Wall clock time and date at job start Mon Mar 30 2020 07:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33642 * 122.74349 * 2 1 4 4 S 1.76202 * 107.92029 * 179.97438 * 3 2 1 5 5 C 1.70979 * 90.28334 * 0.02562 * 4 3 2 6 6 C 1.50700 * 124.91676 * 179.97438 * 5 4 3 7 7 H 1.08995 * 109.47293 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.47053 * 300.02650 * 6 5 4 9 9 C 1.53003 * 109.46991 * 60.02364 * 6 5 4 10 10 N 1.46895 * 109.47339 * 175.00147 * 9 6 5 11 11 C 1.46902 * 111.00561 * 179.97438 * 10 9 6 12 12 H 1.09002 * 109.46719 * 34.99912 * 11 10 9 13 13 C 1.52997 * 109.47094 * 275.00137 * 11 10 9 14 14 C 1.50697 * 109.47181 * 154.99698 * 11 10 9 15 15 H 1.07999 * 120.00055 * 0.02562 * 14 11 10 16 16 C 1.37878 * 119.99687 * 180.02562 * 14 11 10 17 17 N 1.31511 * 120.00458 * 359.97438 * 16 14 11 18 18 Si 1.86805 * 119.99926 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47262 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46882 * 119.99668 * 18 16 14 21 21 H 1.48493 * 109.47394 * 239.99732 * 18 16 14 22 22 N 1.29023 * 110.16898 * 0.24003 * 5 4 3 23 23 H 1.09004 * 109.46757 * 89.98008 * 1 2 3 24 24 H 1.09007 * 109.47015 * 209.97162 * 1 2 3 25 25 H 1.08997 * 109.47583 * 329.97639 * 1 2 3 26 26 H 1.07992 * 126.04284 * 0.03505 * 3 2 1 27 27 H 1.08994 * 109.46713 * 300.00021 * 8 6 5 28 28 H 1.08999 * 109.46793 * 60.00117 * 8 6 5 29 29 H 1.08997 * 109.46687 * 179.97438 * 8 6 5 30 30 H 1.09004 * 109.47337 * 55.00124 * 9 6 5 31 31 H 1.09001 * 109.47413 * 295.00060 * 9 6 5 32 32 H 1.00902 * 110.99823 * 303.95513 * 10 9 6 33 33 H 1.09002 * 109.47153 * 299.99508 * 13 11 10 34 34 H 1.09001 * 109.46832 * 179.97438 * 13 11 10 35 35 H 1.09004 * 109.47261 * 59.99681 * 13 11 10 36 36 H 0.96999 * 120.00480 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2298 1.1241 0.0000 4 16 3.9332 0.6733 0.0007 5 6 3.5040 -0.9818 0.0002 6 6 4.4835 -2.1270 -0.0001 7 1 3.9388 -3.0710 -0.0008 8 6 5.3637 -2.0449 -1.2489 9 6 5.3627 -2.0464 1.2496 10 7 6.2356 -3.2262 1.3112 11 6 7.0965 -3.1828 2.5006 12 1 6.5516 -2.7264 3.3270 13 6 8.3467 -2.3553 2.1953 14 6 7.5016 -4.5841 2.8790 15 1 7.1546 -5.4231 2.2941 16 6 8.3153 -4.7951 3.9719 17 7 8.7383 -3.7735 4.6838 18 14 8.8181 -6.5321 4.4405 19 1 8.2154 -7.4966 3.4857 20 1 10.2978 -6.6488 4.3933 21 1 8.3416 -6.8317 5.8146 22 7 2.2200 -1.1083 -0.0055 23 1 -0.3633 0.0004 -1.0277 24 1 -0.3633 -0.8903 0.5134 25 1 -0.3634 0.8897 0.5142 26 1 1.8391 2.1308 0.0005 27 1 4.7373 -2.1023 -2.1391 28 1 5.9084 -1.1008 -1.2481 29 1 6.0724 -2.8730 -1.2489 30 1 4.7306 -2.0153 2.1371 31 1 5.9734 -1.1445 1.2067 32 1 5.6948 -4.0778 1.2867 33 1 8.8916 -2.8116 1.3689 34 1 8.9853 -2.3227 3.0781 35 1 8.0536 -1.3417 1.9217 36 1 9.3105 -3.9219 5.4529 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380084829.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:29 Heat of formation + Delta-G solvation = 9.480223 kcal Electronic energy + Delta-G solvation = -16373.083662 eV Core-core repulsion = 13789.655655 eV Total energy + Delta-G solvation = -2583.428007 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.91015 -38.38407 -35.99387 -33.89987 -32.09797 -29.98429 -28.52091 -27.41212 -26.69483 -24.98380 -21.93876 -21.70045 -20.58829 -18.71888 -18.28459 -17.03254 -16.46216 -16.18695 -15.89455 -15.43064 -15.22882 -14.69379 -14.25492 -14.01417 -13.78461 -13.50100 -13.34476 -13.14993 -12.86974 -12.83309 -12.57444 -12.51420 -12.28470 -12.19889 -12.06112 -11.94545 -11.68851 -10.88141 -10.64056 -10.57495 -10.37079 -9.62877 -9.10701 -8.12980 -6.27007 -0.27190 0.42261 0.82955 1.42252 1.44169 1.55909 1.78205 2.42021 2.94673 3.16220 3.67118 3.86010 4.00434 4.19802 4.26866 4.34559 4.47346 4.67802 4.72924 4.77304 4.84563 4.86610 4.95822 4.99603 5.09391 5.14657 5.22520 5.36902 5.40835 5.47765 5.67308 5.86516 6.22830 6.43176 6.73559 6.79197 6.98298 7.43467 8.93020 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.037520 B = 0.004240 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.091789 B = 6602.576906 C = 6750.025685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.041 3.959 3 C -0.265 4.265 4 S 0.137 5.863 5 C 0.049 3.951 6 C -0.008 4.008 7 H 0.092 0.908 8 C -0.127 4.127 9 C 0.077 3.923 10 N -0.674 5.674 11 C 0.214 3.786 12 H -0.034 1.034 13 C -0.112 4.112 14 C -0.536 4.536 15 H 0.062 0.938 16 C 0.013 3.987 17 N -0.918 5.918 18 Si 0.963 3.037 19 H -0.265 1.265 20 H -0.280 1.280 21 H -0.282 1.282 22 N -0.503 5.503 23 H 0.086 0.914 24 H 0.067 0.933 25 H 0.096 0.904 26 H 0.207 0.793 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.005 0.995 31 H 0.066 0.934 32 H 0.334 0.666 33 H 0.032 0.968 34 H 0.056 0.944 35 H 0.022 0.978 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.565 9.798 -10.726 19.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.090 4.090 3 C -0.403 4.403 4 S 0.392 5.608 5 C -0.229 4.229 6 C -0.030 4.030 7 H 0.110 0.890 8 C -0.185 4.185 9 C -0.054 4.054 10 N -0.305 5.305 11 C 0.106 3.894 12 H -0.016 1.016 13 C -0.171 4.171 14 C -0.574 4.574 15 H 0.080 0.920 16 C -0.187 4.187 17 N -0.558 5.558 18 Si 0.788 3.212 19 H -0.190 1.190 20 H -0.206 1.206 21 H -0.208 1.208 22 N -0.219 5.219 23 H 0.105 0.895 24 H 0.086 0.914 25 H 0.115 0.885 26 H 0.224 0.776 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.023 0.977 31 H 0.085 0.915 32 H 0.152 0.848 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.041 0.959 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.250 10.146 -10.994 18.718 hybrid contribution -1.085 -0.988 1.391 2.022 sum -12.335 9.159 -9.603 18.118 Atomic orbital electron populations 1.20435 0.85094 1.04021 1.03798 1.20861 0.99764 0.86423 1.01945 1.27219 0.94646 1.05001 1.13476 1.83963 1.07881 1.01801 1.67187 1.27090 0.93859 0.99234 1.02700 1.19755 0.92360 0.93954 0.96943 0.88997 1.21722 0.98917 1.03381 0.94482 1.21910 0.93468 0.95588 0.94431 1.60627 1.23363 1.03605 1.42870 1.18938 0.90348 0.95055 0.85062 1.01645 1.21528 0.99319 0.96027 1.00179 1.21617 1.30887 0.92923 1.12006 0.92002 1.25734 0.95857 1.00970 0.96090 1.70032 1.35503 1.31663 1.18585 0.85432 0.77926 0.79915 0.77884 1.18951 1.20553 1.20822 1.66181 1.05051 1.33267 1.17369 0.89546 0.91446 0.88495 0.77640 0.91827 0.92327 0.90369 0.97666 0.91517 0.84821 0.94909 0.92566 0.95919 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.23 10.31 71.24 0.73 -0.49 16 2 C 0.04 1.00 6.74 41.52 0.28 1.28 16 3 C -0.26 -5.47 11.13 66.78 0.74 -4.73 16 4 S 0.14 3.30 22.67 -56.49 -1.28 2.02 16 5 C 0.05 1.44 6.03 88.52 0.53 1.97 16 6 C -0.01 -0.24 2.96 -11.54 -0.03 -0.27 16 7 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 8 C -0.13 -3.36 8.98 71.98 0.65 -2.71 16 9 C 0.08 2.80 4.73 86.31 0.41 3.21 16 10 N -0.67 -28.19 5.75 -495.46 -2.85 -31.04 16 11 C 0.21 10.98 2.60 44.17 0.11 11.09 16 12 H -0.03 -1.95 7.80 -2.39 -0.02 -1.97 16 13 C -0.11 -5.58 9.19 71.98 0.66 -4.92 16 14 C -0.54 -29.42 8.59 25.60 0.22 -29.20 16 15 H 0.06 3.31 7.62 -2.91 -0.02 3.29 16 16 C 0.01 0.70 5.30 84.66 0.45 1.15 16 17 N -0.92 -53.09 11.32 21.45 0.24 -52.85 16 18 Si 0.96 43.49 29.54 68.60 2.03 45.51 16 19 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 22 N -0.50 -15.16 10.53 -179.40 -1.89 -17.05 16 23 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 25 H 0.10 1.10 8.12 -2.39 -0.02 1.08 16 26 H 0.21 2.70 8.06 -2.91 -0.02 2.68 16 27 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.06 1.48 7.93 -2.39 -0.02 1.46 16 29 H 0.08 2.21 7.75 -2.39 -0.02 2.19 16 30 H 0.01 0.20 8.06 -2.39 -0.02 0.19 16 31 H 0.07 2.43 7.39 -2.39 -0.02 2.41 16 32 H 0.33 13.71 8.23 -89.69 -0.74 12.97 16 33 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.06 3.08 6.07 -2.39 -0.01 3.06 16 35 H 0.02 0.99 7.45 -2.38 -0.02 0.97 16 36 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -62.60 311.20 1.33 -61.27 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.33 Total: 15.74 kcal Atomic # 6 Polarization: -28.37 SS G_CDS: 4.76 Total: -23.61 kcal Atomic # 7 Polarization: -96.44 SS G_CDS: -4.50 Total: -100.94 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -1.28 Total: 2.02 kcal Total: -62.60 1.33 -61.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380084829.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.754 kcal (2) G-P(sol) polarization free energy of solvation -62.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds