Wall clock time and date at job start Mon Mar 30 2020 07:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39872 * 126.03842 * 2 1 4 4 N 1.30838 * 108.20312 * 180.02562 * 3 2 1 5 5 N 1.40088 * 108.20068 * 359.77854 * 4 3 2 6 6 C 1.46503 * 126.03204 * 180.22797 * 5 4 3 7 7 C 1.53000 * 109.47420 * 305.15988 * 6 5 4 8 8 S 1.81399 * 109.46983 * 179.97438 * 7 6 5 9 9 C 1.81397 * 102.99982 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.47164 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.47442 * 180.02562 * 11 10 9 13 13 H 1.08006 * 119.99619 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00341 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00072 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 119.99848 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47310 * 90.00169 * 16 14 12 18 18 H 1.48502 * 109.46915 * 209.99665 * 16 14 12 19 19 H 1.48503 * 109.47066 * 329.99492 * 16 14 12 20 20 C 1.34940 * 107.93023 * 0.36844 * 5 4 3 21 21 H 1.08999 * 109.46941 * 269.97134 * 1 2 3 22 22 H 1.08991 * 109.47234 * 29.97396 * 1 2 3 23 23 H 1.09002 * 109.46951 * 149.98010 * 1 2 3 24 24 H 1.08001 * 125.89521 * 359.97438 * 3 2 1 25 25 H 1.09005 * 109.46694 * 65.16147 * 6 5 4 26 26 H 1.08999 * 109.47197 * 185.15258 * 6 5 4 27 27 H 1.08996 * 109.47042 * 299.99805 * 7 6 5 28 28 H 1.09000 * 109.47085 * 59.99765 * 7 6 5 29 29 H 1.08997 * 109.47372 * 300.00154 * 9 8 7 30 30 H 1.09001 * 109.47006 * 60.00091 * 9 8 7 31 31 H 1.08997 * 109.47108 * 300.00350 * 10 9 8 32 32 H 1.09002 * 109.47068 * 60.00695 * 10 9 8 33 33 H 1.09002 * 109.47125 * 300.00553 * 11 10 9 34 34 H 1.09001 * 109.46987 * 60.00163 * 11 10 9 35 35 H 0.96994 * 120.00069 * 180.02562 * 15 14 12 36 36 H 1.08002 * 126.13053 * 179.90865 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7303 -0.0006 5 7 3.5844 -0.6705 0.0042 6 6 4.7746 -1.5247 0.0100 7 6 5.6762 -1.1513 -1.1684 8 16 7.1502 -2.2085 -1.1606 9 6 8.0784 -1.6251 -2.6058 10 6 9.3723 -2.4306 -2.7402 11 6 10.1548 -1.9389 -3.9595 12 6 11.4289 -2.7326 -4.0923 13 1 11.6579 -3.5098 -3.3780 14 6 12.3029 -2.4661 -5.1248 15 7 13.4150 -3.1584 -5.2403 16 14 11.9079 -1.1205 -6.3588 17 1 12.4689 0.1690 -5.8817 18 1 12.5060 -1.4640 -7.6740 19 1 10.4350 -0.9970 -6.5020 20 6 2.3032 -1.0942 -0.0006 21 1 -0.3633 -0.0005 1.0277 22 1 -0.3633 0.8901 -0.5134 23 1 -0.3633 -0.8898 -0.5142 24 1 1.9950 2.1578 -0.0004 25 1 5.3192 -1.3826 0.9435 26 1 4.4732 -2.5684 -0.0795 27 1 5.1316 -1.2934 -2.1018 28 1 5.9775 -0.1076 -1.0788 29 1 7.4736 -1.7560 -3.5032 30 1 8.3193 -0.5694 -2.4810 31 1 9.9768 -2.2992 -1.8428 32 1 9.1317 -3.4864 -2.8650 33 1 9.5499 -2.0706 -4.8567 34 1 10.3954 -0.8831 -3.8353 35 1 14.0300 -2.9707 -5.9665 36 1 1.9724 -2.1223 -0.0001 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340616686.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:19 Heat of formation + Delta-G solvation = 54.210482 kcal Electronic energy + Delta-G solvation = -15267.307372 eV Core-core repulsion = 12685.819014 eV Total energy + Delta-G solvation = -2581.488358 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.44566 -34.99373 -34.63549 -32.11776 -32.00186 -30.46502 -28.12211 -26.57169 -24.31837 -23.05730 -21.03705 -20.48992 -20.12878 -17.32510 -16.84466 -16.13927 -15.59560 -15.00826 -14.77205 -14.46722 -14.22715 -13.67684 -13.57422 -13.33873 -13.12376 -12.73272 -12.45242 -12.29459 -12.16778 -12.00394 -11.77595 -11.25964 -10.89829 -10.77426 -10.13444 -9.94088 -9.78749 -9.74728 -9.59411 -9.24938 -8.59722 -8.57407 -7.64237 -6.07387 -4.06141 1.39293 1.67540 2.44346 2.53392 2.64353 3.28183 3.35743 3.38320 4.13615 4.41840 4.47734 4.53445 4.69753 4.91438 4.98775 5.13315 5.25013 5.26296 5.32774 5.41420 5.41795 5.49806 5.58254 5.73137 5.86510 5.91379 6.35023 6.40015 6.44521 6.73172 6.76517 7.20329 7.32701 7.44728 7.73502 8.49713 8.97229 9.54249 11.05962 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.048011 B = 0.002912 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.065278 B = 9611.889437 C = 9974.628699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.246 4.246 3 C 0.047 3.953 4 N -0.292 5.292 5 N -0.369 5.369 6 C 0.154 3.846 7 C -0.106 4.106 8 S -0.260 6.260 9 C -0.073 4.073 10 C -0.087 4.087 11 C -0.007 4.007 12 C -0.522 4.522 13 H 0.073 0.927 14 C 0.067 3.933 15 N -0.902 5.902 16 Si 0.880 3.120 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.266 1.266 20 C 0.055 3.945 21 H 0.059 0.941 22 H 0.062 0.938 23 H 0.059 0.941 24 H 0.181 0.819 25 H 0.095 0.905 26 H 0.105 0.895 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.017 0.983 34 H 0.013 0.987 35 H 0.264 0.736 36 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.298 5.465 10.485 27.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.258 4.258 3 C -0.140 4.140 4 N -0.113 5.113 5 N -0.152 5.152 6 C 0.032 3.968 7 C -0.255 4.255 8 S -0.033 6.033 9 C -0.221 4.221 10 C -0.126 4.126 11 C -0.047 4.047 12 C -0.560 4.560 13 H 0.091 0.909 14 C -0.135 4.135 15 N -0.541 5.541 16 Si 0.708 3.292 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.191 1.191 20 C -0.091 4.091 21 H 0.078 0.922 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.198 0.802 25 H 0.113 0.887 26 H 0.123 0.877 27 H 0.101 0.899 28 H 0.112 0.888 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.035 0.965 34 H 0.031 0.969 35 H 0.073 0.927 36 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -23.526 4.902 11.105 26.472 hybrid contribution -1.181 1.391 -1.623 2.442 sum -24.706 6.293 9.481 27.201 Atomic orbital electron populations 1.20037 0.89310 1.02126 1.01456 1.20166 0.97145 0.91889 1.16595 1.23829 0.89976 0.99852 1.00293 1.77373 1.21265 0.88855 1.23790 1.48667 1.05269 1.04752 1.56498 1.21401 0.83300 0.92776 0.99315 1.23549 0.97391 1.03445 1.01127 1.86776 1.22248 1.51540 1.42720 1.23667 0.99973 1.03262 0.95230 1.21293 0.91569 0.98786 1.00984 1.19573 0.95818 0.96504 0.92770 1.21094 1.02581 1.19477 1.12821 0.90875 1.25028 0.94782 0.96130 0.97541 1.69909 1.10856 1.40889 1.32403 0.86771 0.79067 0.82491 0.80901 1.20247 1.21308 1.19086 1.22390 0.84106 1.00168 1.02454 0.92211 0.91907 0.92198 0.80162 0.88677 0.87659 0.89855 0.88787 0.90393 0.90298 0.91654 0.91673 0.96468 0.96872 0.92667 0.80986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.37 36.01 0.37 -0.05 16 2 C -0.25 -2.17 6.10 -105.05 -0.64 -2.81 16 3 C 0.05 0.47 11.96 -17.36 -0.21 0.26 16 4 N -0.29 -3.60 12.42 30.63 0.38 -3.22 16 5 N -0.37 -3.93 3.68 -61.36 -0.23 -4.15 16 6 C 0.15 1.47 6.52 -4.04 -0.03 1.44 16 7 C -0.11 -1.21 6.12 37.16 0.23 -0.99 16 8 S -0.26 -3.64 21.74 -107.50 -2.34 -5.98 16 9 C -0.07 -1.17 5.94 37.16 0.22 -0.95 16 10 C -0.09 -1.72 5.16 -26.73 -0.14 -1.86 16 11 C -0.01 -0.17 4.04 -27.89 -0.11 -0.29 16 12 C -0.52 -14.89 9.66 -34.44 -0.33 -15.23 16 13 H 0.07 2.24 7.99 -52.48 -0.42 1.83 16 14 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 15 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 16 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 20 C 0.05 0.48 11.36 -17.23 -0.20 0.29 16 21 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 22 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 23 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 24 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 25 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.11 0.78 8.07 -51.93 -0.42 0.37 16 27 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.09 1.18 8.14 -51.92 -0.42 0.75 16 29 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.08 1.22 8.14 -51.92 -0.42 0.80 16 31 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 34 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 35 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 36 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 319.39 15.07 4.81 4.81 Total: -1.00 -32.15 319.39 -8.04 -40.19 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -5.85 Total: -3.24 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: -0.93 Total: -18.33 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.93 Total: -34.47 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -2.34 Total: -5.98 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.15 -8.04 -40.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340616686.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.405 kcal (2) G-P(sol) polarization free energy of solvation -32.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds