Wall clock time and date at job start Mon Mar 30 2020 06:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30838 * 1 3 3 Si 1.86799 * 119.99606 * 2 1 4 4 H 1.48508 * 109.46951 * 239.99556 * 3 2 1 5 5 H 1.48495 * 109.47575 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47009 * 120.00123 * 3 2 1 7 7 C 1.39925 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99915 * 192.17979 * 7 2 1 9 9 C 1.41413 * 119.99684 * 12.18688 * 7 2 1 10 10 C 1.40790 * 120.21041 * 27.51884 * 9 7 2 11 11 C 1.37648 * 119.89910 * 179.97438 * 10 9 7 12 12 C 1.38519 * 120.32226 * 359.73932 * 11 10 9 13 13 C 1.39310 * 120.42552 * 0.51904 * 12 11 10 14 14 N 1.39722 * 119.95331 * 179.75674 * 13 12 11 15 15 C 1.39707 * 120.00168 * 328.12106 * 14 13 12 16 16 C 1.39006 * 120.04130 * 334.55554 * 15 14 13 17 17 C 1.38119 * 120.07779 * 180.27702 * 16 15 14 18 18 C 1.38187 * 120.14543 * 359.97438 * 17 16 15 19 19 C 1.38954 * 120.07935 * 0.02562 * 18 17 16 20 20 N 1.39668 * 120.03735 * 179.97438 * 19 18 17 21 21 C 1.38772 * 120.03831 * 154.82651 * 15 14 13 22 22 C 1.38336 * 120.09189 * 359.48512 * 13 12 11 23 23 H 0.96996 * 120.00002 * 0.02562 * 1 2 3 24 24 H 1.08006 * 120.05108 * 359.95579 * 10 9 7 25 25 H 1.07994 * 119.83920 * 180.02562 * 11 10 9 26 26 H 1.08007 * 119.78643 * 180.25256 * 12 11 10 27 27 H 0.97003 * 119.99845 * 148.11953 * 14 13 12 28 28 H 1.08002 * 119.95931 * 0.24739 * 16 15 14 29 29 H 1.08002 * 119.92881 * 179.97438 * 17 16 15 30 30 H 1.08009 * 119.95884 * 180.02562 * 18 17 16 31 31 H 0.96996 * 119.99948 * 180.02562 * 20 19 18 32 32 H 0.96998 * 120.00235 * 0.02911 * 20 19 18 33 33 H 1.08002 * 120.07630 * 359.70308 * 21 15 14 34 34 H 1.07993 * 120.16232 * 180.23033 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0698 -1.2221 0.1979 9 6 1.3249 -2.4227 -0.2575 10 6 0.1615 -2.4247 -1.0503 11 6 -0.4982 -3.6072 -1.2978 12 6 -0.0201 -4.7975 -0.7749 13 6 1.1268 -4.8104 0.0158 14 7 1.5976 -6.0159 0.5425 15 6 0.6976 -7.0306 0.8775 16 6 -0.6175 -6.7160 1.1997 17 6 -1.5063 -7.7181 1.5365 18 6 -1.0920 -9.0363 1.5539 19 6 0.2211 -9.3579 1.2329 20 7 0.6391 -10.6904 1.2513 21 6 1.1170 -8.3533 0.8944 22 6 1.8034 -3.6321 0.2757 23 1 -0.4850 0.8400 -0.0004 24 1 -0.2131 -1.4998 -1.4635 25 1 -1.3903 -3.6077 -1.9065 26 1 -0.5422 -5.7209 -0.9779 27 1 2.5493 -6.1482 0.6755 28 1 -0.9444 -5.6868 1.1871 29 1 -2.5274 -7.4709 1.7869 30 1 -1.7897 -9.8175 1.8174 31 1 1.5560 -10.9142 1.0275 32 1 0.0125 -11.3920 1.4878 33 1 2.1381 -8.6007 0.6441 34 1 2.6947 -3.6413 0.8854 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313414138.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:00 Heat of formation + Delta-G solvation = 43.479145 kcal Electronic energy + Delta-G solvation = -17310.042459 eV Core-core repulsion = 14592.644804 eV Total energy + Delta-G solvation = -2717.397655 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.41339 -37.67258 -35.44272 -33.70381 -32.98830 -29.96800 -29.83908 -28.05991 -27.00846 -25.23034 -22.31231 -21.82150 -20.66606 -20.11580 -17.59101 -17.13388 -16.52685 -15.69478 -15.41228 -15.12639 -14.51966 -14.35159 -13.71510 -13.31634 -13.15398 -12.88693 -12.70024 -12.21787 -11.68505 -11.47957 -11.24161 -11.12334 -10.99283 -10.80704 -10.60347 -10.32271 -9.94082 -9.57662 -9.34696 -9.13556 -8.03434 -7.44167 -7.31733 -6.72295 -6.35012 -4.37493 1.85209 2.04172 2.82029 3.07557 3.09362 3.10674 3.25581 3.84361 3.95510 4.21056 4.32818 4.69005 5.26670 5.49274 5.69611 5.80494 5.97411 5.99781 6.10825 6.30933 6.49974 6.58252 6.80065 6.91085 6.94873 7.05282 7.05605 7.17082 7.28598 7.36163 7.63008 7.77059 7.84118 7.86641 8.05740 8.15071 8.40653 8.43360 8.68172 8.91716 8.99336 10.24091 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.049031 B = 0.004262 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.933980 B = 6568.487529 C = 6823.419127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.129 3.871 10 C -0.175 4.175 11 C -0.088 4.088 12 C -0.262 4.262 13 C 0.180 3.820 14 N -0.686 5.686 15 C 0.252 3.748 16 C -0.217 4.217 17 C -0.043 4.043 18 C -0.251 4.251 19 C 0.241 3.759 20 N -0.883 5.883 21 C -0.266 4.266 22 C -0.255 4.255 23 H 0.280 0.720 24 H 0.120 0.880 25 H 0.090 0.910 26 H 0.095 0.905 27 H 0.398 0.602 28 H 0.130 0.870 29 H 0.117 0.883 30 H 0.110 0.890 31 H 0.393 0.607 32 H 0.394 0.606 33 H 0.113 0.887 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.029 -12.412 1.705 12.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.142 4.142 3 Si 0.735 3.265 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.494 4.494 8 H 0.094 0.906 9 C 0.126 3.874 10 C -0.195 4.195 11 C -0.107 4.107 12 C -0.283 4.283 13 C 0.086 3.914 14 N -0.306 5.306 15 C 0.149 3.851 16 C -0.240 4.240 17 C -0.062 4.062 18 C -0.275 4.275 19 C 0.137 3.863 20 N -0.423 5.423 21 C -0.293 4.293 22 C -0.277 4.277 23 H 0.091 0.909 24 H 0.138 0.862 25 H 0.108 0.892 26 H 0.113 0.887 27 H 0.233 0.767 28 H 0.148 0.852 29 H 0.135 0.865 30 H 0.128 0.872 31 H 0.221 0.779 32 H 0.222 0.778 33 H 0.131 0.869 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.335 -12.087 1.674 12.207 hybrid contribution 0.850 0.323 0.137 0.919 sum 0.514 -11.764 1.811 11.913 Atomic orbital electron populations 1.69804 1.07416 1.29097 1.36114 1.25877 0.94806 1.01163 0.92352 0.86339 0.80019 0.80281 0.79861 1.18910 1.20359 1.19102 1.19511 0.96193 0.90590 1.43138 0.90633 1.17389 0.91096 0.91339 0.87578 1.21361 0.98989 0.96723 1.02389 1.20537 0.98189 0.92901 0.99082 1.20241 1.01790 0.97360 1.08931 1.17420 0.95749 0.83762 0.94482 1.42233 1.07368 1.13234 1.67782 1.17507 0.90206 0.86975 0.90415 1.20913 0.93381 1.00451 1.09253 1.20629 0.98492 0.91827 0.95280 1.20277 0.94644 0.96848 1.15707 1.17381 0.92533 0.84086 0.92337 1.42398 1.14708 1.04695 1.80464 1.19990 1.00065 0.90789 1.18436 1.20730 1.05345 0.91694 1.09917 0.90921 0.86211 0.89154 0.88704 0.76691 0.85206 0.86524 0.87223 0.77915 0.77845 0.86876 0.88864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.68 10.83 55.55 0.60 -20.08 16 2 C 0.07 1.88 5.23 -17.34 -0.09 1.79 16 3 Si 0.91 18.71 29.58 -169.99 -5.03 13.68 16 4 H -0.26 -5.38 7.11 56.52 0.40 -4.97 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.46 -12.30 9.06 -37.74 -0.34 -12.64 16 8 H 0.08 1.92 7.87 -52.49 -0.41 1.51 16 9 C 0.13 3.43 5.56 -106.85 -0.59 2.84 16 10 C -0.17 -4.54 8.67 -38.83 -0.34 -4.88 16 11 C -0.09 -2.08 10.02 -39.69 -0.40 -2.47 16 12 C -0.26 -5.94 7.75 -39.08 -0.30 -6.24 16 13 C 0.18 4.03 5.90 -83.83 -0.49 3.54 16 14 N -0.69 -12.92 5.46 -8.47 -0.05 -12.96 16 15 C 0.25 4.48 6.04 -83.79 -0.51 3.97 16 16 C -0.22 -3.91 7.87 -39.34 -0.31 -4.22 16 17 C -0.04 -0.65 10.03 -39.64 -0.40 -1.05 16 18 C -0.25 -3.49 9.89 -39.33 -0.39 -3.88 16 19 C 0.24 3.31 6.75 -83.82 -0.57 2.74 16 20 N -0.88 -8.64 9.09 32.40 0.29 -8.35 16 21 C -0.27 -4.07 9.79 -39.18 -0.38 -4.45 16 22 C -0.25 -6.22 9.70 -38.67 -0.37 -6.59 16 23 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 24 H 0.12 3.21 6.17 -52.48 -0.32 2.89 16 25 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 26 H 0.09 2.05 6.56 -52.48 -0.34 1.71 16 27 H 0.40 6.58 8.89 -40.82 -0.36 6.21 16 28 H 0.13 2.62 6.31 -52.49 -0.33 2.28 16 29 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.11 1.27 8.06 -52.48 -0.42 0.84 16 31 H 0.39 3.19 8.84 -40.82 -0.36 2.83 16 32 H 0.39 3.03 8.84 -40.82 -0.36 2.66 16 33 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 290.59 15.07 4.38 4.38 Total: -1.00 -28.35 290.59 -9.03 -37.38 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: -3.75 Total: 17.49 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: -5.49 Total: -31.54 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.85 Total: -41.39 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.35 -9.03 -37.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313414138.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.856 kcal (2) G-P(sol) polarization free energy of solvation -28.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds