -15927.245869 eV Core-core repulsion = 13343.620161 eV Total energy + Delta-G solvation = -2583.625708 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.74702 -38.05436 -35.71266 -34.76136 -32.84830 -30.16462 -28.48738 -27.32239 -25.72287 -23.82226 -23.13527 -21.76569 -20.19867 -19.02232 -18.50973 -16.96019 -16.42458 -16.23861 -15.91237 -15.28766 -15.24768 -14.92292 -14.79237 -14.14554 -13.93735 -13.68141 -13.37603 -12.92626 -12.85815 -12.65933 -12.59901 -12.49252 -12.32534 -12.21718 -12.00019 -11.85310 -11.73228 -10.91716 -10.58558 -10.58022 -10.20919 -9.70419 -9.14804 -8.14138 -6.28771 -0.29344 0.37076 0.78495 1.42829 1.43662 1.54766 1.83327 2.41473 3.10680 3.15590 3.67448 3.86138 4.08128 4.13060 4.17862 4.31861 4.39997 4.57392 4.59133 4.76923 4.80006 4.93092 4.99222 5.03467 5.06529 5.13981 5.19611 5.25971 5.35849 5.45560 5.65586 5.84253 6.20565 6.41509 6.72289 6.78566 6.97016 7.41732 8.91911 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.056082 B = 0.003535 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.151703 B = 7919.006892 C = 8045.318329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.045 4.045 3 C -0.217 4.217 4 C 0.013 3.987 5 N -0.502 5.502 6 C 0.034 3.966 7 C -0.032 4.032 8 C 0.077 3.923 9 N -0.682 5.682 10 C 0.214 3.786 11 H -0.035 1.035 12 C -0.114 4.114 13 C -0.539 4.539 14 H 0.063 0.937 15 C 0.011 3.989 16 N -0.919 5.919 17 Si 0.965 3.035 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.266 1.266 21 S 0.141 5.859 22 H 0.081 0.919 23 H 0.055 0.945 24 H 0.050 0.950 25 H 0.084 0.916 26 H 0.100 0.900 27 H 0.191 0.809 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.061 0.939 31 H 0.006 0.994 32 H 0.336 0.664 33 H 0.057 0.943 34 H 0.032 0.968 35 H 0.021 0.979 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.247 -13.351 2.663 21.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.085 4.085 3 C -0.338 4.338 4 C -0.137 4.137 5 N -0.217 5.217 6 C -0.243 4.243 7 C -0.073 4.073 8 C -0.054 4.054 9 N -0.313 5.313 10 C 0.106 3.894 11 H -0.017 1.017 12 C -0.172 4.172 13 C -0.578 4.578 14 H 0.081 0.919 15 C -0.188 4.188 16 N -0.559 5.559 17 Si 0.791 3.209 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.190 1.190 21 S 0.396 5.604 22 H 0.100 0.900 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.102 0.898 26 H 0.119 0.881 27 H 0.208 0.792 28 H 0.110 0.890 29 H 0.124 0.876 30 H 0.079 0.921 31 H 0.024 0.976 32 H 0.154 0.846 33 H 0.076 0.924 34 H 0.051 0.949 35 H 0.040 0.960 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.103 -13.268 1.289 21.684 hybrid contribution 1.024 0.613 1.960 2.295 sum -16.078 -12.655 3.249 20.718 Atomic orbital electron populations 1.21788 0.93313 1.03137 1.02060 1.20151 0.96764 0.86943 1.04659 1.26452 1.09343 1.03627 0.94363 1.22016 1.01933 0.88356 1.01358 1.66281 1.16669 1.19120 1.19585 1.26957 1.03634 1.02108 0.91604 1.20149 0.94748 0.89744 1.02627 1.21765 0.93594 0.93153 0.96887 1.60655 1.14264 1.03740 1.52593 1.18930 0.82796 0.94957 0.92713 1.01737 1.21546 1.01401 0.96375 0.97885 1.21604 0.93056 0.93517 1.49585 0.91910 1.25775 0.97057 1.01419 0.94523 1.70031 1.03183 1.32994 1.49645 0.85444 0.77820 0.79698 0.77985 1.20227 1.20792 1.18989 1.83867 1.59496 1.05790 1.11252 0.90033 0.92545 0.93119 0.89767 0.88150 0.79236 0.88984 0.87603 0.92092 0.97600 0.84639 0.92443 0.94852 0.96004 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.89 71.98 0.71 -0.89 16 2 C -0.05 -0.59 6.47 29.85 0.19 -0.40 16 3 C -0.22 -4.43 5.85 24.64 0.14 -4.28 16 4 C 0.01 0.32 11.25 83.65 0.94 1.26 16 5 N -0.50 -15.24 10.54 -191.44 -2.02 -17.26 16 6 C 0.03 0.99 6.64 88.52 0.59 1.58 16 7 C -0.03 -0.94 6.06 29.85 0.18 -0.76 16 8 C 0.08 2.89 5.47 86.30 0.47 3.36 16 9 N -0.68 -29.41 6.30 -495.45 -3.12 -32.53 16 10 C 0.21 11.25 2.60 44.17 0.11 11.37 16 11 H -0.03 -2.05 7.80 -2.39 -0.02 -2.07 16 12 C -0.11 -5.79 9.19 71.98 0.66 -5.13 16 13 C -0.54 -30.09 8.59 25.60 0.22 -29.87 16 14 H 0.06 3.39 7.62 -2.91 -0.02 3.37 16 15 C 0.01 0.64 5.30 84.66 0.45 1.09 16 16 N -0.92 -53.80 11.32 21.45 0.24 -53.56 16 17 Si 0.97 43.81 29.54 68.60 2.03 45.84 16 18 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 21 S 0.14 3.25 23.18 -56.49 -1.31 1.94 16 22 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 23 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 24 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 26 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.19 3.51 8.06 -2.91 -0.02 3.49 16 28 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.11 2.80 8.14 -2.38 -0.02 2.78 16 30 H 0.06 2.31 7.43 -2.38 -0.02 2.29 16 31 H 0.01 0.24 8.06 -2.39 -0.02 0.22 16 32 H 0.34 13.99 8.22 -89.70 -0.74 13.25 16 33 H 0.06 3.20 6.07 -2.39 -0.01 3.18 16 34 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.02 0.98 7.45 -2.38 -0.02 0.96 16 36 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -64.02 313.68 0.82 -63.21 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.32 Total: 15.02 kcal Atomic # 6 Polarization: -27.33 SS G_CDS: 4.68 Total: -22.66 kcal Atomic # 7 Polarization: -98.45 SS G_CDS: -4.90 Total: -103.35 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: 3.25 SS G_CDS: -1.31 Total: 1.94 kcal Total: -64.02 0.82 -63.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309065798.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.126 kcal (2) G-P(sol) polarization free energy of solvation -64.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds