Wall clock time and date at job start Mon Mar 30 2020 07:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33635 * 122.74484 * 2 1 4 4 S 1.76195 * 107.92435 * 180.02562 * 3 2 1 5 5 C 1.70982 * 90.28098 * 359.97438 * 4 3 2 6 6 C 1.50699 * 124.91405 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.46849 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47369 * 59.97733 * 6 5 4 9 9 C 1.53005 * 109.47060 * 299.97346 * 6 5 4 10 10 N 1.46902 * 109.46911 * 185.00497 * 9 6 5 11 11 C 1.46894 * 110.99965 * 180.02562 * 10 9 6 12 12 H 1.09004 * 109.47000 * 324.99702 * 11 10 9 13 13 C 1.53003 * 109.47632 * 84.99563 * 11 10 9 14 14 C 1.50702 * 109.47454 * 204.99885 * 11 10 9 15 15 H 1.08003 * 119.99686 * 359.97438 * 14 11 10 16 16 C 1.37872 * 120.00605 * 179.97438 * 14 11 10 17 17 N 1.31523 * 119.99611 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 120.00238 * 179.97438 * 16 14 11 19 19 H 1.48492 * 109.47120 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47103 * 120.00077 * 18 16 14 21 21 H 1.48500 * 109.46868 * 239.99722 * 18 16 14 22 22 N 1.29027 * 110.16710 * 359.73559 * 5 4 3 23 23 H 1.08999 * 109.46995 * 90.02697 * 1 2 3 24 24 H 1.08994 * 109.46790 * 210.02384 * 1 2 3 25 25 H 1.08997 * 109.47305 * 330.02825 * 1 2 3 26 26 H 1.08001 * 126.04187 * 359.97438 * 3 2 1 27 27 H 1.09002 * 109.47013 * 180.02562 * 8 6 5 28 28 H 1.09003 * 109.46968 * 299.99723 * 8 6 5 29 29 H 1.08997 * 109.47081 * 59.99599 * 8 6 5 30 30 H 1.09002 * 109.47064 * 305.00363 * 9 6 5 31 31 H 1.08995 * 109.47242 * 65.00865 * 9 6 5 32 32 H 1.00903 * 111.00454 * 56.04225 * 10 9 6 33 33 H 1.09003 * 109.46816 * 300.00333 * 13 11 10 34 34 H 1.09004 * 109.46814 * 60.00025 * 13 11 10 35 35 H 1.08998 * 109.47450 * 179.97438 * 13 11 10 36 36 H 0.96998 * 119.99407 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9332 0.6733 -0.0007 5 6 3.5040 -0.9818 -0.0002 6 6 4.4836 -2.1269 0.0001 7 1 3.9389 -3.0710 0.0008 8 6 5.3637 -2.0449 1.2489 9 6 5.3627 -2.0463 -1.2496 10 7 6.2356 -3.2263 -1.3112 11 6 7.0964 -3.1828 -2.5006 12 1 6.5515 -2.7265 -3.3271 13 6 8.3467 -2.3553 -2.1955 14 6 7.5016 -4.5842 -2.8791 15 1 7.1546 -5.4232 -2.2941 16 6 8.3152 -4.7953 -3.9719 17 7 8.7374 -3.7736 -4.6846 18 14 8.8180 -6.5322 -4.4405 19 1 8.2153 -7.4966 -3.4857 20 1 8.3412 -6.8319 -5.8147 21 1 10.2976 -6.6489 -4.3935 22 7 2.2199 -1.1083 0.0060 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3633 -0.8897 0.5142 25 1 -0.3634 0.8902 0.5134 26 1 1.8391 2.1308 -0.0004 27 1 6.0725 -2.8730 1.2488 28 1 5.9085 -1.1008 1.2482 29 1 4.7374 -2.1023 2.1391 30 1 4.7306 -2.0152 -2.1371 31 1 5.9735 -1.1446 -1.2067 32 1 5.6948 -4.0779 -1.2867 33 1 8.0536 -1.3417 -1.9218 34 1 8.8916 -2.8116 -1.3691 35 1 8.9857 -2.3235 -3.0780 36 1 9.3101 -3.9221 -5.4532 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380084824.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:26 Heat of formation + Delta-G solvation = 27.895544 kcal Electronic energy + Delta-G solvation = -16372.215034 eV Core-core repulsion = 13789.585575 eV Total energy + Delta-G solvation = -2582.629459 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.87932 -36.81423 -34.35362 -32.16342 -30.93248 -28.22876 -27.65870 -25.65213 -25.14392 -23.60441 -20.60619 -19.97650 -19.43567 -17.50920 -16.44545 -15.63985 -14.97373 -14.77553 -14.50729 -13.99163 -13.81085 -13.33665 -12.94370 -12.72851 -12.66076 -12.37784 -12.06975 -11.57009 -11.44321 -11.33160 -11.12242 -10.95697 -10.70146 -10.56294 -10.23814 -10.12956 -9.96199 -9.56742 -9.33943 -8.83850 -8.63151 -8.48350 -7.31642 -6.03257 -4.09638 0.74691 1.42477 1.82857 2.79746 3.28818 3.36735 3.40941 4.01664 4.40538 4.87893 5.07165 5.14601 5.18834 5.27288 5.28756 5.44873 5.55722 5.59483 5.73682 5.81184 6.00141 6.07885 6.19844 6.29319 6.43891 6.53613 6.87071 7.13105 7.21650 7.47919 7.77450 7.80560 7.88310 8.25915 8.35123 8.63799 9.00629 9.56457 11.03198 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.037518 B = 0.004240 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.127830 B = 6602.595865 C = 6749.975734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.066 3.934 3 C -0.280 4.280 4 S 0.125 5.875 5 C 0.077 3.923 6 C -0.018 4.018 7 H 0.098 0.902 8 C -0.134 4.134 9 C 0.069 3.931 10 N -0.683 5.683 11 C 0.211 3.789 12 H 0.001 0.999 13 C -0.124 4.124 14 C -0.517 4.517 15 H 0.061 0.939 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.897 3.103 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.284 1.284 22 N -0.480 5.480 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.173 0.827 27 H 0.087 0.913 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.023 0.977 31 H 0.068 0.932 32 H 0.332 0.668 33 H 0.004 0.996 34 H 0.032 0.968 35 H 0.080 0.920 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.716 9.294 9.807 17.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.066 4.066 3 C -0.419 4.419 4 S 0.381 5.619 5 C -0.202 4.202 6 C -0.041 4.041 7 H 0.116 0.884 8 C -0.192 4.192 9 C -0.062 4.062 10 N -0.314 5.314 11 C 0.104 3.896 12 H 0.019 0.981 13 C -0.182 4.182 14 C -0.556 4.556 15 H 0.079 0.921 16 C -0.140 4.140 17 N -0.529 5.529 18 Si 0.725 3.275 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.210 1.210 22 N -0.195 5.195 23 H 0.093 0.907 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.190 0.810 27 H 0.106 0.894 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.041 0.959 31 H 0.086 0.914 32 H 0.149 0.851 33 H 0.023 0.977 34 H 0.051 0.949 35 H 0.099 0.901 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.387 9.643 10.059 17.381 hybrid contribution -1.279 -0.932 -1.133 1.946 sum -11.666 8.711 8.927 17.079 Atomic orbital electron populations 1.20334 0.87393 1.03076 1.02844 1.20306 0.98163 0.86722 1.01426 1.26781 0.95732 1.03734 1.15663 1.84050 1.06714 1.03395 1.67757 1.27268 0.93813 0.98363 1.00718 1.19976 0.92552 0.93579 0.97961 0.88401 1.21785 0.99175 1.03593 0.94644 1.21966 0.93829 0.96973 0.93450 1.60720 1.22838 1.02426 1.45437 1.19118 0.89834 0.95998 0.84680 0.98150 1.21711 1.00031 0.95012 1.01470 1.21292 1.30669 0.92002 1.11629 0.92080 1.24924 0.95891 0.97102 0.96127 1.69914 1.35059 1.29671 1.18230 0.86463 0.78307 0.84548 0.78215 1.19720 1.21125 1.20983 1.66182 1.04616 1.31474 1.17191 0.90743 0.90675 0.90956 0.80984 0.89430 0.92768 0.93335 0.95918 0.91400 0.85081 0.97743 0.94884 0.90119 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.31 36.01 0.37 -0.35 16 2 C 0.07 0.86 6.74 -84.22 -0.57 0.29 16 3 C -0.28 -3.26 11.13 29.12 0.32 -2.94 16 4 S 0.13 1.61 22.67 -107.50 -2.44 -0.83 16 5 C 0.08 1.15 6.03 -13.46 -0.08 1.07 16 6 C -0.02 -0.28 2.96 -91.77 -0.27 -0.55 16 7 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 8 C -0.13 -1.83 8.98 37.16 0.33 -1.50 16 9 C 0.07 1.24 4.73 -3.82 -0.02 1.23 16 10 N -0.68 -14.16 5.75 -107.95 -0.62 -14.78 16 11 C 0.21 5.31 2.60 -68.87 -0.18 5.13 16 12 H 0.00 0.02 7.80 -51.93 -0.41 -0.38 16 13 C -0.12 -3.06 9.19 37.16 0.34 -2.71 16 14 C -0.52 -14.08 8.59 -34.44 -0.30 -14.38 16 15 H 0.06 1.64 7.62 -52.48 -0.40 1.24 16 16 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 17 N -0.89 -25.40 11.32 55.43 0.63 -24.77 16 18 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 N -0.48 -7.43 10.53 -8.05 -0.08 -7.52 16 23 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 26 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 27 H 0.09 1.28 7.75 -51.93 -0.40 0.87 16 28 H 0.05 0.72 7.93 -51.93 -0.41 0.31 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.02 0.44 8.06 -51.93 -0.42 0.02 16 31 H 0.07 1.24 7.39 -51.93 -0.38 0.85 16 32 H 0.33 6.73 8.23 -39.29 -0.32 6.41 16 33 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 36 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 311.20 15.07 4.69 4.69 Total: -1.00 -29.28 311.20 -8.52 -37.81 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -5.54 Total: 2.33 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -0.14 Total: -13.12 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: -0.08 Total: -47.07 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.44 Total: -0.83 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.28 -8.52 -37.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380084824.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.703 kcal (2) G-P(sol) polarization free energy of solvation -29.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds