Wall clock time and date at job start Mon Mar 30 2020 06:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38173 * 120.01809 * 2 1 4 4 C 1.38430 * 120.03697 * 180.25681 * 3 2 1 5 5 F 1.35092 * 119.97482 * 179.76492 * 4 3 2 6 6 C 1.38483 * 120.05548 * 359.74101 * 4 3 2 7 7 C 1.38127 * 120.02835 * 0.02562 * 6 4 3 8 8 C 1.38687 * 120.01887 * 179.76435 * 2 1 3 9 9 O 1.35950 * 120.02605 * 0.02562 * 8 2 1 10 10 C 1.42905 * 116.99802 * 179.72037 * 9 8 2 11 11 C 1.52999 * 109.46728 * 179.97438 * 10 9 8 12 12 O 1.42904 * 109.47221 * 65.00652 * 11 10 9 13 13 C 1.42898 * 113.99912 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.46866 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99934 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99914 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99894 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00076 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46877 * 60.00141 * 18 16 14 20 20 H 1.48494 * 109.46947 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47096 * 300.00401 * 18 16 14 22 22 H 1.09001 * 109.47465 * 270.23060 * 1 2 3 23 23 H 1.09003 * 109.47336 * 30.23710 * 1 2 3 24 24 H 1.09005 * 109.46819 * 150.23783 * 1 2 3 25 25 H 1.08005 * 119.97950 * 359.97438 * 3 2 1 26 26 H 1.07994 * 119.98608 * 180.02562 * 6 4 3 27 27 H 1.08009 * 120.01008 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.47187 * 300.00204 * 10 9 8 29 29 H 1.09001 * 109.46558 * 60.00252 * 10 9 8 30 30 H 1.09000 * 109.46738 * 185.00163 * 11 10 9 31 31 H 1.08994 * 109.47465 * 305.00250 * 11 10 9 32 32 H 1.09001 * 109.47167 * 299.99421 * 13 12 11 33 33 H 1.08999 * 109.47239 * 59.99584 * 13 12 11 34 34 H 0.96999 * 120.00107 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1964 0.0000 4 6 3.5825 1.1969 -0.0054 5 9 4.2570 2.3673 -0.0102 6 6 4.2765 -0.0015 -0.0053 7 6 3.5880 -1.1990 -0.0005 8 6 2.2008 -1.2008 0.0049 9 8 1.5220 -2.3787 0.0093 10 6 2.3012 -3.5766 0.0080 11 6 1.3702 -4.7906 0.0140 12 8 0.6234 -4.8243 -1.2040 13 6 -0.2813 -5.9261 -1.3007 14 6 -1.0120 -5.8619 -2.6172 15 1 -0.8064 -5.0596 -3.3104 16 6 -1.9431 -6.8274 -2.9367 17 7 -2.1939 -7.8040 -2.0924 18 14 -2.8493 -6.7474 -4.5682 19 1 -1.8695 -6.8113 -5.6823 20 1 -3.7885 -7.8932 -4.6693 21 1 -3.6098 -5.4745 -4.6501 22 1 -0.3634 0.0041 1.0276 23 1 -0.3634 0.8879 -0.5175 24 1 -0.3633 -0.8922 -0.5102 25 1 1.6581 2.1317 -0.0004 26 1 5.3564 0.0001 -0.0091 27 1 4.1296 -2.1335 -0.0009 28 1 2.9267 -3.6022 -0.8843 29 1 2.9334 -3.5996 0.8957 30 1 1.9618 -5.7018 0.1026 31 1 0.6849 -4.7188 0.8585 32 1 0.2764 -6.8606 -1.2396 33 1 -1.0009 -5.8783 -0.4834 34 1 -2.8486 -8.4834 -2.3173 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385339149.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:36 Heat of formation + Delta-G solvation = -116.754853 kcal Electronic energy + Delta-G solvation = -17876.473055 eV Core-core repulsion = 14689.065156 eV Total energy + Delta-G solvation = -3187.407898 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.89222 -40.21914 -37.60489 -36.39673 -32.97446 -32.75044 -30.47264 -29.22242 -27.03111 -26.81654 -23.62059 -22.35745 -21.76903 -21.39870 -18.18983 -17.12695 -16.88416 -16.36252 -16.29176 -15.62996 -15.11431 -14.85288 -14.47539 -14.38473 -14.11017 -13.52684 -13.31077 -13.27502 -13.03869 -12.43536 -11.97934 -11.90964 -11.76204 -11.51473 -11.00554 -10.96495 -10.82684 -10.74435 -10.52612 -10.06893 -9.16164 -9.09492 -8.89435 -8.23330 -8.03738 -6.13375 -4.15260 1.03550 1.15649 3.24391 3.31445 3.34025 3.38060 3.45651 4.19735 4.30579 4.53915 4.60506 4.70372 4.96098 5.03107 5.23209 5.23568 5.33916 5.38997 5.54649 5.65599 5.73550 5.79578 5.86730 5.99514 6.03340 6.06293 6.23042 6.35755 6.67015 7.02704 7.37304 7.42786 7.76376 8.10693 8.50305 8.97039 9.49621 10.98149 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.033702 B = 0.003784 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.605659 B = 7397.876923 C = 7791.076419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.089 4.089 3 C -0.117 4.117 4 C 0.052 3.948 5 F -0.146 7.146 6 C -0.119 4.119 7 C -0.183 4.183 8 C 0.130 3.870 9 O -0.292 6.292 10 C 0.063 3.937 11 C 0.063 3.937 12 O -0.390 6.390 13 C 0.195 3.805 14 C -0.516 4.516 15 H 0.066 0.934 16 C 0.057 3.943 17 N -0.899 5.899 18 Si 0.909 3.091 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.274 1.274 22 H 0.071 0.929 23 H 0.066 0.934 24 H 0.083 0.917 25 H 0.139 0.861 26 H 0.134 0.866 27 H 0.138 0.862 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.006 0.994 33 H 0.007 0.993 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.749 14.131 6.719 18.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.090 4.090 3 C -0.136 4.136 4 C 0.033 3.967 5 F -0.124 7.124 6 C -0.138 4.138 7 C -0.201 4.201 8 C 0.084 3.916 9 O -0.204 6.204 10 C -0.012 4.012 11 C -0.015 4.015 12 O -0.310 6.310 13 C 0.121 3.879 14 C -0.554 4.554 15 H 0.085 0.915 16 C -0.144 4.144 17 N -0.538 5.538 18 Si 0.736 3.264 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.199 1.199 22 H 0.090 0.910 23 H 0.085 0.915 24 H 0.102 0.898 25 H 0.157 0.843 26 H 0.152 0.848 27 H 0.156 0.844 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.023 0.977 33 H 0.025 0.975 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.455 14.085 6.591 18.739 hybrid contribution -0.056 -0.206 -0.559 0.598 sum 10.399 13.880 6.032 18.362 Atomic orbital electron populations 1.20684 0.89503 1.03741 1.02693 1.19142 0.97124 0.89440 1.03280 1.20833 0.92081 0.98524 1.02180 1.17497 0.90081 0.81237 1.07887 1.91464 1.80357 1.46115 1.94507 1.20863 1.00533 0.90716 1.01644 1.21130 0.93012 0.98917 1.07076 1.18966 0.90279 0.86651 0.95748 1.86257 1.35141 1.11683 1.87352 1.23014 0.94280 0.82565 1.01343 1.22274 0.94560 0.94032 0.90638 1.87924 1.56583 1.51510 1.34960 1.20229 0.86896 0.83240 0.97553 1.21014 1.21394 1.10836 1.02187 0.91547 1.24943 0.96688 0.94959 0.97839 1.69949 1.34358 1.13550 1.35975 0.86382 0.79360 0.77629 0.83046 1.19998 1.21132 1.19944 0.91029 0.91531 0.89829 0.84327 0.84764 0.84420 0.91172 0.91223 0.92099 0.93214 0.97651 0.97516 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 9.79 36.00 0.35 -0.97 16 2 C -0.09 -1.15 5.89 -104.48 -0.62 -1.77 16 3 C -0.12 -1.36 9.68 -39.53 -0.38 -1.74 16 4 C 0.05 0.62 7.30 -39.42 -0.29 0.34 16 5 F -0.15 -1.77 17.26 2.25 0.04 -1.73 16 6 C -0.12 -1.31 10.02 -39.53 -0.40 -1.71 16 7 C -0.18 -2.16 9.03 -39.44 -0.36 -2.51 16 8 C 0.13 1.82 6.66 -39.24 -0.26 1.56 16 9 O -0.29 -4.69 9.14 -24.43 -0.22 -4.92 16 10 C 0.06 0.89 5.12 37.16 0.19 1.08 16 11 C 0.06 1.10 6.32 37.16 0.23 1.34 16 12 O -0.39 -9.31 10.29 -40.08 -0.41 -9.73 16 13 C 0.19 5.29 5.69 36.01 0.20 5.50 16 14 C -0.52 -15.18 9.43 -34.44 -0.32 -15.51 16 15 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 18 Si 0.91 21.77 29.54 -169.99 -5.02 16.75 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 22 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 24 H 0.08 1.19 7.53 -51.93 -0.39 0.80 16 25 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 26 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 27 H 0.14 1.35 6.30 -52.48 -0.33 1.02 16 28 H 0.07 0.96 7.66 -51.93 -0.40 0.56 16 29 H 0.07 0.74 7.66 -51.93 -0.40 0.35 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 33 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 301.42 15.07 4.54 4.54 Total: -1.00 -31.78 301.42 -6.52 -38.30 By element: Atomic # 1 Polarization: 0.07 SS G_CDS: -4.44 Total: -4.37 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -1.74 Total: -12.85 kcal Atomic # 7 Polarization: -26.74 SS G_CDS: 0.74 Total: -26.00 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.64 Total: -14.64 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.78 -6.52 -38.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385339149.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.455 kcal (2) G-P(sol) polarization free energy of solvation -31.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds