Wall clock time and date at job start Mon Mar 30 2020 06:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00137 * 2 1 4 4 H 1.48500 * 109.46900 * 269.99784 * 3 2 1 5 5 H 1.48505 * 109.46948 * 29.99512 * 3 2 1 6 6 H 1.48492 * 109.47375 * 149.99726 * 3 2 1 7 7 C 1.37883 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99628 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00262 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47242 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46947 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47320 * 180.02562 * 11 10 9 13 13 O 1.42894 * 109.47678 * 180.02562 * 12 11 10 14 14 C 1.42895 * 114.00459 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.47391 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.47116 * 179.97438 * 15 14 13 17 17 C 1.33391 * 125.19937 * 90.00083 * 16 15 14 18 18 C 1.38423 * 114.92045 * 179.97438 * 17 16 15 19 19 C 1.33390 * 114.91979 * 359.97438 * 18 17 16 20 20 S 1.75878 * 125.20693 * 269.69344 * 16 15 14 21 21 H 0.96997 * 120.00129 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.46910 * 59.99400 * 9 7 2 23 23 H 1.09005 * 109.46818 * 300.00093 * 9 7 2 24 24 H 1.09002 * 109.47176 * 59.99979 * 10 9 7 25 25 H 1.09002 * 109.46611 * 299.99733 * 10 9 7 26 26 H 1.08999 * 109.47671 * 59.99564 * 11 10 9 27 27 H 1.09005 * 109.47055 * 299.99842 * 11 10 9 28 28 H 1.08999 * 109.47107 * 59.99216 * 12 11 10 29 29 H 1.09005 * 109.46924 * 299.99918 * 12 11 10 30 30 H 1.09000 * 109.47558 * 59.99233 * 14 13 12 31 31 H 1.09008 * 109.47043 * 299.99918 * 14 13 12 32 32 H 1.09000 * 109.46884 * 60.00145 * 15 14 13 33 33 H 1.09000 * 109.46955 * 299.99461 * 15 14 13 34 34 H 1.07995 * 122.54106 * 359.95411 * 17 16 15 35 35 H 1.08001 * 122.53959 * 180.02562 * 18 17 16 36 36 H 1.07998 * 125.20163 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6366 0.0009 12 6 6.0615 -4.0790 0.0002 13 8 7.4905 -4.0791 0.0007 14 6 8.0717 -5.3845 -0.0005 15 6 9.5969 -5.2637 -0.0004 16 6 10.2099 -6.6405 -0.0011 17 6 10.5227 -7.3423 -1.0914 18 6 11.0772 -8.5865 -0.8450 19 6 11.2152 -8.8947 0.4454 20 16 10.6293 -7.5644 1.4355 21 1 -0.4850 0.8400 0.0004 22 1 3.8745 -0.6800 0.8911 23 1 3.8752 -0.6805 -0.8889 24 1 3.6585 -3.1503 -0.8893 25 1 3.6578 -3.1506 0.8908 26 1 5.9149 -2.1228 0.8909 27 1 5.9147 -2.1227 -0.8891 28 1 5.6981 -4.5925 -0.8900 29 1 5.6982 -4.5933 0.8900 30 1 7.7504 -5.9245 -0.8911 31 1 7.7498 -5.9264 0.8888 32 1 9.9186 -4.7236 0.8901 33 1 9.9185 -4.7220 -0.8900 34 1 10.3557 -6.9684 -2.0907 35 1 11.3762 -9.2565 -1.6376 36 1 11.6273 -9.8183 0.8242 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385406580.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:56 Heat of formation + Delta-G solvation = -41.829489 kcal Electronic energy + Delta-G solvation = -15281.774565 eV Core-core repulsion = 12663.828850 eV Total energy + Delta-G solvation = -2617.945714 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.108 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.58836 -37.80005 -34.88764 -33.19754 -32.15657 -29.35999 -27.90233 -24.97713 -24.16433 -22.43896 -21.48121 -20.03917 -19.56635 -17.49522 -16.67017 -16.37058 -16.20780 -15.67155 -14.73869 -14.66849 -14.11157 -13.53645 -13.23651 -13.14376 -12.73476 -12.61654 -12.51797 -11.95665 -11.83487 -11.67878 -11.31452 -11.16918 -10.99078 -10.69291 -10.61657 -9.88780 -9.69425 -9.56676 -9.54613 -9.15183 -8.98831 -8.80273 -8.51133 -6.01880 -3.99676 0.64547 1.29719 1.67792 2.40217 3.33445 3.40548 3.45407 3.62200 4.48128 4.60006 4.71484 4.79546 4.96733 5.12111 5.22759 5.29016 5.30336 5.33220 5.45124 5.54498 5.68223 5.69998 5.82925 5.95653 6.01846 6.02360 6.16292 6.35597 6.64037 6.73496 6.91263 7.26179 7.34137 7.47095 7.82590 8.56762 9.03057 9.60934 11.11639 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.064195 B = 0.002546 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.065542 B =10994.023696 C =11078.413523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.100 4.100 11 C -0.119 4.119 12 C 0.064 3.936 13 O -0.391 6.391 14 C 0.068 3.932 15 C -0.049 4.049 16 C -0.170 4.170 17 C -0.139 4.139 18 C -0.133 4.133 19 C -0.217 4.217 20 S 0.099 5.901 21 H 0.262 0.738 22 H 0.016 0.984 23 H 0.012 0.988 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.141 -16.773 0.073 29.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.137 4.137 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.138 4.138 11 C -0.157 4.157 12 C -0.012 4.012 13 O -0.311 6.311 14 C -0.010 4.010 15 C -0.088 4.088 16 C -0.287 4.287 17 C -0.169 4.169 18 C -0.164 4.164 19 C -0.353 4.353 20 S 0.363 5.637 21 H 0.072 0.928 22 H 0.034 0.966 23 H 0.030 0.970 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.159 0.841 35 H 0.157 0.843 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 23.995 -16.249 1.638 29.025 hybrid contribution 0.292 0.242 -1.539 1.585 sum 24.287 -16.007 0.099 29.088 Atomic orbital electron populations 1.69919 1.06314 1.26854 1.51348 1.25051 0.94753 0.99248 0.94606 0.86755 0.80384 0.83518 0.78508 1.20309 1.21432 1.18942 1.21172 0.89607 0.94438 1.50625 0.91090 1.19568 0.97004 0.92226 0.96331 1.21400 0.91036 1.00167 1.01178 1.21672 0.97492 0.93799 1.02709 1.22674 0.79252 0.99299 0.99996 1.87845 1.20909 1.26827 1.95475 1.22386 0.92356 0.85672 1.00553 1.19998 0.93569 0.90515 1.04709 1.24369 1.07546 1.00993 0.95791 1.20198 1.02391 0.94837 0.99492 1.20188 1.02338 0.97400 0.96472 1.25642 1.09333 1.03405 0.96917 1.84401 1.60211 1.09413 1.09690 0.92783 0.96558 0.97004 0.92719 0.92686 0.91666 0.91672 0.93404 0.93426 0.93127 0.93331 0.89820 0.88985 0.84114 0.84259 0.81929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.33 13.96 55.43 0.77 -27.56 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.12 27.47 -169.99 -4.67 17.45 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.52 -15.13 9.66 -34.44 -0.33 -15.46 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.01 -0.34 4.04 -27.89 -0.11 -0.45 16 10 C -0.10 -1.99 5.15 -26.73 -0.14 -2.13 16 11 C -0.12 -1.99 5.58 -26.73 -0.15 -2.14 16 12 C 0.06 0.92 5.94 37.16 0.22 1.14 16 13 O -0.39 -5.52 10.34 -35.23 -0.36 -5.89 16 14 C 0.07 0.75 5.92 37.16 0.22 0.97 16 15 C -0.05 -0.46 6.08 -27.88 -0.17 -0.63 16 16 C -0.17 -1.54 5.76 -36.00 -0.21 -1.75 16 17 C -0.14 -1.16 10.05 -41.21 -0.41 -1.58 16 18 C -0.13 -1.00 10.18 -41.21 -0.42 -1.42 16 19 C -0.22 -1.61 11.23 29.04 0.33 -1.28 16 20 S 0.10 0.84 23.33 -107.50 -2.51 -1.67 16 21 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 22 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 23 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 24 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 317.58 15.07 4.79 4.79 Total: -1.00 -31.49 317.58 -9.10 -40.60 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: -5.85 Total: -4.79 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: -1.27 Total: -22.93 kcal Atomic # 7 Polarization: -28.33 SS G_CDS: 0.77 Total: -27.56 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.36 Total: -5.89 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.67 Total: 17.45 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.51 Total: -1.67 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.49 -9.10 -40.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385406580.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.233 kcal (2) G-P(sol) polarization free energy of solvation -31.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds