Wall clock time and date at job start Mon Mar 30 2020 07:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29023 * 124.91458 * 2 1 4 4 C 1.31778 * 117.12436 * 180.02562 * 3 2 1 5 5 C 1.50693 * 122.75176 * 179.97438 * 4 3 2 6 6 N 1.46908 * 109.47347 * 90.02351 * 5 4 3 7 7 C 1.46894 * 110.99955 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47779 * 324.99869 * 7 6 5 9 9 C 1.52998 * 109.47018 * 85.00186 * 7 6 5 10 10 C 1.53002 * 109.47229 * 204.99899 * 7 6 5 11 11 C 1.50706 * 109.47153 * 64.99752 * 10 7 6 12 12 H 1.07998 * 119.99503 * 0.02562 * 11 10 7 13 13 C 1.37871 * 120.00434 * 180.02562 * 11 10 7 14 14 N 1.31516 * 119.99826 * 359.72891 * 13 11 10 15 15 Si 1.86800 * 120.00406 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46758 * 269.72576 * 15 13 11 17 17 H 1.48499 * 109.47026 * 29.72423 * 15 13 11 18 18 H 1.48496 * 109.47474 * 149.72459 * 15 13 11 19 19 C 1.33640 * 114.49944 * 0.23152 * 4 3 2 20 20 C 1.50700 * 126.04108 * 179.77007 * 19 4 3 21 21 S 1.70971 * 124.91478 * 180.02562 * 2 1 3 22 22 H 1.08998 * 109.47133 * 89.99563 * 1 2 3 23 23 H 1.08997 * 109.47293 * 209.99971 * 1 2 3 24 24 H 1.09009 * 109.47190 * 329.99750 * 1 2 3 25 25 H 1.09002 * 109.47128 * 330.02461 * 5 4 3 26 26 H 1.09003 * 109.47028 * 210.02057 * 5 4 3 27 27 H 1.00893 * 111.00020 * 303.95580 * 6 5 4 28 28 H 1.09001 * 109.46923 * 299.99707 * 9 7 6 29 29 H 1.08995 * 109.47190 * 60.00037 * 9 7 6 30 30 H 1.09007 * 109.46878 * 179.97438 * 9 7 6 31 31 H 1.09004 * 109.47178 * 305.00542 * 10 7 6 32 32 H 1.08993 * 109.47411 * 185.00225 * 10 7 6 33 33 H 0.97000 * 120.00236 * 0.27947 * 14 13 11 34 34 H 1.08995 * 109.47433 * 89.99820 * 20 19 4 35 35 H 1.08999 * 109.47173 * 210.00853 * 20 19 4 36 36 H 1.09003 * 109.46797 * 329.99830 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8794 -0.0005 5 6 4.5306 2.0245 -0.0012 6 7 4.8500 2.3966 1.3837 7 6 5.8050 3.5121 1.4222 8 1 6.5031 3.4218 0.5900 9 6 5.0470 4.8364 1.3106 10 6 6.5778 3.4765 2.7422 11 6 7.4204 2.2282 2.7975 12 1 7.4063 1.5304 1.9734 13 6 8.2091 1.9771 3.9001 14 7 8.2303 2.8296 4.9013 15 14 9.2540 0.4302 3.9684 16 1 8.4732 -0.6673 4.5938 17 1 9.6460 0.0365 2.5913 18 1 10.4735 0.6917 4.7745 19 6 3.9354 -0.4006 -0.0059 20 6 5.3574 -0.8994 -0.0127 21 16 2.4856 -1.4020 -0.0006 22 1 -0.3633 0.0001 -1.0276 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5139 25 1 4.0901 2.8792 -0.5146 26 1 5.4428 1.7222 -0.5157 27 1 4.0126 2.6191 1.9006 28 1 4.4964 4.8618 0.3702 29 1 4.3490 4.9268 2.1428 30 1 5.7556 5.6642 1.3396 31 1 5.8746 3.4774 3.5751 32 1 7.2221 4.3531 2.8098 33 1 7.6879 3.6331 4.8659 34 1 5.7040 -1.0229 1.0133 35 1 5.4038 -1.8578 -0.5298 36 1 5.9929 -0.1783 -0.5266 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380234189.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:43 Heat of formation + Delta-G solvation = 0.943267 kcal Electronic energy + Delta-G solvation = -16645.001332 eV Core-core repulsion = 14061.203134 eV Total energy + Delta-G solvation = -2583.798198 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.00903 -38.30546 -35.32564 -34.37876 -31.94885 -31.10006 -28.80737 -27.48595 -25.61416 -24.87591 -23.35284 -21.70573 -19.83806 -18.94399 -18.70923 -16.77574 -16.41945 -15.69552 -15.64838 -15.41179 -15.19587 -14.76369 -14.30546 -14.19153 -14.13284 -13.63699 -13.47743 -13.26876 -13.11933 -13.00799 -12.94849 -12.66100 -12.52237 -12.23646 -11.92506 -11.90550 -11.43876 -10.60956 -10.58177 -10.44526 -10.14747 -9.57813 -9.11923 -8.53300 -6.18347 -0.24350 0.38716 0.73876 1.54310 1.64301 1.72512 1.80904 2.64377 3.10495 3.28516 3.51328 3.93794 4.03516 4.10030 4.14155 4.32988 4.39176 4.48690 4.50994 4.59965 4.67228 4.73146 4.82037 4.95245 5.02047 5.06974 5.12150 5.14609 5.23693 5.29962 5.45453 6.13976 6.26781 6.37687 6.48715 6.76173 6.80896 7.59321 8.87696 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.021448 B = 0.006000 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.182169 B = 4665.545594 C = 5527.690903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.031 3.969 3 N -0.497 5.497 4 C 0.044 3.956 5 C 0.143 3.857 6 N -0.669 5.669 7 C 0.107 3.893 8 H 0.065 0.935 9 C -0.170 4.170 10 C 0.022 3.978 11 C -0.570 4.570 12 H 0.053 0.947 13 C -0.049 4.049 14 N -0.953 5.953 15 Si 1.116 2.884 16 H -0.279 1.279 17 H -0.266 1.266 18 H -0.288 1.288 19 C -0.212 4.212 20 C -0.072 4.072 21 S 0.145 5.855 22 H 0.102 0.898 23 H 0.101 0.899 24 H 0.086 0.914 25 H 0.040 0.960 26 H 0.085 0.915 27 H 0.331 0.669 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.060 0.940 31 H -0.018 1.018 32 H -0.011 1.011 33 H 0.251 0.749 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.013 -8.556 -13.533 21.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.247 4.247 3 N -0.213 5.213 4 C -0.087 4.087 5 C 0.012 3.988 6 N -0.299 5.299 7 C -0.003 4.003 8 H 0.083 0.917 9 C -0.229 4.229 10 C -0.015 4.015 11 C -0.609 4.609 12 H 0.071 0.929 13 C -0.244 4.244 14 N -0.592 5.592 15 Si 0.938 3.062 16 H -0.205 1.205 17 H -0.190 1.190 18 H -0.214 1.214 19 C -0.334 4.334 20 C -0.131 4.131 21 S 0.400 5.600 22 H 0.120 0.880 23 H 0.120 0.880 24 H 0.104 0.896 25 H 0.058 0.942 26 H 0.103 0.897 27 H 0.149 0.851 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.000 1.000 32 H 0.008 0.992 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.941 -10.432 -12.563 20.836 hybrid contribution -0.991 2.792 -0.727 3.050 sum -13.933 -7.640 -13.290 20.715 Atomic orbital electron populations 1.20589 0.82650 1.05078 1.05069 1.27537 1.03124 0.90825 1.03207 1.66085 1.04729 1.33184 1.17306 1.20032 0.89937 0.94455 1.04273 1.20316 0.95079 0.92765 0.90630 1.60415 1.16299 1.41305 1.11890 1.21351 0.93123 0.87709 0.98114 0.91671 1.22425 1.00592 0.98518 1.01393 1.19160 0.93724 0.95600 0.93010 1.22282 1.25868 1.07353 1.05362 0.92907 1.27265 0.99256 1.05311 0.92608 1.70892 1.41984 1.12439 1.33926 0.82952 0.74752 0.71852 0.76607 1.20526 1.19042 1.21414 1.25942 1.01659 0.95814 1.09937 1.20266 0.87838 1.01935 1.03075 1.83515 0.96212 1.11385 1.68847 0.87977 0.88049 0.89564 0.94203 0.89690 0.85136 0.91790 0.93249 0.92072 1.00018 0.99238 0.93946 0.91294 0.89204 0.90377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.11 10.46 71.24 0.75 -0.36 16 2 C 0.03 0.75 7.39 88.52 0.65 1.41 16 3 N -0.50 -15.38 10.53 -179.41 -1.89 -17.27 16 4 C 0.04 1.41 6.25 41.52 0.26 1.67 16 5 C 0.14 4.80 5.66 85.55 0.48 5.28 16 6 N -0.67 -26.44 5.95 -495.58 -2.95 -29.38 16 7 C 0.11 4.42 2.53 44.92 0.11 4.54 16 8 H 0.07 2.70 7.80 -2.39 -0.02 2.69 16 9 C -0.17 -5.84 9.16 71.98 0.66 -5.18 16 10 C 0.02 1.19 3.97 29.85 0.12 1.31 16 11 C -0.57 -32.84 8.84 25.60 0.23 -32.61 16 12 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 13 C -0.05 -2.93 5.46 84.65 0.46 -2.47 16 14 N -0.95 -61.02 13.65 21.45 0.29 -60.73 16 15 Si 1.12 52.05 29.90 68.60 2.05 54.10 16 16 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 17 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 18 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 19 C -0.21 -6.15 6.59 24.64 0.16 -5.99 16 20 C -0.07 -1.93 10.10 71.24 0.72 -1.21 16 21 S 0.15 3.28 23.18 -56.49 -1.31 1.98 16 22 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 25 H 0.04 1.28 7.44 -2.39 -0.02 1.26 16 26 H 0.08 2.77 6.62 -2.39 -0.02 2.75 16 27 H 0.33 13.22 8.46 -89.70 -0.76 12.46 16 28 H 0.06 1.91 7.45 -2.39 -0.02 1.89 16 29 H 0.05 1.70 8.13 -2.39 -0.02 1.68 16 30 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 31 H -0.02 -1.06 8.01 -2.39 -0.02 -1.08 16 32 H -0.01 -0.59 8.00 -2.39 -0.02 -0.61 16 33 H 0.25 16.33 7.22 -92.71 -0.67 15.66 16 34 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.08 2.11 6.76 -2.39 -0.02 2.10 16 Total: -1.00 -69.91 313.44 1.21 -68.70 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 0.41 Total: 16.23 kcal Atomic # 6 Polarization: -38.23 SS G_CDS: 4.61 Total: -33.62 kcal Atomic # 7 Polarization: -102.83 SS G_CDS: -4.55 Total: -107.38 kcal Atomic # 14 Polarization: 52.05 SS G_CDS: 2.05 Total: 54.10 kcal Atomic # 16 Polarization: 3.28 SS G_CDS: -1.31 Total: 1.98 kcal Total: -69.91 1.21 -68.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380234189.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.641 kcal (2) G-P(sol) polarization free energy of solvation -69.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds