Wall clock time and date at job start Mon Mar 30 2020 06:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47228 * 2 1 4 4 C 1.53002 * 109.47456 * 119.99964 * 2 1 3 5 5 N 1.46500 * 109.47297 * 174.99804 * 4 2 1 6 6 C 1.38402 * 119.99901 * 180.02562 * 5 4 2 7 7 N 1.32744 * 119.44067 * 359.72761 * 6 5 4 8 8 C 1.31466 * 121.74353 * 179.75261 * 7 6 5 9 9 C 1.40792 * 120.38663 * 0.52324 * 8 7 6 10 10 C 1.41198 * 120.56424 * 179.76784 * 9 8 7 11 11 H 1.08006 * 119.99961 * 23.63283 * 10 9 8 12 12 C 1.39864 * 120.00340 * 203.62569 * 10 9 8 13 13 N 1.30907 * 119.99625 * 17.65037 * 12 10 9 14 14 Si 1.86795 * 120.00445 * 197.65606 * 12 10 9 15 15 H 1.48504 * 109.47295 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47470 * 120.00096 * 14 12 10 17 17 H 1.48506 * 109.47107 * 239.99832 * 14 12 10 18 18 C 1.41282 * 118.87387 * 359.74573 * 9 8 7 19 19 C 1.36672 * 118.39407 * 359.97438 * 18 9 8 20 20 Cl 1.73598 * 120.25831 * 179.97438 * 19 18 9 21 21 H 1.09001 * 109.47065 * 299.99836 * 1 2 3 22 22 H 1.08999 * 109.47214 * 59.99795 * 1 2 3 23 23 H 1.08997 * 109.46838 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47065 * 240.00164 * 2 1 3 25 25 H 1.09007 * 109.47096 * 300.00573 * 3 2 1 26 26 H 1.09002 * 109.47487 * 60.00122 * 3 2 1 27 27 H 1.08997 * 109.47783 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.46991 * 294.99890 * 4 2 1 29 29 H 1.08996 * 109.46552 * 55.00045 * 4 2 1 30 30 H 0.97005 * 119.99677 * 0.02562 * 5 4 2 31 31 H 1.07997 * 119.80928 * 180.25185 * 8 7 6 32 32 H 0.97004 * 119.99808 * 179.97438 * 13 12 10 33 33 H 1.07996 * 120.80238 * 180.02562 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1912 -1.4454 2.2175 7 7 3.5203 -1.9351 3.2530 8 6 4.1303 -2.5359 4.2507 9 6 5.5320 -2.6681 4.2526 10 6 6.1913 -3.3084 5.3245 11 1 5.6582 -4.0181 5.9398 12 6 7.5348 -3.0237 5.5894 13 7 8.0847 -1.9435 5.0950 14 14 8.5445 -4.1849 6.6484 15 1 7.6959 -5.3240 7.0817 16 1 9.6965 -4.6960 5.8629 17 1 9.0437 -3.4576 7.8430 18 6 6.2676 -2.1498 3.1634 19 6 5.5842 -1.5396 2.1492 20 17 6.4397 -0.8849 0.7879 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.6766 1.9564 -0.8900 26 1 1.6767 1.9564 0.8900 27 1 3.1300 1.4426 -0.0005 28 1 1.7517 -0.1583 2.1369 29 1 1.6054 -1.7197 1.2951 30 1 3.9824 -0.4621 0.4318 31 1 3.5532 -2.9264 5.0758 32 1 9.0164 -1.7459 5.2790 33 1 7.3438 -2.2345 3.1326 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380191118.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:05 Heat of formation + Delta-G solvation = -11.490359 kcal Electronic energy + Delta-G solvation = -16254.090464 eV Core-core repulsion = 13531.876303 eV Total energy + Delta-G solvation = -2722.214161 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.56828 -38.06154 -37.28459 -35.98910 -34.27630 -32.37098 -30.92974 -28.02029 -27.56963 -25.91887 -23.64303 -22.78116 -21.06997 -19.30594 -18.28355 -17.60095 -16.79519 -16.19425 -15.98701 -15.50295 -15.08965 -14.79943 -14.38468 -13.99272 -13.79364 -13.59585 -13.31597 -13.15474 -12.92521 -12.84556 -12.66887 -12.44616 -12.03117 -11.92984 -11.80389 -11.64199 -11.50897 -11.23371 -10.51309 -10.12724 -9.99755 -8.72340 -8.44643 -6.18874 0.64849 0.98757 1.40853 1.43364 1.53301 1.58267 2.23647 2.66361 2.74091 3.64150 3.87940 4.03342 4.10827 4.27657 4.50532 4.69095 4.75846 4.79665 4.84612 4.95498 5.00053 5.09471 5.10690 5.22805 5.24591 5.30293 5.44059 5.47897 5.79532 5.80176 6.33731 6.60009 6.76156 6.83846 6.89769 7.72827 8.34124 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.035457 B = 0.005384 C = 0.004818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.501410 B = 5199.708702 C = 5810.602271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.102 4.102 3 C -0.144 4.144 4 C 0.152 3.848 5 N -0.732 5.732 6 C 0.291 3.709 7 N -0.512 5.512 8 C 0.007 3.993 9 C 0.010 3.990 10 C -0.482 4.482 11 H 0.086 0.914 12 C 0.035 3.965 13 N -0.831 5.831 14 Si 0.983 3.017 15 H -0.255 1.255 16 H -0.268 1.268 17 H -0.268 1.268 18 C -0.104 4.104 19 C -0.116 4.116 20 Cl -0.086 7.086 21 H 0.056 0.944 22 H 0.074 0.926 23 H 0.057 0.943 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.051 0.949 27 H 0.043 0.957 28 H 0.038 0.962 29 H 0.041 0.959 30 H 0.403 0.597 31 H 0.148 0.852 32 H 0.288 0.712 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.417 2.837 -7.562 10.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.121 4.121 3 C -0.201 4.201 4 C 0.028 3.972 5 N -0.373 5.373 6 C 0.056 3.944 7 N -0.228 5.228 8 C -0.151 4.151 9 C 0.004 3.996 10 C -0.512 4.512 11 H 0.105 0.895 12 C -0.180 4.180 13 N -0.457 5.457 14 Si 0.804 3.196 15 H -0.179 1.179 16 H -0.193 1.193 17 H -0.193 1.193 18 C -0.131 4.131 19 C -0.149 4.149 20 Cl -0.058 7.058 21 H 0.075 0.925 22 H 0.093 0.907 23 H 0.076 0.924 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.240 0.760 31 H 0.165 0.835 32 H 0.099 0.901 33 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.227 3.104 -7.597 10.935 hybrid contribution 1.901 -0.242 0.254 1.933 sum -5.325 2.862 -7.343 9.512 Atomic orbital electron populations 1.21721 0.92862 1.02324 1.02689 1.21327 0.97470 0.96507 0.96813 1.21821 1.00522 0.95462 1.02335 1.21099 0.79624 0.98868 0.97657 1.43924 1.06126 1.65539 1.21706 1.17759 0.85997 0.99386 0.91290 1.66837 1.39571 1.14312 1.02094 1.22597 0.92201 1.03252 0.97036 1.18598 0.92667 0.94657 0.93674 1.19619 0.96355 1.22691 1.12572 0.89547 1.26723 0.98846 0.95644 0.96766 1.69866 1.14785 1.22275 1.38821 0.85133 0.77915 0.78737 0.77812 1.17854 1.19255 1.19343 1.21250 1.00469 0.99831 0.91566 1.21007 0.91212 1.09441 0.93192 1.98231 1.77470 1.85467 1.44625 0.92527 0.90704 0.92402 0.90476 0.90769 0.93004 0.93773 0.94352 0.94072 0.75991 0.83498 0.90090 0.85699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.19 71.98 0.66 -1.84 16 2 C -0.10 -2.31 2.96 -10.79 -0.03 -2.34 16 3 C -0.14 -3.08 9.07 71.98 0.65 -2.42 16 4 C 0.15 4.76 5.05 86.38 0.44 5.19 16 5 N -0.73 -26.91 5.37 -344.76 -1.85 -28.76 16 6 C 0.29 13.21 7.48 133.32 1.00 14.21 16 7 N -0.51 -24.46 9.52 -191.09 -1.82 -26.28 16 8 C 0.01 0.36 10.97 85.37 0.94 1.30 16 9 C 0.01 0.51 5.59 -21.18 -0.12 0.40 16 10 C -0.48 -24.87 9.06 23.39 0.21 -24.65 16 11 H 0.09 4.23 7.90 -2.91 -0.02 4.20 16 12 C 0.03 1.68 5.17 85.22 0.44 2.12 16 13 N -0.83 -42.46 10.92 21.82 0.24 -42.22 16 14 Si 0.98 37.10 29.59 68.60 2.03 39.13 16 15 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 16 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 17 H -0.27 -9.79 7.11 99.48 0.71 -9.09 16 18 C -0.10 -5.39 8.53 22.65 0.19 -5.20 16 19 C -0.12 -5.43 6.32 22.28 0.14 -5.29 16 20 Cl -0.09 -3.34 27.56 -2.72 -0.07 -3.42 16 21 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 22 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 24 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 26 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.04 1.04 7.18 -2.39 -0.02 1.03 16 28 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.40 13.49 6.26 -92.70 -0.58 12.91 16 31 H 0.15 6.63 8.06 -2.91 -0.02 6.61 16 32 H 0.29 13.37 8.30 -92.71 -0.77 12.60 16 33 H 0.13 6.76 6.19 -2.91 -0.02 6.74 16 Total: -1.00 -56.67 292.70 3.58 -53.09 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: 0.53 Total: 26.98 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: 4.52 Total: -18.51 kcal Atomic # 7 Polarization: -93.83 SS G_CDS: -3.43 Total: -97.26 kcal Atomic # 14 Polarization: 37.10 SS G_CDS: 2.03 Total: 39.13 kcal Atomic # 17 Polarization: -3.34 SS G_CDS: -0.07 Total: -3.42 kcal Total: -56.67 3.58 -53.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380191118.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.603 kcal (2) G-P(sol) polarization free energy of solvation -56.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds