Wall clock time and date at job start Mon Mar 30 2020 06:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86800 * 119.99955 * 2 1 4 4 H 1.48502 * 109.47125 * 239.99506 * 3 2 1 5 5 H 1.48499 * 109.47245 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47030 * 119.99655 * 3 2 1 7 7 C 1.39935 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99669 * 197.88159 * 7 2 1 9 9 C 1.41406 * 119.99765 * 17.88089 * 7 2 1 10 10 C 1.40786 * 120.20824 * 204.42026 * 9 7 2 11 11 C 1.37642 * 119.89431 * 180.02562 * 10 9 7 12 12 C 1.38516 * 120.32528 * 359.74104 * 11 10 9 13 13 C 1.39288 * 120.42815 * 0.51854 * 12 11 10 14 14 N 1.39683 * 119.96007 * 179.76456 * 13 12 11 15 15 C 1.46505 * 119.99479 * 359.71491 * 14 13 12 16 16 C 1.50694 * 109.47127 * 180.02562 * 15 14 13 17 17 C 1.38231 * 119.61776 * 95.00497 * 16 15 14 18 18 C 1.38622 * 119.16327 * 180.02562 * 17 16 15 19 19 C 1.38670 * 118.42282 * 0.02562 * 18 17 16 20 20 C 1.38180 * 119.16035 * 0.27395 * 19 18 17 21 21 N 1.31853 * 119.62368 * 275.02521 * 16 15 14 22 22 C 1.38323 * 120.09155 * 359.48362 * 13 12 11 23 23 H 0.97002 * 120.00111 * 0.02562 * 1 2 3 24 24 H 1.08003 * 120.04876 * 0.02562 * 10 9 7 25 25 H 1.08005 * 119.83425 * 180.02562 * 11 10 9 26 26 H 1.08008 * 119.78533 * 180.27499 * 12 11 10 27 27 H 0.96997 * 120.00727 * 179.72506 * 14 13 12 28 28 H 1.09004 * 109.46786 * 60.00422 * 15 14 13 29 29 H 1.09000 * 109.47628 * 300.00722 * 15 14 13 30 30 H 1.08006 * 120.41712 * 0.03921 * 17 16 15 31 31 H 1.08004 * 120.78893 * 180.02562 * 18 17 16 32 32 H 1.07999 * 120.42015 * 180.02562 * 19 18 17 33 33 H 1.08009 * 119.61699 * 179.70186 * 20 19 18 34 34 H 1.07998 * 120.15915 * 180.23753 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0962 1.6964 -1.2125 5 1 1.2774 2.7465 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0489 -1.2343 0.2877 9 6 1.3522 -2.4070 -0.3749 10 6 1.8261 -3.6500 0.0860 11 6 1.1831 -4.8094 -0.2839 12 6 0.0678 -4.7595 -1.1038 13 6 -0.4095 -3.5376 -1.5720 14 7 -1.5321 -3.4990 -2.4024 15 6 -2.2030 -4.7439 -2.7852 16 6 -3.3754 -4.4286 -3.6778 17 6 -3.2206 -4.4741 -5.0507 18 6 -4.3053 -4.1819 -5.8629 19 6 -5.5105 -3.8527 -5.2613 20 6 -5.5883 -3.8216 -3.8821 21 7 -4.5371 -4.1121 -3.1404 22 6 0.2233 -2.3616 -1.2112 23 1 -0.4850 0.8401 -0.0004 24 1 2.6929 -3.6937 0.7289 25 1 1.5472 -5.7624 0.0706 26 1 -0.4327 -5.6744 -1.3851 27 1 -1.8674 -2.6481 -2.7256 28 1 -2.5549 -5.2570 -1.8903 29 1 -1.5019 -5.3850 -3.3197 30 1 -2.2666 -4.7343 -5.4850 31 1 -4.2138 -4.2099 -6.9387 32 1 -6.3765 -3.6197 -5.8632 33 1 -6.5221 -3.5614 -3.4058 34 1 -0.1481 -1.4133 -1.5705 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313440424.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:18 Heat of formation + Delta-G solvation = 54.678383 kcal Electronic energy + Delta-G solvation = -17180.106593 eV Core-core repulsion = 14463.194573 eV Total energy + Delta-G solvation = -2716.912019 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.24302 -37.72393 -35.07375 -33.34067 -32.50891 -31.55572 -29.38351 -28.21423 -25.38496 -25.05630 -23.57016 -22.06566 -20.82484 -19.82793 -17.17631 -17.02452 -16.37843 -15.95923 -15.25399 -14.84843 -14.61547 -14.34911 -13.62426 -13.49291 -13.17270 -12.89857 -12.57393 -12.54400 -12.12982 -11.60514 -11.46224 -11.07096 -10.98782 -10.54931 -10.39671 -9.98818 -9.64979 -9.45696 -9.42303 -9.19782 -9.09258 -8.72595 -7.26279 -6.67955 -6.12892 -4.26510 0.97711 1.19487 2.92538 3.11945 3.15275 3.27729 3.38640 3.64839 4.01387 4.22759 4.54949 4.70738 4.74153 4.77649 4.96214 5.04842 5.44132 5.61028 5.71798 5.88771 5.96406 6.05665 6.17728 6.31540 6.59201 6.63782 6.91892 7.14310 7.18535 7.42138 7.48053 7.84207 7.96630 8.00904 8.14937 8.21864 8.53213 8.72518 8.88105 9.06016 9.16366 10.30694 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.023336 B = 0.004893 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.566355 B = 5721.395244 C = 6566.670500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.078 3.922 3 Si 0.904 3.096 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.466 4.466 8 H 0.076 0.924 9 C 0.139 3.861 10 C -0.257 4.257 11 C -0.065 4.065 12 C -0.300 4.300 13 C 0.218 3.782 14 N -0.753 5.753 15 C 0.187 3.813 16 C 0.122 3.878 17 C -0.157 4.157 18 C -0.079 4.079 19 C -0.177 4.177 20 C 0.097 3.903 21 N -0.469 5.469 22 C -0.231 4.231 23 H 0.278 0.722 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.390 0.610 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.137 0.863 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.155 0.845 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.798 -4.983 -10.397 14.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.139 4.139 3 Si 0.729 3.271 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.496 4.496 8 H 0.094 0.906 9 C 0.136 3.864 10 C -0.277 4.277 11 C -0.084 4.084 12 C -0.323 4.323 13 C 0.119 3.881 14 N -0.387 5.387 15 C 0.061 3.939 16 C -0.016 4.016 17 C -0.177 4.177 18 C -0.105 4.105 19 C -0.197 4.197 20 C -0.060 4.060 21 N -0.178 5.178 22 C -0.254 4.254 23 H 0.089 0.911 24 H 0.106 0.894 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.223 0.777 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.155 0.845 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.172 0.828 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.111 -5.014 -9.466 14.063 hybrid contribution 0.112 1.093 -1.049 1.519 sum -8.999 -3.922 -10.515 14.385 Atomic orbital electron populations 1.69868 1.07498 1.28876 1.35506 1.25877 0.94649 1.01057 0.92353 0.86447 0.80191 0.80598 0.79890 1.18941 1.20508 1.19073 1.19522 0.98072 0.91329 1.40678 0.90608 1.17304 0.90043 0.91841 0.87177 1.20862 1.04881 0.92915 1.09075 1.20275 0.95085 0.96265 0.96813 1.19875 1.04508 0.94349 1.13536 1.17625 0.86013 0.94439 0.90013 1.44254 1.31768 1.05794 1.56869 1.19873 0.88748 0.88947 0.96319 1.21484 0.93289 0.94820 0.92045 1.22074 1.00110 1.01174 0.94352 1.21589 0.92643 0.95792 1.00458 1.22152 0.98827 1.02155 0.96563 1.22808 0.97110 0.95282 0.90811 1.67574 0.99298 1.09871 1.41052 1.20714 1.02650 0.94986 1.07093 0.91141 0.89386 0.89596 0.89604 0.77684 0.91451 0.91704 0.84524 0.84860 0.84918 0.82772 0.86580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.20 10.96 55.55 0.61 -20.59 16 2 C 0.08 2.03 5.14 -17.34 -0.09 1.94 16 3 Si 0.90 19.20 29.60 -169.99 -5.03 14.17 16 4 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 7 C -0.47 -12.80 9.05 -37.74 -0.34 -13.14 16 8 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 9 C 0.14 3.86 5.57 -106.85 -0.60 3.27 16 10 C -0.26 -6.59 9.79 -38.84 -0.38 -6.97 16 11 C -0.07 -1.54 10.01 -39.70 -0.40 -1.94 16 12 C -0.30 -6.94 9.32 -39.09 -0.36 -7.30 16 13 C 0.22 5.21 6.64 -83.86 -0.56 4.65 16 14 N -0.75 -15.10 5.72 -59.86 -0.34 -15.45 16 15 C 0.19 3.10 5.21 -5.19 -0.03 3.07 16 16 C 0.12 1.79 6.15 -82.59 -0.51 1.28 16 17 C -0.16 -1.89 9.72 -39.44 -0.38 -2.27 16 18 C -0.08 -0.78 10.18 -39.28 -0.40 -1.18 16 19 C -0.18 -1.71 10.11 -39.44 -0.40 -2.11 16 20 C 0.10 1.15 11.18 -17.55 -0.20 0.95 16 21 N -0.47 -7.15 10.27 -9.47 -0.10 -7.25 16 22 C -0.23 -6.17 8.53 -38.67 -0.33 -6.50 16 23 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 24 H 0.09 2.13 8.06 -52.48 -0.42 1.71 16 25 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 26 H 0.09 1.77 6.70 -52.48 -0.35 1.42 16 27 H 0.39 7.77 8.47 -40.82 -0.35 7.42 16 28 H 0.07 1.18 7.93 -51.93 -0.41 0.77 16 29 H 0.06 0.99 7.85 -51.93 -0.41 0.58 16 30 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 31 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 32 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 33 H 0.16 1.40 8.06 -52.48 -0.42 0.98 16 34 H 0.12 3.22 6.16 -52.49 -0.32 2.89 16 LS Contribution 296.15 15.07 4.46 4.46 Total: -1.00 -30.19 296.15 -9.29 -39.48 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -3.93 Total: 11.43 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: -4.97 Total: -26.26 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: 0.17 Total: -43.28 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.17 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.19 -9.29 -39.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313440424.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.159 kcal (2) G-P(sol) polarization free energy of solvation -30.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds