Wall clock time and date at job start Mon Mar 30 2020 06:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38173 * 120.01809 * 2 1 4 4 C 1.38430 * 120.03697 * 180.25681 * 3 2 1 5 5 F 1.35092 * 119.97482 * 179.76492 * 4 3 2 6 6 C 1.38483 * 120.05548 * 359.74101 * 4 3 2 7 7 C 1.38127 * 120.02835 * 0.02562 * 6 4 3 8 8 C 1.38687 * 120.01887 * 179.76435 * 2 1 3 9 9 O 1.35950 * 120.02605 * 0.02562 * 8 2 1 10 10 C 1.42905 * 116.99802 * 179.72037 * 9 8 2 11 11 C 1.52999 * 109.46728 * 179.97438 * 10 9 8 12 12 O 1.42904 * 109.47221 * 65.00652 * 11 10 9 13 13 C 1.42898 * 113.99912 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.46866 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99934 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99914 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99894 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00076 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46877 * 60.00141 * 18 16 14 20 20 H 1.48494 * 109.46947 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47096 * 300.00401 * 18 16 14 22 22 H 1.09001 * 109.47465 * 270.23060 * 1 2 3 23 23 H 1.09003 * 109.47336 * 30.23710 * 1 2 3 24 24 H 1.09005 * 109.46819 * 150.23783 * 1 2 3 25 25 H 1.08005 * 119.97950 * 359.97438 * 3 2 1 26 26 H 1.07994 * 119.98608 * 180.02562 * 6 4 3 27 27 H 1.08009 * 120.01008 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.47187 * 300.00204 * 10 9 8 29 29 H 1.09001 * 109.46558 * 60.00252 * 10 9 8 30 30 H 1.09000 * 109.46738 * 185.00163 * 11 10 9 31 31 H 1.08994 * 109.47465 * 305.00250 * 11 10 9 32 32 H 1.09001 * 109.47167 * 299.99421 * 13 12 11 33 33 H 1.08999 * 109.47239 * 59.99584 * 13 12 11 34 34 H 0.96999 * 120.00107 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1964 0.0000 4 6 3.5825 1.1969 -0.0054 5 9 4.2570 2.3673 -0.0102 6 6 4.2765 -0.0015 -0.0053 7 6 3.5880 -1.1990 -0.0005 8 6 2.2008 -1.2008 0.0049 9 8 1.5220 -2.3787 0.0093 10 6 2.3012 -3.5766 0.0080 11 6 1.3702 -4.7906 0.0140 12 8 0.6234 -4.8243 -1.2040 13 6 -0.2813 -5.9261 -1.3007 14 6 -1.0120 -5.8619 -2.6172 15 1 -0.8064 -5.0596 -3.3104 16 6 -1.9431 -6.8274 -2.9367 17 7 -2.1939 -7.8040 -2.0924 18 14 -2.8493 -6.7474 -4.5682 19 1 -1.8695 -6.8113 -5.6823 20 1 -3.7885 -7.8932 -4.6693 21 1 -3.6098 -5.4745 -4.6501 22 1 -0.3634 0.0041 1.0276 23 1 -0.3634 0.8879 -0.5175 24 1 -0.3633 -0.8922 -0.5102 25 1 1.6581 2.1317 -0.0004 26 1 5.3564 0.0001 -0.0091 27 1 4.1296 -2.1335 -0.0009 28 1 2.9267 -3.6022 -0.8843 29 1 2.9334 -3.5996 0.8957 30 1 1.9618 -5.7018 0.1026 31 1 0.6849 -4.7188 0.8585 32 1 0.2764 -6.8606 -1.2396 33 1 -1.0009 -5.8783 -0.4834 34 1 -2.8486 -8.4834 -2.3173 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385339149.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:36 Heat of formation + Delta-G solvation = -135.801295 kcal Electronic energy + Delta-G solvation = -17877.298970 eV Core-core repulsion = 14689.065156 eV Total energy + Delta-G solvation = -3188.233814 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.81953 -41.22939 -38.91657 -37.91873 -34.95602 -33.85646 -31.77254 -30.34525 -28.98572 -27.82250 -24.88288 -24.39226 -22.75825 -22.48680 -19.21564 -18.68891 -18.05026 -17.77102 -17.73469 -16.81930 -16.53642 -16.36841 -15.96255 -15.58030 -15.52487 -14.71741 -14.43538 -14.33517 -14.12026 -13.81900 -13.48048 -13.18633 -13.07901 -12.80004 -12.74766 -12.64890 -12.40743 -12.01183 -11.80050 -11.69030 -11.30197 -10.89467 -10.27103 -9.98649 -9.02468 -8.33093 -6.45488 0.14383 0.20332 1.39957 1.44458 1.52960 2.19367 2.34153 2.53031 3.00849 3.09883 3.29261 3.66620 3.74399 3.97914 4.11763 4.14688 4.25755 4.37087 4.47527 4.55472 4.65269 4.72914 4.78846 4.80992 4.85215 5.10628 5.12028 5.16646 5.28439 5.38886 5.53284 5.75272 5.94508 6.39631 6.51556 6.79383 7.26353 8.78941 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.033702 B = 0.003784 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.605659 B = 7397.876923 C = 7791.076419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.105 4.105 3 C -0.115 4.115 4 C 0.044 3.956 5 F -0.147 7.147 6 C -0.115 4.115 7 C -0.180 4.180 8 C 0.105 3.895 9 O -0.322 6.322 10 C 0.067 3.933 11 C 0.050 3.950 12 O -0.409 6.409 13 C 0.209 3.791 14 C -0.552 4.552 15 H 0.059 0.941 16 C 0.009 3.991 17 N -0.929 5.929 18 Si 0.982 3.018 19 H -0.265 1.265 20 H -0.274 1.274 21 H -0.267 1.267 22 H 0.079 0.921 23 H 0.085 0.915 24 H 0.053 0.947 25 H 0.159 0.841 26 H 0.160 0.840 27 H 0.159 0.841 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.082 0.918 31 H 0.048 0.952 32 H -0.007 1.007 33 H -0.014 1.014 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.614 14.990 6.266 19.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.106 4.106 3 C -0.134 4.134 4 C 0.025 3.975 5 F -0.126 7.126 6 C -0.134 4.134 7 C -0.199 4.199 8 C 0.059 3.941 9 O -0.236 6.236 10 C -0.007 4.007 11 C -0.026 4.026 12 O -0.329 6.329 13 C 0.134 3.866 14 C -0.590 4.590 15 H 0.078 0.922 16 C -0.190 4.190 17 N -0.569 5.569 18 Si 0.804 3.196 19 H -0.190 1.190 20 H -0.198 1.198 21 H -0.191 1.191 22 H 0.098 0.902 23 H 0.104 0.896 24 H 0.072 0.928 25 H 0.177 0.823 26 H 0.178 0.822 27 H 0.176 0.824 28 H 0.094 0.906 29 H 0.130 0.870 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.010 0.990 33 H 0.004 0.996 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.343 14.959 6.156 19.757 hybrid contribution -0.248 -0.417 -0.328 0.585 sum 11.095 14.542 5.828 19.197 Atomic orbital electron populations 1.20648 0.89431 1.03145 1.03080 1.19331 0.97501 0.89822 1.03914 1.21010 0.92245 0.98809 1.01336 1.17698 0.90351 0.81539 1.07956 1.91463 1.80355 1.46244 1.94527 1.21155 1.01869 0.90023 1.00352 1.21351 0.92159 1.00157 1.06207 1.19252 0.91378 0.86122 0.97347 1.86201 1.36536 1.12696 1.88117 1.23045 0.93290 0.80791 1.03593 1.22670 0.94811 0.97048 0.88107 1.87867 1.56598 1.50171 1.38279 1.19840 0.86834 0.83761 0.96158 1.21367 1.22921 1.11441 1.03239 0.92230 1.25933 0.97089 0.94096 1.01903 1.70049 1.34774 1.14072 1.37962 0.85258 0.78150 0.78185 0.77986 1.18964 1.19829 1.19150 0.90232 0.89580 0.92821 0.82344 0.82212 0.82381 0.90642 0.87022 0.90059 0.93370 0.98970 0.99618 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.56 9.79 71.23 0.70 -1.86 16 2 C -0.10 -2.65 5.89 -19.77 -0.12 -2.77 16 3 C -0.12 -2.49 9.68 22.30 0.22 -2.28 16 4 C 0.04 0.96 7.30 22.37 0.16 1.12 16 5 F -0.15 -3.27 17.26 44.97 0.78 -2.49 16 6 C -0.12 -2.26 10.02 22.30 0.22 -2.04 16 7 C -0.18 -3.87 9.03 22.36 0.20 -3.67 16 8 C 0.10 2.85 6.66 22.49 0.15 3.00 16 9 O -0.32 -10.32 9.14 -88.35 -0.81 -11.12 16 10 C 0.07 1.82 5.12 71.98 0.37 2.19 16 11 C 0.05 1.77 6.32 71.98 0.45 2.23 16 12 O -0.41 -20.03 10.29 -144.35 -1.49 -21.51 16 13 C 0.21 11.74 5.69 71.24 0.41 12.14 16 14 C -0.55 -33.17 9.43 25.60 0.24 -32.93 16 15 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 16 C 0.01 0.49 5.46 84.66 0.46 0.95 16 17 N -0.93 -55.72 13.29 21.45 0.28 -55.44 16 18 Si 0.98 44.41 29.54 68.60 2.03 46.44 16 19 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 22 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.09 1.65 8.09 -2.39 -0.02 1.64 16 24 H 0.05 1.60 7.53 -2.38 -0.02 1.58 16 25 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 26 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 27 H 0.16 2.63 6.30 -2.91 -0.02 2.61 16 28 H 0.08 1.95 7.66 -2.39 -0.02 1.93 16 29 H 0.11 2.08 7.66 -2.39 -0.02 2.06 16 30 H 0.08 2.50 8.14 -2.39 -0.02 2.49 16 31 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 32 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 33 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 34 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -69.13 301.42 5.35 -63.77 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: 1.09 Total: 4.27 kcal Atomic # 6 Polarization: -27.39 SS G_CDS: 3.47 Total: -23.92 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 0.28 Total: -55.44 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -2.29 Total: -32.64 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.78 Total: -2.49 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -69.13 5.35 -63.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385339149.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.027 kcal (2) G-P(sol) polarization free energy of solvation -69.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds