Wall clock time and date at job start Mon Mar 30 2020 07:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29023 * 124.91458 * 2 1 4 4 C 1.31778 * 117.12436 * 180.02562 * 3 2 1 5 5 C 1.50693 * 122.75176 * 179.97438 * 4 3 2 6 6 N 1.46908 * 109.47347 * 90.02351 * 5 4 3 7 7 C 1.46894 * 110.99955 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47779 * 324.99869 * 7 6 5 9 9 C 1.52998 * 109.47018 * 85.00186 * 7 6 5 10 10 C 1.53002 * 109.47229 * 204.99899 * 7 6 5 11 11 C 1.50706 * 109.47153 * 64.99752 * 10 7 6 12 12 H 1.07998 * 119.99503 * 0.02562 * 11 10 7 13 13 C 1.37871 * 120.00434 * 180.02562 * 11 10 7 14 14 N 1.31516 * 119.99826 * 359.72891 * 13 11 10 15 15 Si 1.86800 * 120.00406 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46758 * 269.72576 * 15 13 11 17 17 H 1.48499 * 109.47026 * 29.72423 * 15 13 11 18 18 H 1.48496 * 109.47474 * 149.72459 * 15 13 11 19 19 C 1.33640 * 114.49944 * 0.23152 * 4 3 2 20 20 C 1.50700 * 126.04108 * 179.77007 * 19 4 3 21 21 S 1.70971 * 124.91478 * 180.02562 * 2 1 3 22 22 H 1.08998 * 109.47133 * 89.99563 * 1 2 3 23 23 H 1.08997 * 109.47293 * 209.99971 * 1 2 3 24 24 H 1.09009 * 109.47190 * 329.99750 * 1 2 3 25 25 H 1.09002 * 109.47128 * 330.02461 * 5 4 3 26 26 H 1.09003 * 109.47028 * 210.02057 * 5 4 3 27 27 H 1.00893 * 111.00020 * 303.95580 * 6 5 4 28 28 H 1.09001 * 109.46923 * 299.99707 * 9 7 6 29 29 H 1.08995 * 109.47190 * 60.00037 * 9 7 6 30 30 H 1.09007 * 109.46878 * 179.97438 * 9 7 6 31 31 H 1.09004 * 109.47178 * 305.00542 * 10 7 6 32 32 H 1.08993 * 109.47411 * 185.00225 * 10 7 6 33 33 H 0.97000 * 120.00236 * 0.27947 * 14 13 11 34 34 H 1.08995 * 109.47433 * 89.99820 * 20 19 4 35 35 H 1.08999 * 109.47173 * 210.00853 * 20 19 4 36 36 H 1.09003 * 109.46797 * 329.99830 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8794 -0.0005 5 6 4.5306 2.0245 -0.0012 6 7 4.8500 2.3966 1.3837 7 6 5.8050 3.5121 1.4222 8 1 6.5031 3.4218 0.5900 9 6 5.0470 4.8364 1.3106 10 6 6.5778 3.4765 2.7422 11 6 7.4204 2.2282 2.7975 12 1 7.4063 1.5304 1.9734 13 6 8.2091 1.9771 3.9001 14 7 8.2303 2.8296 4.9013 15 14 9.2540 0.4302 3.9684 16 1 8.4732 -0.6673 4.5938 17 1 9.6460 0.0365 2.5913 18 1 10.4735 0.6917 4.7745 19 6 3.9354 -0.4006 -0.0059 20 6 5.3574 -0.8994 -0.0127 21 16 2.4856 -1.4020 -0.0006 22 1 -0.3633 0.0001 -1.0276 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5139 25 1 4.0901 2.8792 -0.5146 26 1 5.4428 1.7222 -0.5157 27 1 4.0126 2.6191 1.9006 28 1 4.4964 4.8618 0.3702 29 1 4.3490 4.9268 2.1428 30 1 5.7556 5.6642 1.3396 31 1 5.8746 3.4774 3.5751 32 1 7.2221 4.3531 2.8098 33 1 7.6879 3.6331 4.8659 34 1 5.7040 -1.0229 1.0133 35 1 5.4038 -1.8578 -0.5298 36 1 5.9929 -0.1783 -0.5266 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380234189.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:43 Heat of formation + Delta-G solvation = 22.252286 kcal Electronic energy + Delta-G solvation = -16644.077303 eV Core-core repulsion = 14061.203134 eV Total energy + Delta-G solvation = -2582.874169 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.88285 -36.69299 -33.75178 -32.69899 -30.47568 -30.10260 -26.87679 -26.23286 -24.38322 -22.84223 -22.21607 -19.98196 -18.71525 -17.73915 -16.66707 -15.40790 -15.12619 -14.43825 -14.00769 -13.86297 -13.60178 -13.31264 -13.27764 -12.95896 -12.80353 -12.42974 -12.22197 -12.16071 -11.86946 -11.44783 -11.23631 -11.02388 -10.90349 -10.67840 -10.24947 -10.03095 -9.60723 -9.51853 -9.11027 -8.49503 -8.40079 -8.17268 -7.58237 -6.17542 -3.82145 0.82082 1.40831 1.80496 2.88030 3.51138 3.55125 3.70264 4.11986 4.67259 4.88279 5.05374 5.14833 5.22845 5.28474 5.31701 5.57861 5.61625 5.68120 5.70471 5.74024 5.85399 5.95440 5.97775 6.13713 6.18837 6.39063 6.42178 6.56740 6.90696 7.35431 7.45742 7.86237 7.88439 8.06875 8.44969 8.69527 9.08178 9.86443 11.23016 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.021448 B = 0.006000 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.182169 B = 4665.545594 C = 5527.690903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.034 3.966 3 N -0.464 5.464 4 C 0.063 3.937 5 C 0.136 3.864 6 N -0.655 5.655 7 C 0.097 3.903 8 H 0.066 0.934 9 C -0.181 4.181 10 C 0.020 3.980 11 C -0.567 4.567 12 H 0.052 0.948 13 C 0.007 3.993 14 N -0.925 5.925 15 Si 1.069 2.931 16 H -0.291 1.291 17 H -0.290 1.290 18 H -0.288 1.288 19 C -0.187 4.187 20 C -0.074 4.074 21 S 0.093 5.907 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.086 0.914 25 H 0.035 0.965 26 H 0.084 0.916 27 H 0.334 0.666 28 H 0.040 0.960 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.007 0.993 32 H 0.008 0.992 33 H 0.266 0.734 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.895 -6.833 -12.105 18.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.244 4.244 3 N -0.179 5.179 4 C -0.068 4.068 5 C 0.004 3.996 6 N -0.286 5.286 7 C -0.012 4.012 8 H 0.084 0.916 9 C -0.241 4.241 10 C -0.017 4.017 11 C -0.605 4.605 12 H 0.070 0.930 13 C -0.195 4.195 14 N -0.563 5.563 15 Si 0.899 3.101 16 H -0.218 1.218 17 H -0.217 1.217 18 H -0.214 1.214 19 C -0.308 4.308 20 C -0.134 4.134 21 S 0.348 5.652 22 H 0.100 0.900 23 H 0.096 0.904 24 H 0.105 0.895 25 H 0.053 0.947 26 H 0.102 0.898 27 H 0.152 0.848 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.025 0.975 32 H 0.026 0.974 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.801 -8.709 -11.107 18.398 hybrid contribution -1.237 2.289 -1.146 2.843 sum -13.038 -6.421 -12.253 19.009 Atomic orbital electron populations 1.20372 0.85516 1.03963 1.03434 1.26758 1.01351 0.90947 1.05336 1.66068 1.04769 1.31704 1.15394 1.20087 0.89534 0.94252 1.02884 1.20410 0.94559 0.92097 0.92511 1.60555 1.16496 1.41703 1.09810 1.21636 0.92780 0.85414 1.01357 0.91574 1.22576 1.00788 1.00430 1.00260 1.19234 0.94237 0.97306 0.90945 1.21938 1.26165 1.06751 1.05674 0.92974 1.25745 0.97943 1.02948 0.92883 1.70748 1.40921 1.12016 1.32624 0.83544 0.76244 0.75126 0.75220 1.21769 1.21652 1.21397 1.25698 1.00069 0.95250 1.09820 1.20287 0.88327 1.00665 1.04075 1.83760 0.98436 1.12999 1.70029 0.90010 0.90359 0.89514 0.94677 0.89806 0.84843 0.94079 0.93079 0.92501 0.97513 0.97410 0.92389 0.89329 0.91820 0.89931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.46 36.01 0.38 -0.27 16 2 C 0.03 0.46 7.39 -13.46 -0.10 0.36 16 3 N -0.46 -7.46 10.53 -8.06 -0.08 -7.55 16 4 C 0.06 1.04 6.25 -84.23 -0.53 0.51 16 5 C 0.14 2.31 5.66 -4.98 -0.03 2.28 16 6 N -0.66 -12.93 5.95 -107.99 -0.64 -13.57 16 7 C 0.10 2.01 2.53 -67.72 -0.17 1.84 16 8 H 0.07 1.38 7.80 -51.93 -0.40 0.97 16 9 C -0.18 -3.18 9.16 37.16 0.34 -2.84 16 10 C 0.02 0.52 3.97 -27.88 -0.11 0.41 16 11 C -0.57 -16.11 8.84 -34.44 -0.30 -16.42 16 12 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 13 C 0.01 0.19 5.46 -17.82 -0.10 0.10 16 14 N -0.93 -28.99 13.65 55.43 0.76 -28.23 16 15 Si 1.07 26.01 29.90 -169.99 -5.08 20.93 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 C -0.19 -2.83 6.59 -35.92 -0.24 -3.07 16 20 C -0.07 -1.04 10.10 36.01 0.36 -0.67 16 21 S 0.09 1.17 23.18 -107.50 -2.49 -1.32 16 22 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.09 0.78 8.14 -51.92 -0.42 0.36 16 25 H 0.04 0.58 7.44 -51.93 -0.39 0.19 16 26 H 0.08 1.38 6.62 -51.93 -0.34 1.04 16 27 H 0.33 6.60 8.46 -39.30 -0.33 6.27 16 28 H 0.04 0.64 7.45 -51.93 -0.39 0.26 16 29 H 0.05 0.89 8.13 -51.93 -0.42 0.46 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.01 0.18 8.01 -51.93 -0.42 -0.23 16 32 H 0.01 0.21 8.00 -51.93 -0.42 -0.21 16 33 H 0.27 8.31 7.22 -40.82 -0.29 8.02 16 34 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 1.14 6.76 -51.93 -0.35 0.79 16 LS Contribution 313.44 15.07 4.72 4.72 Total: -1.00 -32.21 313.44 -8.81 -41.02 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -5.49 Total: 1.77 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -0.49 Total: -17.77 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 0.03 Total: -49.35 kcal Atomic # 14 Polarization: 26.01 SS G_CDS: -5.08 Total: 20.93 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.49 Total: -1.32 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.21 -8.81 -41.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380234189.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.269 kcal (2) G-P(sol) polarization free energy of solvation -32.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds