Wall clock time and date at job start Mon Mar 30 2020 07:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37812 * 121.55822 * 2 1 4 4 C 1.35144 * 114.75987 * 180.02562 * 3 2 1 5 5 C 1.50693 * 127.24907 * 180.26620 * 4 3 2 6 6 N 1.46899 * 109.47479 * 89.70172 * 5 4 3 7 7 C 1.46891 * 111.00105 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47270 * 179.97438 * 7 6 5 9 9 C 1.53007 * 109.47304 * 179.97438 * 8 7 6 10 10 C 1.53005 * 109.47186 * 180.02562 * 9 8 7 11 11 C 1.50696 * 109.46996 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99978 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99451 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00472 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99695 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.46975 * 59.99960 * 15 13 11 17 17 H 1.48495 * 109.47171 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47160 * 300.00172 * 15 13 11 19 19 S 1.72059 * 105.50009 * 359.97438 * 4 3 2 20 20 N 1.30078 * 121.55914 * 179.97438 * 2 1 3 21 21 H 1.08999 * 109.47174 * 269.97482 * 1 2 3 22 22 H 1.09002 * 109.47372 * 29.98233 * 1 2 3 23 23 H 1.09007 * 109.47346 * 149.97629 * 1 2 3 24 24 H 1.07992 * 122.62094 * 0.02562 * 3 2 1 25 25 H 1.09000 * 109.47118 * 209.70556 * 5 4 3 26 26 H 1.09000 * 109.46923 * 329.69577 * 5 4 3 27 27 H 1.00896 * 110.99765 * 56.04794 * 6 5 4 28 28 H 1.09002 * 109.47210 * 300.00078 * 7 6 5 29 29 H 1.09005 * 109.47383 * 59.99680 * 7 6 5 30 30 H 1.08994 * 109.47500 * 300.00054 * 8 7 6 31 31 H 1.09007 * 109.47131 * 60.00181 * 8 7 6 32 32 H 1.08990 * 109.47163 * 300.00057 * 9 8 7 33 33 H 1.09003 * 109.46796 * 60.00619 * 9 8 7 34 34 H 1.09002 * 109.47277 * 300.00441 * 10 9 8 35 35 H 1.09001 * 109.46645 * 60.00054 * 10 9 8 36 36 H 0.96998 * 119.99929 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2282 1.1743 0.0000 4 6 3.5702 1.0143 -0.0005 5 6 4.6179 2.0974 0.0049 6 7 4.9529 2.4478 1.3916 7 6 5.9733 3.5036 1.4360 8 6 6.2949 3.8410 2.8932 9 6 7.3581 4.9403 2.9395 10 6 7.6802 5.2774 4.3968 11 6 8.7269 6.3605 4.4423 12 1 9.1226 6.7681 3.5238 13 6 9.1795 6.8311 5.6567 14 7 8.6973 6.3352 6.7752 15 14 10.4765 8.1743 5.7132 16 1 9.9632 9.3872 5.0270 17 1 10.7892 8.5013 7.1275 18 1 11.7077 7.7026 5.0298 19 16 3.8305 -0.6864 -0.0003 20 7 2.1878 -1.1084 0.0005 21 1 -0.3633 -0.0005 1.0276 22 1 -0.3634 0.8901 -0.5136 23 1 -0.3634 -0.8898 -0.5142 24 1 1.7578 2.1464 0.0004 25 1 5.5121 1.7405 -0.5060 26 1 4.2328 2.9779 -0.5095 27 1 5.2515 1.6340 1.9080 28 1 6.8770 3.1567 0.9350 29 1 5.5972 4.3938 0.9317 30 1 5.3910 4.1880 3.3938 31 1 6.6709 2.9510 3.3978 32 1 8.2619 4.5930 2.4390 33 1 6.9825 5.8305 2.4348 34 1 6.7765 5.6246 4.8977 35 1 8.0559 4.3870 4.9010 36 1 9.0155 6.6666 7.6295 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404321641.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:29 Heat of formation + Delta-G solvation = 10.999013 kcal Electronic energy + Delta-G solvation = -15341.049785 eV Core-core repulsion = 12757.687637 eV Total energy + Delta-G solvation = -2583.362148 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.40262 -36.99185 -34.47992 -32.69347 -31.37577 -29.88376 -28.52657 -26.01641 -23.91126 -22.06103 -21.45370 -20.05043 -19.74531 -18.08579 -16.35929 -16.05062 -15.34415 -15.15901 -14.57451 -14.39898 -14.31083 -13.91550 -13.19209 -13.07935 -12.67700 -12.49040 -12.40851 -12.28336 -11.68460 -11.44832 -11.23394 -10.98541 -10.69002 -10.57576 -10.55182 -10.44696 -9.77803 -9.64326 -9.26549 -9.01915 -8.83937 -8.56103 -8.32499 -5.97676 -4.00137 0.45434 1.25802 1.63378 2.19347 3.34047 3.38423 3.40776 4.02589 4.28797 4.47795 4.70042 4.90821 4.96951 4.98313 5.20843 5.25564 5.37143 5.38786 5.44663 5.48627 5.66109 5.80311 5.83783 6.10056 6.16749 6.43723 6.47155 6.78779 6.85034 6.96077 7.18170 7.22135 7.70543 7.86334 8.03141 8.45672 9.07219 9.63694 11.13653 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.054838 B = 0.002661 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.475131 B =10518.755039 C =10614.404819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.117 3.883 3 C -0.187 4.187 4 C -0.158 4.158 5 C 0.131 3.869 6 N -0.685 5.685 7 C 0.059 3.941 8 C -0.116 4.116 9 C -0.108 4.108 10 C 0.021 3.979 11 C -0.521 4.521 12 H 0.054 0.946 13 C 0.056 3.944 14 N -0.896 5.896 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 S 0.243 5.757 20 N -0.465 5.465 21 H 0.083 0.917 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.158 0.842 25 H 0.047 0.953 26 H 0.095 0.905 27 H 0.342 0.658 28 H 0.030 0.970 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.045 0.955 33 H 0.047 0.953 34 H 0.016 0.984 35 H 0.014 0.986 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.686 -12.116 -15.775 24.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.061 4.061 3 C -0.222 4.222 4 C -0.288 4.288 5 C 0.000 4.000 6 N -0.317 5.317 7 C -0.069 4.069 8 C -0.154 4.154 9 C -0.147 4.147 10 C -0.016 4.016 11 C -0.560 4.560 12 H 0.072 0.928 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.720 3.280 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 S 0.398 5.602 20 N -0.287 5.287 21 H 0.102 0.898 22 H 0.100 0.900 23 H 0.096 0.904 24 H 0.175 0.825 25 H 0.065 0.935 26 H 0.113 0.887 27 H 0.160 0.840 28 H 0.048 0.952 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.034 0.966 35 H 0.033 0.967 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.300 -13.713 -15.522 24.615 hybrid contribution 0.670 1.915 -0.071 2.030 sum -12.630 -11.798 -15.592 23.277 Atomic orbital electron populations 1.20562 0.86529 1.03795 1.03698 1.21528 0.99108 0.88375 0.97097 1.21134 0.92424 1.00687 1.07994 1.25419 0.98786 1.00977 1.03607 1.20323 0.93551 0.94369 0.91740 1.60549 1.46331 1.13872 1.10914 1.22127 0.91633 0.93983 0.99150 1.21648 1.00255 0.99819 0.93678 1.21591 0.95998 0.95919 1.01160 1.19088 0.96464 0.96341 0.89705 1.21246 1.22296 1.20313 0.92114 0.92818 1.25035 0.96789 0.96886 0.95811 1.69954 1.43383 1.42880 0.97338 0.86668 0.82103 0.82384 0.76894 1.20253 1.21295 1.20277 1.84093 1.11069 0.97115 1.67965 1.76685 1.00081 1.26480 1.25502 0.89812 0.90005 0.90433 0.82462 0.93482 0.88686 0.83958 0.95164 0.90889 0.91525 0.92644 0.93621 0.93380 0.96600 0.96726 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.27 36.00 0.37 -0.18 16 2 C 0.12 1.15 6.71 -83.49 -0.56 0.59 16 3 C -0.19 -1.80 9.91 -40.84 -0.40 -2.20 16 4 C -0.16 -1.59 6.11 -35.41 -0.22 -1.81 16 5 C 0.13 1.28 6.26 -4.98 -0.03 1.25 16 6 N -0.68 -8.11 6.49 -115.07 -0.75 -8.86 16 7 C 0.06 0.78 5.68 -3.83 -0.02 0.76 16 8 C -0.12 -1.93 5.48 -26.73 -0.15 -2.07 16 9 C -0.11 -2.20 5.15 -26.72 -0.14 -2.34 16 10 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 11 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 12 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 15 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 S 0.24 2.56 23.72 -107.50 -2.55 0.01 16 20 N -0.47 -5.49 12.05 32.03 0.39 -5.11 16 21 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 22 H 0.08 0.37 8.11 -51.93 -0.42 -0.05 16 23 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.34 3.98 8.72 -39.29 -0.34 3.64 16 28 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.05 0.92 8.14 -51.92 -0.42 0.50 16 32 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 320.17 15.07 4.82 4.82 Total: -1.00 -31.46 320.17 -9.87 -41.33 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -5.80 Total: -3.12 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: -1.70 Total: -19.32 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.38 Total: -40.51 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -2.55 Total: 0.01 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.46 -9.87 -41.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404321641.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.328 kcal (2) G-P(sol) polarization free energy of solvation -31.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds