Wall clock time and date at job start Mon Mar 30 2020 07:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29028 * 124.91695 * 2 1 4 4 C 1.31783 * 117.12625 * 179.97438 * 3 2 1 5 5 C 1.50701 * 122.75139 * 179.97438 * 4 3 2 6 6 N 1.46903 * 109.47054 * 275.03367 * 5 4 3 7 7 C 1.46898 * 110.99673 * 180.02562 * 6 5 4 8 8 C 1.53006 * 109.47006 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47127 * 179.97438 * 8 7 6 10 10 C 1.52996 * 109.47131 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47188 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00218 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00046 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99944 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00270 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46778 * 60.00425 * 15 13 11 17 17 H 1.48496 * 109.47592 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47134 * 300.00732 * 15 13 11 19 19 C 1.33641 * 114.49594 * 0.24299 * 4 3 2 20 20 S 1.70971 * 124.91470 * 180.02562 * 2 1 3 21 21 H 1.09002 * 109.46878 * 89.99665 * 1 2 3 22 22 H 1.08991 * 109.47426 * 209.99559 * 1 2 3 23 23 H 1.09008 * 109.47043 * 330.00023 * 1 2 3 24 24 H 1.08993 * 109.46849 * 155.03331 * 5 4 3 25 25 H 1.08995 * 109.46627 * 35.02666 * 5 4 3 26 26 H 1.00906 * 110.99345 * 303.95214 * 6 5 4 27 27 H 1.09001 * 109.47062 * 59.99745 * 7 6 5 28 28 H 1.08993 * 109.47084 * 299.99192 * 7 6 5 29 29 H 1.09001 * 109.46801 * 300.00064 * 8 7 6 30 30 H 1.09001 * 109.46998 * 59.99660 * 8 7 6 31 31 H 1.08996 * 109.46952 * 300.00302 * 9 8 7 32 32 H 1.09001 * 109.46832 * 60.00321 * 9 8 7 33 33 H 1.09000 * 109.47380 * 300.00763 * 10 9 8 34 34 H 1.09001 * 109.46997 * 60.00426 * 10 9 8 35 35 H 0.97007 * 119.99867 * 179.97438 * 14 13 11 36 36 H 1.07999 * 126.03336 * 179.76548 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5308 2.0246 0.0000 6 7 4.7572 2.4747 -1.3799 7 6 5.7095 3.5924 -1.4194 8 6 5.9198 4.0323 -2.8697 9 6 6.9112 5.1968 -2.9109 10 6 7.1220 5.6362 -4.3612 11 6 8.0980 6.7837 -4.4016 12 1 8.5256 7.1615 -3.4847 13 6 8.4459 7.3505 -5.6094 14 7 7.9256 6.8901 -6.7260 15 14 9.6564 8.7724 -5.6597 16 1 10.9531 8.3392 -5.0799 17 1 9.8608 9.1990 -7.0673 18 1 9.1171 9.9097 -4.8716 19 6 3.9354 -0.4006 -0.0042 20 16 2.4856 -1.4020 -0.0006 21 1 -0.3633 0.0001 -1.0277 22 1 -0.3634 -0.8899 0.5137 23 1 -0.3633 0.8901 0.5139 24 1 5.4747 1.6954 0.4343 25 1 4.1272 2.8480 0.5892 26 1 5.0704 1.7124 -1.9621 27 1 6.6616 3.2737 -0.9951 28 1 5.3146 4.4269 -0.8400 29 1 6.3149 3.1976 -3.4488 30 1 4.9678 4.3508 -3.2945 31 1 6.5157 6.0313 -2.3318 32 1 7.8633 4.8786 -2.4861 33 1 7.5176 4.8015 -4.9399 34 1 6.1701 5.9543 -4.7864 35 1 8.1701 7.2892 -7.5757 36 1 4.9545 -0.7581 -0.0082 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385267325.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:40 Heat of formation + Delta-G solvation = 18.783831 kcal Electronic energy + Delta-G solvation = -15396.999731 eV Core-core repulsion = 12813.975158 eV Total energy + Delta-G solvation = -2583.024573 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.12168 -36.67406 -34.29025 -32.77886 -31.75668 -29.12059 -28.14523 -26.09726 -23.97235 -22.51940 -21.39280 -20.06305 -19.81203 -17.97348 -16.20328 -15.72581 -15.58527 -15.40150 -14.57129 -14.38521 -14.26799 -13.96853 -13.38810 -12.99718 -12.77605 -12.49222 -12.36897 -12.23028 -11.70235 -11.43936 -11.27363 -10.95870 -10.52411 -10.50391 -10.39598 -9.82213 -9.62885 -9.59191 -9.24796 -9.05316 -8.92733 -8.38118 -8.29402 -5.94837 -3.97101 0.46450 1.11571 1.47818 2.54560 3.36145 3.40228 3.42857 3.80372 4.34578 4.50626 4.65925 4.91954 5.00193 5.05713 5.13876 5.32039 5.40166 5.41326 5.52069 5.55460 5.69625 5.92578 5.93678 6.18178 6.26669 6.54212 6.86053 6.97535 7.04248 7.25170 7.38378 7.59617 7.74107 7.90539 8.06457 8.49099 9.10301 9.66506 11.16519 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.056483 B = 0.002619 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.606746 B =10689.098233 C =10790.188326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.049 3.951 3 N -0.455 5.455 4 C 0.082 3.918 5 C 0.132 3.868 6 N -0.683 5.683 7 C 0.061 3.939 8 C -0.115 4.115 9 C -0.108 4.108 10 C 0.021 3.979 11 C -0.520 4.520 12 H 0.054 0.946 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.258 4.258 20 S 0.106 5.894 21 H 0.087 0.913 22 H 0.079 0.921 23 H 0.090 0.910 24 H 0.046 0.954 25 H 0.089 0.911 26 H 0.339 0.661 27 H 0.028 0.972 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.044 0.956 33 H 0.014 0.986 34 H 0.016 0.984 35 H 0.260 0.740 36 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.289 -18.242 15.658 26.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.229 4.229 3 N -0.170 5.170 4 C -0.051 4.051 5 C 0.000 4.000 6 N -0.314 5.314 7 C -0.068 4.068 8 C -0.153 4.153 9 C -0.147 4.147 10 C -0.016 4.016 11 C -0.559 4.559 12 H 0.072 0.928 13 C -0.146 4.146 14 N -0.536 5.536 15 Si 0.720 3.280 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.398 4.398 20 S 0.360 5.640 21 H 0.106 0.894 22 H 0.098 0.902 23 H 0.108 0.892 24 H 0.064 0.936 25 H 0.107 0.893 26 H 0.157 0.843 27 H 0.046 0.954 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.032 0.968 34 H 0.034 0.966 35 H 0.070 0.930 36 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -13.310 -18.365 15.465 27.452 hybrid contribution 2.209 0.951 -0.010 2.405 sum -11.101 -17.414 15.456 25.795 Atomic orbital electron populations 1.20452 0.85138 1.04129 1.04068 1.27113 1.01868 0.90752 1.03208 1.66086 1.04520 1.31221 1.15171 1.20209 0.90245 0.93760 1.00875 1.20422 0.93925 0.93833 0.91828 1.60456 1.50717 1.11874 1.08378 1.22100 0.92458 0.93068 0.99152 1.21638 1.00729 0.99156 0.93813 1.21587 0.96544 0.95439 1.01092 1.19087 0.96759 0.95925 0.89828 1.21257 1.25607 1.16474 0.92544 0.92819 1.25037 0.96489 0.97224 0.95800 1.69964 1.43994 1.41942 0.97704 0.86667 0.81671 0.82820 0.76883 1.20294 1.21308 1.20249 1.26852 1.03162 0.95875 1.13923 1.83909 0.98100 1.13140 1.68835 0.89431 0.90198 0.89170 0.93597 0.89252 0.84304 0.95417 0.91003 0.92770 0.91583 0.93379 0.93675 0.96756 0.96594 0.93000 0.80705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.46 36.01 0.38 -0.13 16 2 C 0.05 0.49 7.39 -13.45 -0.10 0.39 16 3 N -0.46 -5.84 10.53 -8.06 -0.08 -5.93 16 4 C 0.08 0.97 6.25 -84.22 -0.53 0.44 16 5 C 0.13 1.54 6.12 -4.97 -0.03 1.51 16 6 N -0.68 -9.27 6.49 -115.06 -0.75 -10.02 16 7 C 0.06 0.88 5.69 -3.82 -0.02 0.86 16 8 C -0.12 -2.04 5.47 -26.73 -0.15 -2.19 16 9 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 10 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 11 C -0.52 -15.18 9.11 -34.44 -0.31 -15.50 16 12 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -27.64 13.29 55.43 0.74 -26.91 16 15 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 C -0.26 -2.50 11.12 29.12 0.32 -2.17 16 20 S 0.11 0.89 23.18 -107.50 -2.49 -1.60 16 21 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 23 H 0.09 0.59 8.14 -51.92 -0.42 0.16 16 24 H 0.05 0.46 8.10 -51.93 -0.42 0.04 16 25 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.34 4.34 8.72 -39.29 -0.34 4.00 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.18 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 320.18 15.07 4.83 4.83 Total: -1.00 -32.60 320.18 -9.40 -41.99 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -5.80 Total: -2.19 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -0.81 Total: -17.24 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: -0.10 Total: -42.85 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: 0.89 SS G_CDS: -2.49 Total: -1.60 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.60 -9.40 -41.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385267325.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.776 kcal (2) G-P(sol) polarization free energy of solvation -32.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds