Wall clock time and date at job start Mon Mar 30 2020 07:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33635 * 122.74484 * 2 1 4 4 S 1.76195 * 107.92435 * 180.02562 * 3 2 1 5 5 C 1.70982 * 90.28098 * 359.97438 * 4 3 2 6 6 C 1.50699 * 124.91405 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.46849 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47369 * 59.97733 * 6 5 4 9 9 C 1.53005 * 109.47060 * 299.97346 * 6 5 4 10 10 N 1.46902 * 109.46911 * 185.00497 * 9 6 5 11 11 C 1.46894 * 110.99965 * 180.02562 * 10 9 6 12 12 H 1.09004 * 109.47000 * 324.99702 * 11 10 9 13 13 C 1.53003 * 109.47632 * 84.99563 * 11 10 9 14 14 C 1.50702 * 109.47454 * 204.99885 * 11 10 9 15 15 H 1.08003 * 119.99686 * 359.97438 * 14 11 10 16 16 C 1.37872 * 120.00605 * 179.97438 * 14 11 10 17 17 N 1.31523 * 119.99611 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 120.00238 * 179.97438 * 16 14 11 19 19 H 1.48492 * 109.47120 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47103 * 120.00077 * 18 16 14 21 21 H 1.48500 * 109.46868 * 239.99722 * 18 16 14 22 22 N 1.29027 * 110.16710 * 359.73559 * 5 4 3 23 23 H 1.08999 * 109.46995 * 90.02697 * 1 2 3 24 24 H 1.08994 * 109.46790 * 210.02384 * 1 2 3 25 25 H 1.08997 * 109.47305 * 330.02825 * 1 2 3 26 26 H 1.08001 * 126.04187 * 359.97438 * 3 2 1 27 27 H 1.09002 * 109.47013 * 180.02562 * 8 6 5 28 28 H 1.09003 * 109.46968 * 299.99723 * 8 6 5 29 29 H 1.08997 * 109.47081 * 59.99599 * 8 6 5 30 30 H 1.09002 * 109.47064 * 305.00363 * 9 6 5 31 31 H 1.08995 * 109.47242 * 65.00865 * 9 6 5 32 32 H 1.00903 * 111.00454 * 56.04225 * 10 9 6 33 33 H 1.09003 * 109.46816 * 300.00333 * 13 11 10 34 34 H 1.09004 * 109.46814 * 60.00025 * 13 11 10 35 35 H 1.08998 * 109.47450 * 179.97438 * 13 11 10 36 36 H 0.96998 * 119.99407 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9332 0.6733 -0.0007 5 6 3.5040 -0.9818 -0.0002 6 6 4.4836 -2.1269 0.0001 7 1 3.9389 -3.0710 0.0008 8 6 5.3637 -2.0449 1.2489 9 6 5.3627 -2.0463 -1.2496 10 7 6.2356 -3.2263 -1.3112 11 6 7.0964 -3.1828 -2.5006 12 1 6.5515 -2.7265 -3.3271 13 6 8.3467 -2.3553 -2.1955 14 6 7.5016 -4.5842 -2.8791 15 1 7.1546 -5.4232 -2.2941 16 6 8.3152 -4.7953 -3.9719 17 7 8.7374 -3.7736 -4.6846 18 14 8.8180 -6.5322 -4.4405 19 1 8.2153 -7.4966 -3.4857 20 1 8.3412 -6.8319 -5.8147 21 1 10.2976 -6.6489 -4.3935 22 7 2.2199 -1.1083 0.0060 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3633 -0.8897 0.5142 25 1 -0.3634 0.8902 0.5134 26 1 1.8391 2.1308 -0.0004 27 1 6.0725 -2.8730 1.2488 28 1 5.9085 -1.1008 1.2482 29 1 4.7374 -2.1023 2.1391 30 1 4.7306 -2.0152 -2.1371 31 1 5.9735 -1.1446 -1.2067 32 1 5.6948 -4.0779 -1.2867 33 1 8.0536 -1.3417 -1.9218 34 1 8.8916 -2.8116 -1.3691 35 1 8.9857 -2.3235 -3.0780 36 1 9.3101 -3.9221 -5.4532 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380084824.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:26 Heat of formation + Delta-G solvation = 9.479795 kcal Electronic energy + Delta-G solvation = -16373.013600 eV Core-core repulsion = 13789.585575 eV Total energy + Delta-G solvation = -2583.428026 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.91065 -38.38424 -35.99354 -33.89927 -32.09747 -29.98400 -28.52150 -27.41237 -26.69488 -24.98466 -21.93890 -21.70084 -20.58807 -18.71894 -18.28490 -17.03387 -16.46176 -16.18494 -15.89778 -15.43589 -15.22048 -14.69219 -14.25865 -14.02185 -13.77553 -13.50343 -13.34475 -13.14996 -12.86809 -12.83281 -12.57451 -12.51409 -12.28451 -12.19920 -12.05998 -11.94845 -11.68683 -10.88192 -10.64086 -10.57484 -10.37074 -9.62991 -9.10749 -8.13074 -6.27057 -0.27207 0.42254 0.82946 1.42228 1.44137 1.55918 1.78215 2.42013 2.94681 3.16159 3.67101 3.85981 4.00490 4.19759 4.26933 4.34704 4.47305 4.67887 4.72992 4.76810 4.84527 4.86577 4.95911 4.99692 5.09377 5.14678 5.22458 5.36926 5.40840 5.47657 5.67281 5.86461 6.22803 6.43126 6.73505 6.79204 6.98253 7.43416 8.92961 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.037518 B = 0.004240 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.127830 B = 6602.595865 C = 6749.975734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.041 3.959 3 C -0.265 4.265 4 S 0.137 5.863 5 C 0.049 3.951 6 C -0.008 4.008 7 H 0.092 0.908 8 C -0.127 4.127 9 C 0.077 3.923 10 N -0.674 5.674 11 C 0.214 3.786 12 H -0.034 1.034 13 C -0.112 4.112 14 C -0.536 4.536 15 H 0.062 0.938 16 C 0.012 3.988 17 N -0.918 5.918 18 Si 0.963 3.037 19 H -0.265 1.265 20 H -0.282 1.282 21 H -0.280 1.280 22 N -0.503 5.503 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.099 0.901 26 H 0.207 0.793 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.005 0.995 31 H 0.066 0.934 32 H 0.334 0.666 33 H 0.022 0.978 34 H 0.032 0.968 35 H 0.056 0.944 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.561 9.796 10.729 19.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.090 4.090 3 C -0.403 4.403 4 S 0.392 5.608 5 C -0.229 4.229 6 C -0.030 4.030 7 H 0.110 0.890 8 C -0.185 4.185 9 C -0.054 4.054 10 N -0.305 5.305 11 C 0.106 3.894 12 H -0.016 1.016 13 C -0.171 4.171 14 C -0.574 4.574 15 H 0.080 0.920 16 C -0.187 4.187 17 N -0.558 5.558 18 Si 0.789 3.211 19 H -0.189 1.189 20 H -0.208 1.208 21 H -0.205 1.205 22 N -0.219 5.219 23 H 0.099 0.901 24 H 0.089 0.911 25 H 0.118 0.882 26 H 0.224 0.776 27 H 0.096 0.904 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.023 0.977 31 H 0.085 0.915 32 H 0.152 0.848 33 H 0.041 0.959 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.246 10.144 11.000 18.718 hybrid contribution -1.085 -0.987 -1.415 2.037 sum -12.331 9.157 9.585 18.105 Atomic orbital electron populations 1.20435 0.85093 1.04236 1.03585 1.20859 0.99766 0.86425 1.01950 1.27220 0.94651 1.05006 1.13467 1.83962 1.07878 1.01802 1.67178 1.27092 0.93860 0.99233 1.02704 1.19756 0.92360 0.93955 0.96942 0.88996 1.21722 0.98918 1.03380 0.94484 1.21911 0.93468 0.95587 0.94430 1.60625 1.23366 1.03605 1.42865 1.18938 0.90350 0.95053 0.85062 1.01647 1.21528 0.99315 0.96031 1.00181 1.21619 1.30887 0.92925 1.11996 0.92002 1.25737 0.95870 1.00980 0.96082 1.70041 1.35499 1.31660 1.18590 0.85428 0.77926 0.79904 0.77882 1.18949 1.20826 1.20549 1.66181 1.05051 1.33264 1.17367 0.90134 0.91131 0.88226 0.77635 0.90370 0.92328 0.91823 0.97668 0.91515 0.84818 0.95910 0.94913 0.92568 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.23 10.31 71.24 0.73 -0.49 16 2 C 0.04 1.00 6.74 41.52 0.28 1.28 16 3 C -0.26 -5.47 11.13 66.77 0.74 -4.73 16 4 S 0.14 3.30 22.67 -56.49 -1.28 2.02 16 5 C 0.05 1.44 6.03 88.52 0.53 1.97 16 6 C -0.01 -0.24 2.96 -11.54 -0.03 -0.27 16 7 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 8 C -0.13 -3.36 8.98 71.98 0.65 -2.71 16 9 C 0.08 2.80 4.73 86.30 0.41 3.21 16 10 N -0.67 -28.18 5.75 -495.44 -2.85 -31.03 16 11 C 0.21 10.98 2.60 44.17 0.11 11.09 16 12 H -0.03 -1.95 7.80 -2.39 -0.02 -1.97 16 13 C -0.11 -5.58 9.19 71.98 0.66 -4.92 16 14 C -0.54 -29.42 8.59 25.60 0.22 -29.20 16 15 H 0.06 3.31 7.62 -2.91 -0.02 3.29 16 16 C 0.01 0.69 5.30 84.65 0.45 1.14 16 17 N -0.92 -53.10 11.32 21.45 0.24 -52.86 16 18 Si 0.96 43.49 29.54 68.60 2.03 45.52 16 19 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 22 N -0.50 -15.16 10.53 -179.40 -1.89 -17.05 16 23 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.10 1.07 8.12 -2.39 -0.02 1.05 16 26 H 0.21 2.70 8.06 -2.91 -0.02 2.68 16 27 H 0.08 2.21 7.75 -2.39 -0.02 2.19 16 28 H 0.06 1.48 7.93 -2.39 -0.02 1.46 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.01 0.20 8.06 -2.39 -0.02 0.18 16 31 H 0.07 2.43 7.39 -2.39 -0.02 2.41 16 32 H 0.33 13.71 8.23 -89.69 -0.74 12.97 16 33 H 0.02 1.00 7.45 -2.39 -0.02 0.98 16 34 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.06 3.07 6.07 -2.39 -0.01 3.06 16 36 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -62.61 311.20 1.33 -61.28 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.33 Total: 15.75 kcal Atomic # 6 Polarization: -28.38 SS G_CDS: 4.76 Total: -23.62 kcal Atomic # 7 Polarization: -96.45 SS G_CDS: -4.50 Total: -100.94 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -1.28 Total: 2.02 kcal Total: -62.61 1.33 -61.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380084824.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.759 kcal (2) G-P(sol) polarization free energy of solvation -62.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds