Wall clock time and date at job start Mon Mar 30 2020 06:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00137 * 2 1 4 4 H 1.48500 * 109.46900 * 269.99784 * 3 2 1 5 5 H 1.48505 * 109.46948 * 29.99512 * 3 2 1 6 6 H 1.48492 * 109.47375 * 149.99726 * 3 2 1 7 7 C 1.37883 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99628 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00262 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47242 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46947 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47320 * 180.02562 * 11 10 9 13 13 O 1.42894 * 109.47678 * 180.02562 * 12 11 10 14 14 C 1.42895 * 114.00459 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.47391 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.47116 * 179.97438 * 15 14 13 17 17 C 1.33391 * 125.19937 * 90.00083 * 16 15 14 18 18 C 1.38423 * 114.92045 * 179.97438 * 17 16 15 19 19 C 1.33390 * 114.91979 * 359.97438 * 18 17 16 20 20 S 1.75878 * 125.20693 * 269.69344 * 16 15 14 21 21 H 0.96997 * 120.00129 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.46910 * 59.99400 * 9 7 2 23 23 H 1.09005 * 109.46818 * 300.00093 * 9 7 2 24 24 H 1.09002 * 109.47176 * 59.99979 * 10 9 7 25 25 H 1.09002 * 109.46611 * 299.99733 * 10 9 7 26 26 H 1.08999 * 109.47671 * 59.99564 * 11 10 9 27 27 H 1.09005 * 109.47055 * 299.99842 * 11 10 9 28 28 H 1.08999 * 109.47107 * 59.99216 * 12 11 10 29 29 H 1.09005 * 109.46924 * 299.99918 * 12 11 10 30 30 H 1.09000 * 109.47558 * 59.99233 * 14 13 12 31 31 H 1.09008 * 109.47043 * 299.99918 * 14 13 12 32 32 H 1.09000 * 109.46884 * 60.00145 * 15 14 13 33 33 H 1.09000 * 109.46955 * 299.99461 * 15 14 13 34 34 H 1.07995 * 122.54106 * 359.95411 * 17 16 15 35 35 H 1.08001 * 122.53959 * 180.02562 * 18 17 16 36 36 H 1.07998 * 125.20163 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6366 0.0009 12 6 6.0615 -4.0790 0.0002 13 8 7.4905 -4.0791 0.0007 14 6 8.0717 -5.3845 -0.0005 15 6 9.5969 -5.2637 -0.0004 16 6 10.2099 -6.6405 -0.0011 17 6 10.5227 -7.3423 -1.0914 18 6 11.0772 -8.5865 -0.8450 19 6 11.2152 -8.8947 0.4454 20 16 10.6293 -7.5644 1.4355 21 1 -0.4850 0.8400 0.0004 22 1 3.8745 -0.6800 0.8911 23 1 3.8752 -0.6805 -0.8889 24 1 3.6585 -3.1503 -0.8893 25 1 3.6578 -3.1506 0.8908 26 1 5.9149 -2.1228 0.8909 27 1 5.9147 -2.1227 -0.8891 28 1 5.6981 -4.5925 -0.8900 29 1 5.6982 -4.5933 0.8900 30 1 7.7504 -5.9245 -0.8911 31 1 7.7498 -5.9264 0.8888 32 1 9.9186 -4.7236 0.8901 33 1 9.9185 -4.7220 -0.8900 34 1 10.3557 -6.9684 -2.0907 35 1 11.3762 -9.2565 -1.6376 36 1 11.6273 -9.8183 0.8242 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385406580.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:56 Heat of formation + Delta-G solvation = -59.312229 kcal Electronic energy + Delta-G solvation = -15282.532673 eV Core-core repulsion = 12663.828850 eV Total energy + Delta-G solvation = -2618.703823 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.42906 -38.61218 -36.50359 -34.57872 -33.68296 -30.96507 -28.75649 -26.54039 -25.00839 -23.25724 -22.97674 -21.72712 -20.15830 -18.86029 -18.20098 -17.36891 -17.19491 -16.38312 -16.32703 -15.89356 -15.57636 -14.77356 -14.63316 -14.00306 -13.90056 -13.70351 -13.56518 -13.27162 -13.05876 -12.95101 -12.59606 -12.47343 -12.04172 -11.99044 -11.74772 -11.63585 -11.44369 -11.37696 -11.28112 -10.76071 -10.57451 -9.61075 -9.42458 -8.29389 -6.33508 0.03863 0.68993 1.08739 1.36654 1.38495 1.51120 1.81304 2.36979 2.64353 3.05931 3.89833 3.99150 4.05194 4.07896 4.25551 4.31803 4.39921 4.44165 4.53244 4.56850 4.63635 4.69727 4.85453 4.87033 4.96893 5.12389 5.13099 5.19261 5.22740 5.37822 5.54392 5.58186 5.62671 5.67705 6.22257 6.29375 6.74624 7.31260 8.87423 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.064195 B = 0.002546 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.065542 B =10994.023696 C =11078.413523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.000 4.000 3 Si 0.953 3.047 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.247 1.247 7 C -0.534 4.534 8 H 0.032 0.968 9 C -0.014 4.014 10 C -0.093 4.093 11 C -0.110 4.110 12 C 0.068 3.932 13 O -0.405 6.405 14 C 0.066 3.934 15 C -0.042 4.042 16 C -0.186 4.186 17 C -0.141 4.141 18 C -0.143 4.143 19 C -0.214 4.214 20 S 0.079 5.921 21 H 0.266 0.734 22 H 0.020 0.980 23 H 0.019 0.981 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.152 0.848 35 H 0.161 0.839 36 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.441 -16.909 -0.306 31.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.196 4.196 3 Si 0.776 3.224 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.170 1.170 7 C -0.572 4.572 8 H 0.050 0.950 9 C -0.051 4.051 10 C -0.131 4.131 11 C -0.148 4.148 12 C -0.008 4.008 13 O -0.325 6.325 14 C -0.011 4.011 15 C -0.082 4.082 16 C -0.304 4.304 17 C -0.171 4.171 18 C -0.173 4.173 19 C -0.349 4.349 20 S 0.342 5.658 21 H 0.075 0.925 22 H 0.038 0.962 23 H 0.037 0.963 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.114 0.886 34 H 0.170 0.830 35 H 0.179 0.821 36 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 26.313 -16.406 1.260 31.034 hybrid contribution -0.455 0.159 -1.433 1.512 sum 25.858 -16.247 -0.173 30.539 Atomic orbital electron populations 1.70072 1.08316 1.28180 1.52761 1.26074 0.95682 1.03710 0.94139 0.85611 0.79465 0.78036 0.79263 1.19076 1.20928 1.17007 1.21548 0.92282 0.93126 1.50292 0.94981 1.19546 0.93732 0.95236 0.96583 1.21248 0.93506 0.97309 1.01039 1.21484 0.94810 0.95650 1.02843 1.22516 0.79793 0.97665 1.00816 1.87802 1.20455 1.28676 1.95603 1.22532 0.93203 0.84414 1.00956 1.19911 0.92459 0.91013 1.04781 1.24356 1.08745 1.01059 0.96206 1.20474 1.01670 0.95098 0.99859 1.20468 1.02193 0.97455 0.97161 1.25966 1.08636 1.03603 0.96705 1.84454 1.60743 1.10347 1.10244 0.92497 0.96215 0.96270 0.92872 0.92972 0.91632 0.91435 0.92522 0.92776 0.92421 0.93170 0.90137 0.88571 0.83008 0.82139 0.79789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.78 13.96 21.45 0.30 -60.48 16 2 C 0.00 0.02 5.47 84.66 0.46 0.49 16 3 Si 0.95 45.07 27.47 68.60 1.88 46.95 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 5 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 6 H -0.25 -10.85 6.54 99.48 0.65 -10.20 16 7 C -0.53 -31.54 9.66 25.60 0.25 -31.29 16 8 H 0.03 2.07 7.99 -2.91 -0.02 2.04 16 9 C -0.01 -0.65 4.04 29.85 0.12 -0.53 16 10 C -0.09 -3.64 5.15 30.59 0.16 -3.48 16 11 C -0.11 -3.49 5.58 30.59 0.17 -3.32 16 12 C 0.07 1.84 5.94 71.98 0.43 2.27 16 13 O -0.41 -10.75 10.34 -148.98 -1.54 -12.29 16 14 C 0.07 1.36 5.92 71.98 0.43 1.78 16 15 C -0.04 -0.75 6.08 29.85 0.18 -0.57 16 16 C -0.19 -3.15 5.76 24.59 0.14 -3.01 16 17 C -0.14 -2.10 10.05 21.22 0.21 -1.88 16 18 C -0.14 -1.83 10.18 21.22 0.22 -1.62 16 19 C -0.21 -2.74 11.23 66.72 0.75 -1.99 16 20 S 0.08 1.25 23.33 -56.49 -1.32 -0.07 16 21 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 22 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 23 H 0.02 0.88 7.57 -2.38 -0.02 0.86 16 24 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 28 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 35 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 36 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -67.38 317.58 3.81 -63.57 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: 0.97 Total: 5.46 kcal Atomic # 6 Polarization: -46.66 SS G_CDS: 3.51 Total: -43.15 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: 0.30 Total: -60.48 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: -1.54 Total: -12.29 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.88 Total: 46.95 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -1.32 Total: -0.07 kcal Total: -67.38 3.81 -63.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385406580.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.258 kcal (2) G-P(sol) polarization free energy of solvation -67.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds