Wall clock time and date at job start Mon Mar 30 2020 07:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29117 * 125.35819 * 2 1 4 4 C 1.31787 * 117.27586 * 180.02562 * 3 2 1 5 5 C 1.34233 * 115.52754 * 0.02562 * 4 3 2 6 6 N 1.39679 * 125.97051 * 179.97438 * 5 4 3 7 7 C 1.46496 * 119.99847 * 180.02562 * 6 5 4 8 8 C 1.53006 * 109.46995 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.46626 * 299.99666 * 8 7 6 10 10 C 1.52997 * 109.47164 * 59.99963 * 8 7 6 11 11 C 1.52997 * 109.47127 * 180.02562 * 8 7 6 12 12 C 1.50696 * 109.47055 * 179.97438 * 11 8 7 13 13 H 1.08000 * 120.00290 * 0.02562 * 12 11 8 14 14 C 1.37887 * 120.00079 * 179.97438 * 12 11 8 15 15 N 1.31516 * 119.99685 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00129 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46879 * 60.00177 * 16 14 12 18 18 H 1.48494 * 109.47196 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47151 * 300.00589 * 16 14 12 20 20 S 1.76149 * 125.36108 * 180.26892 * 2 1 3 21 21 H 1.08997 * 109.47111 * 89.97480 * 1 2 3 22 22 H 1.09002 * 109.46535 * 209.97442 * 1 2 3 23 23 H 1.08994 * 109.47265 * 329.97347 * 1 2 3 24 24 H 1.07991 * 122.23665 * 180.02562 * 4 3 2 25 25 H 0.96998 * 119.99961 * 0.02562 * 6 5 4 26 26 H 1.09001 * 109.47464 * 60.00544 * 7 6 5 27 27 H 1.09001 * 109.47459 * 300.00260 * 7 6 5 28 28 H 1.09000 * 109.47160 * 60.00369 * 9 8 7 29 29 H 1.09002 * 109.46719 * 180.02562 * 9 8 7 30 30 H 1.08993 * 109.47839 * 299.99931 * 9 8 7 31 31 H 1.09001 * 109.47375 * 59.99966 * 10 8 7 32 32 H 1.09002 * 109.46777 * 180.02562 * 10 8 7 33 33 H 1.09000 * 109.47140 * 299.99948 * 10 8 7 34 34 H 1.09001 * 109.47289 * 299.99953 * 11 8 7 35 35 H 1.09004 * 109.47261 * 59.99697 * 11 8 7 36 36 H 0.96999 * 119.99910 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2542 1.0530 0.0000 4 6 3.5590 0.8677 -0.0005 5 6 3.9614 -0.4129 -0.0015 6 7 5.2858 -0.8567 -0.0028 7 6 5.5772 -2.2923 -0.0044 8 6 7.0924 -2.5052 -0.0048 9 6 7.6975 -1.8606 -1.2535 10 6 7.6980 -1.8633 1.2450 11 6 7.3968 -4.0046 -0.0071 12 6 8.8891 -4.2142 -0.0082 13 1 9.5540 -3.3631 -0.0069 14 6 9.4057 -5.4926 -0.0098 15 7 8.5960 -6.5290 -0.0108 16 14 11.2555 -5.7525 -0.0104 17 1 11.8433 -5.1296 1.2028 18 1 11.5510 -7.2078 -0.0128 19 1 11.8429 -5.1266 -1.2222 20 16 2.5264 -1.4365 -0.0067 21 1 -0.3633 0.0005 -1.0276 22 1 -0.3632 -0.8903 0.5135 23 1 -0.3633 0.8897 0.5142 24 1 4.2577 1.6911 -0.0002 25 1 6.0126 -0.2142 -0.0025 26 1 5.1455 -2.7498 -0.8946 27 1 5.1464 -2.7516 0.8854 28 1 7.4806 -0.7924 -1.2523 29 1 8.7768 -2.0126 -1.2541 30 1 7.2661 -2.3179 -2.1439 31 1 7.2668 -2.3225 2.1346 32 1 8.7774 -2.0145 1.2444 33 1 7.4811 -0.7950 1.2462 34 1 6.9656 -4.4643 0.8822 35 1 6.9653 -4.4616 -0.8978 36 1 8.9594 -7.4284 -0.0123 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309089806.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:46 Heat of formation + Delta-G solvation = 20.989878 kcal Electronic energy + Delta-G solvation = -16398.280522 eV Core-core repulsion = 13815.351611 eV Total energy + Delta-G solvation = -2582.928911 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.33535 -37.89690 -34.62550 -32.40749 -31.09121 -27.83244 -26.97213 -26.60295 -25.21186 -23.49784 -22.62792 -19.93341 -18.32495 -17.58504 -16.48865 -16.24196 -14.97949 -14.75518 -14.40671 -14.26904 -14.22593 -13.34880 -13.07287 -12.98028 -12.88653 -12.33599 -12.30796 -12.13173 -11.36687 -11.22536 -11.07673 -10.93059 -10.72822 -10.55998 -10.34494 -10.31802 -9.87887 -9.52062 -9.28221 -9.02553 -8.87709 -8.42532 -7.30782 -6.06922 -4.08551 1.10052 1.26104 1.84571 3.07753 3.27842 3.33405 3.34459 3.49616 4.39679 4.44736 5.19750 5.27167 5.28390 5.43544 5.44596 5.48728 5.52545 5.65401 5.81760 5.96818 6.03692 6.11576 6.25293 6.34012 6.53101 6.54012 6.88782 6.96907 6.97382 7.08508 7.52847 7.58245 7.64826 7.90771 8.00714 8.32400 8.95520 9.55036 11.04496 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.050181 B = 0.004144 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.846335 B = 6754.568943 C = 7110.745693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.010 3.990 3 N -0.424 5.424 4 C -0.107 4.107 5 C 0.118 3.882 6 N -0.696 5.696 7 C 0.125 3.875 8 C -0.069 4.069 9 C -0.127 4.127 10 C -0.127 4.127 11 C 0.037 3.963 12 C -0.514 4.514 13 H 0.059 0.941 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.890 3.110 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 S 0.052 5.948 21 H 0.076 0.924 22 H 0.074 0.926 23 H 0.082 0.918 24 H 0.163 0.837 25 H 0.408 0.592 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.029 0.971 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.030 0.970 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.253 10.812 0.025 15.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.271 4.271 3 N -0.137 5.137 4 C -0.261 4.261 5 C -0.109 4.109 6 N -0.328 5.328 7 C 0.002 3.998 8 C -0.070 4.070 9 C -0.185 4.185 10 C -0.185 4.185 11 C 0.000 4.000 12 C -0.552 4.552 13 H 0.077 0.923 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.718 3.282 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 S 0.296 5.704 21 H 0.095 0.905 22 H 0.093 0.907 23 H 0.101 0.899 24 H 0.180 0.820 25 H 0.247 0.753 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.048 0.952 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.049 0.951 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.598 9.874 0.019 15.232 hybrid contribution 2.070 0.558 -0.006 2.144 sum -9.528 10.432 0.013 14.128 Atomic orbital electron populations 1.20208 0.85564 1.03389 1.03051 1.27074 0.99860 0.88082 1.12063 1.65964 1.04139 1.31314 1.12268 1.20959 0.91304 0.94248 1.19560 1.23583 0.90655 0.95387 1.01305 1.44459 1.01059 1.08312 1.78986 1.21861 0.98555 0.78301 1.01083 1.20870 0.89855 1.00904 0.95355 1.21762 1.02443 0.97157 0.97111 1.21760 1.02430 0.97172 0.97101 1.19089 0.97052 0.86459 0.97442 1.21124 0.91572 0.91836 1.50687 0.92284 1.25006 0.97714 0.96269 0.95392 1.69945 1.34505 0.98304 1.50605 0.86694 0.85894 0.77056 0.78581 1.20281 1.21325 1.20285 1.85137 0.97579 1.12351 1.75361 0.90519 0.90725 0.89904 0.82018 0.75266 0.92066 0.92064 0.95151 0.91270 0.93325 0.93319 0.91277 0.95150 0.96346 0.96346 0.92908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.54 10.50 36.01 0.38 -0.17 16 2 C 0.01 0.13 7.64 -13.42 -0.10 0.03 16 3 N -0.42 -6.27 10.54 -10.48 -0.11 -6.38 16 4 C -0.11 -1.54 11.30 -18.98 -0.21 -1.75 16 5 C 0.12 1.71 7.32 -15.38 -0.11 1.60 16 6 N -0.70 -9.93 5.16 -59.47 -0.31 -10.24 16 7 C 0.13 2.04 4.59 -4.04 -0.02 2.02 16 8 C -0.07 -1.27 0.54 -154.51 -0.08 -1.35 16 9 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 10 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 11 C 0.04 0.88 4.04 -27.89 -0.11 0.76 16 12 C -0.51 -13.36 7.65 -34.44 -0.26 -13.63 16 13 H 0.06 1.48 5.68 -52.49 -0.30 1.18 16 14 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.89 -25.85 13.29 55.43 0.74 -25.11 16 16 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 S 0.05 0.70 22.74 -107.50 -2.44 -1.74 16 21 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.16 2.04 8.06 -52.49 -0.42 1.62 16 25 H 0.41 5.35 6.29 -40.82 -0.26 5.09 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 29 H 0.07 1.29 6.62 -51.93 -0.34 0.95 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.29 6.62 -51.93 -0.34 0.95 16 33 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 306.27 15.07 4.62 4.62 Total: -1.00 -28.79 306.27 -7.88 -36.67 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -5.32 Total: 1.14 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: -0.03 Total: -14.82 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: 0.32 Total: -41.73 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -2.44 Total: -1.74 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.79 -7.88 -36.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309089806.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.657 kcal (2) G-P(sol) polarization free energy of solvation -28.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds