Wall clock time and date at job start Mon Mar 30 2020 06:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30838 * 1 3 3 Si 1.86799 * 119.99606 * 2 1 4 4 H 1.48508 * 109.46951 * 239.99556 * 3 2 1 5 5 H 1.48495 * 109.47575 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47009 * 120.00123 * 3 2 1 7 7 C 1.39925 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99915 * 192.17979 * 7 2 1 9 9 C 1.41413 * 119.99684 * 12.18688 * 7 2 1 10 10 C 1.40790 * 120.21041 * 27.51884 * 9 7 2 11 11 C 1.37648 * 119.89910 * 179.97438 * 10 9 7 12 12 C 1.38519 * 120.32226 * 359.73932 * 11 10 9 13 13 C 1.39310 * 120.42552 * 0.51904 * 12 11 10 14 14 N 1.39722 * 119.95331 * 179.75674 * 13 12 11 15 15 C 1.39707 * 120.00168 * 328.12106 * 14 13 12 16 16 C 1.39006 * 120.04130 * 334.55554 * 15 14 13 17 17 C 1.38119 * 120.07779 * 180.27702 * 16 15 14 18 18 C 1.38187 * 120.14543 * 359.97438 * 17 16 15 19 19 C 1.38954 * 120.07935 * 0.02562 * 18 17 16 20 20 N 1.39668 * 120.03735 * 179.97438 * 19 18 17 21 21 C 1.38772 * 120.03831 * 154.82651 * 15 14 13 22 22 C 1.38336 * 120.09189 * 359.48512 * 13 12 11 23 23 H 0.96996 * 120.00002 * 0.02562 * 1 2 3 24 24 H 1.08006 * 120.05108 * 359.95579 * 10 9 7 25 25 H 1.07994 * 119.83920 * 180.02562 * 11 10 9 26 26 H 1.08007 * 119.78643 * 180.25256 * 12 11 10 27 27 H 0.97003 * 119.99845 * 148.11953 * 14 13 12 28 28 H 1.08002 * 119.95931 * 0.24739 * 16 15 14 29 29 H 1.08002 * 119.92881 * 179.97438 * 17 16 15 30 30 H 1.08009 * 119.95884 * 180.02562 * 18 17 16 31 31 H 0.96996 * 119.99948 * 180.02562 * 20 19 18 32 32 H 0.96998 * 120.00235 * 0.02911 * 20 19 18 33 33 H 1.08002 * 120.07630 * 359.70308 * 21 15 14 34 34 H 1.07993 * 120.16232 * 180.23033 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0698 -1.2221 0.1979 9 6 1.3249 -2.4227 -0.2575 10 6 0.1615 -2.4247 -1.0503 11 6 -0.4982 -3.6072 -1.2978 12 6 -0.0201 -4.7975 -0.7749 13 6 1.1268 -4.8104 0.0158 14 7 1.5976 -6.0159 0.5425 15 6 0.6976 -7.0306 0.8775 16 6 -0.6175 -6.7160 1.1997 17 6 -1.5063 -7.7181 1.5365 18 6 -1.0920 -9.0363 1.5539 19 6 0.2211 -9.3579 1.2329 20 7 0.6391 -10.6904 1.2513 21 6 1.1170 -8.3533 0.8944 22 6 1.8034 -3.6321 0.2757 23 1 -0.4850 0.8400 -0.0004 24 1 -0.2131 -1.4998 -1.4635 25 1 -1.3903 -3.6077 -1.9065 26 1 -0.5422 -5.7209 -0.9779 27 1 2.5493 -6.1482 0.6755 28 1 -0.9444 -5.6868 1.1871 29 1 -2.5274 -7.4709 1.7869 30 1 -1.7897 -9.8175 1.8174 31 1 1.5560 -10.9142 1.0275 32 1 0.0125 -11.3920 1.4878 33 1 2.1381 -8.6007 0.6441 34 1 2.6947 -3.6413 0.8854 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313414138.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:59 Heat of formation + Delta-G solvation = 27.057997 kcal Electronic energy + Delta-G solvation = -17310.754533 eV Core-core repulsion = 14592.644804 eV Total energy + Delta-G solvation = -2718.109729 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.77619 -39.28574 -36.94821 -35.22648 -34.44747 -31.77149 -31.36896 -29.29102 -28.56389 -27.13241 -23.62162 -23.29098 -22.41804 -21.71873 -19.29863 -18.43116 -17.71291 -17.28844 -16.81067 -16.68385 -16.26921 -15.73594 -15.17809 -14.83413 -14.53318 -14.31761 -14.04112 -14.00629 -13.47379 -13.10956 -12.85925 -12.71970 -12.53109 -12.15883 -12.11378 -11.85751 -11.68650 -11.33357 -11.08615 -10.76527 -9.53314 -9.35748 -8.60202 -8.47370 -7.91873 -6.36307 0.57697 0.79299 1.00157 1.30524 1.39830 1.51492 1.57299 2.22692 2.54371 2.77530 3.11973 3.17248 3.76019 4.12973 4.40330 4.45354 4.53803 4.65925 4.74159 4.80515 5.00019 5.05654 5.11843 5.24017 5.35226 5.42080 5.47002 5.67747 5.78599 5.85331 5.94090 6.07112 6.14824 6.26023 6.58606 6.67654 6.80694 6.93362 6.96718 7.10398 7.12643 8.38537 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.049031 B = 0.004262 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.933980 B = 6568.487529 C = 6823.419127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.033 3.967 3 Si 0.985 3.015 4 H -0.260 1.260 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.501 4.501 8 H 0.075 0.925 9 C 0.102 3.898 10 C -0.203 4.203 11 C -0.087 4.087 12 C -0.260 4.260 13 C 0.194 3.806 14 N -0.685 5.685 15 C 0.227 3.773 16 C -0.246 4.246 17 C -0.043 4.043 18 C -0.245 4.245 19 C 0.246 3.754 20 N -0.865 5.865 21 C -0.267 4.267 22 C -0.274 4.274 23 H 0.287 0.713 24 H 0.104 0.896 25 H 0.112 0.888 26 H 0.108 0.892 27 H 0.408 0.592 28 H 0.099 0.901 29 H 0.135 0.865 30 H 0.140 0.860 31 H 0.405 0.595 32 H 0.408 0.592 33 H 0.130 0.870 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.025 -14.614 2.114 14.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.181 4.181 3 Si 0.806 3.194 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.185 1.185 7 C -0.531 4.531 8 H 0.093 0.907 9 C 0.099 3.901 10 C -0.224 4.224 11 C -0.106 4.106 12 C -0.282 4.282 13 C 0.098 3.902 14 N -0.307 5.307 15 C 0.127 3.873 16 C -0.270 4.270 17 C -0.063 4.063 18 C -0.269 4.269 19 C 0.139 3.861 20 N -0.405 5.405 21 C -0.294 4.294 22 C -0.297 4.297 23 H 0.097 0.903 24 H 0.122 0.878 25 H 0.130 0.870 26 H 0.126 0.874 27 H 0.244 0.756 28 H 0.117 0.883 29 H 0.153 0.847 30 H 0.158 0.842 31 H 0.234 0.766 32 H 0.238 0.762 33 H 0.148 0.852 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.278 -14.388 2.098 14.543 hybrid contribution 0.756 0.695 0.068 1.029 sum 0.477 -13.692 2.166 13.871 Atomic orbital electron populations 1.69877 1.08879 1.30391 1.36428 1.26754 0.95602 1.04436 0.91272 0.85214 0.78664 0.75586 0.79970 1.18409 1.19197 1.18539 1.19793 0.96450 0.91786 1.45064 0.90693 1.17738 0.91774 0.92389 0.88173 1.21282 1.00026 0.96971 1.04079 1.20786 0.98528 0.92494 0.98820 1.20396 1.01903 0.97433 1.08462 1.17427 0.94918 0.84611 0.93200 1.42102 1.08174 1.12409 1.68033 1.17700 0.90024 0.87618 0.91970 1.20807 0.94411 0.99723 1.12048 1.20862 0.98973 0.91989 0.94451 1.20633 0.95270 0.96881 1.14101 1.17497 0.92271 0.85358 0.90963 1.42361 1.15746 1.03429 1.78960 1.20156 1.01243 0.89984 1.18048 1.20841 1.06108 0.92034 1.10683 0.90255 0.87823 0.86996 0.87437 0.75559 0.88319 0.84692 0.84180 0.76617 0.76175 0.85212 0.88457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.36 10.83 21.82 0.24 -44.12 16 2 C 0.03 1.72 5.23 85.25 0.45 2.17 16 3 Si 0.99 38.88 29.58 68.60 2.03 40.91 16 4 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 5 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 6 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 7 C -0.50 -27.65 9.06 23.46 0.21 -27.43 16 8 H 0.07 3.97 7.87 -2.91 -0.02 3.94 16 9 C 0.10 5.68 5.56 -21.31 -0.12 5.56 16 10 C -0.20 -11.05 8.67 22.75 0.20 -10.85 16 11 C -0.09 -4.23 10.02 22.20 0.22 -4.00 16 12 C -0.26 -11.97 7.75 22.59 0.18 -11.80 16 13 C 0.19 8.89 5.90 38.16 0.23 9.11 16 14 N -0.68 -25.76 5.46 -180.72 -0.99 -26.75 16 15 C 0.23 7.91 6.04 38.20 0.23 8.14 16 16 C -0.25 -8.83 7.87 22.43 0.18 -8.65 16 17 C -0.04 -1.25 10.03 22.23 0.22 -1.02 16 18 C -0.25 -5.94 9.89 22.43 0.22 -5.72 16 19 C 0.25 5.88 6.75 38.20 0.26 6.13 16 20 N -0.86 -13.15 9.09 -51.42 -0.47 -13.61 16 21 C -0.27 -7.54 9.79 22.53 0.22 -7.32 16 22 C -0.27 -13.89 9.70 22.86 0.22 -13.67 16 23 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 24 H 0.10 5.86 6.17 -2.91 -0.02 5.84 16 25 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 26 H 0.11 4.64 6.56 -2.91 -0.02 4.62 16 27 H 0.41 13.36 8.89 -92.71 -0.82 12.54 16 28 H 0.10 4.11 6.31 -2.91 -0.02 4.09 16 29 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 30 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 31 H 0.40 4.83 8.84 -92.71 -0.82 4.01 16 32 H 0.41 4.31 8.84 -92.71 -0.82 3.49 16 33 H 0.13 3.15 8.06 -2.91 -0.02 3.12 16 34 H 0.10 4.69 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -63.20 290.59 2.42 -60.79 By element: Atomic # 1 Polarization: 43.44 SS G_CDS: -1.31 Total: 42.13 kcal Atomic # 6 Polarization: -62.26 SS G_CDS: 2.91 Total: -59.34 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -1.22 Total: -84.48 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Total: -63.20 2.42 -60.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313414138.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.845 kcal (2) G-P(sol) polarization free energy of solvation -63.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds