Wall clock time and date at job start Mon Mar 30 2020 07:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30088 * 121.55565 * 2 1 4 4 S 1.69604 * 107.14708 * 180.22808 * 3 2 1 5 5 C 1.72059 * 95.70276 * 359.74864 * 4 3 2 6 6 C 1.50701 * 127.24679 * 179.97438 * 5 4 3 7 7 C 1.35132 * 105.50554 * 359.97438 * 5 4 3 8 8 C 1.50701 * 122.62270 * 179.97438 * 7 5 4 9 9 N 1.46902 * 109.46751 * 90.00128 * 8 7 5 10 10 C 1.46904 * 110.99882 * 293.95183 * 9 8 7 11 11 C 1.46904 * 110.99713 * 170.00089 * 9 8 7 12 12 H 1.09005 * 109.47078 * 59.99805 * 11 9 8 13 13 C 1.53000 * 109.47015 * 299.99977 * 11 9 8 14 14 C 1.50696 * 109.46794 * 179.97438 * 11 9 8 15 15 H 1.07999 * 120.00319 * 0.02562 * 14 11 9 16 16 C 1.37885 * 119.99717 * 179.97438 * 14 11 9 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 11 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 11 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 H 1.08998 * 109.47156 * 270.23148 * 1 2 3 23 23 H 1.09000 * 109.46754 * 30.23036 * 1 2 3 24 24 H 1.08995 * 109.46686 * 150.22993 * 1 2 3 25 25 H 1.09003 * 109.47039 * 270.02770 * 6 5 4 26 26 H 1.08997 * 109.47504 * 30.02178 * 6 5 4 27 27 H 1.08997 * 109.47241 * 150.02698 * 6 5 4 28 28 H 1.08993 * 109.46820 * 330.00117 * 8 7 5 29 29 H 1.09003 * 109.46823 * 210.00080 * 8 7 5 30 30 H 1.09001 * 109.47028 * 296.04863 * 10 9 8 31 31 H 1.09004 * 109.46903 * 56.05040 * 10 9 8 32 32 H 1.09000 * 109.47139 * 176.04661 * 10 9 8 33 33 H 1.08998 * 109.46637 * 179.97438 * 13 11 9 34 34 H 1.08997 * 109.46749 * 299.99841 * 13 11 9 35 35 H 1.08996 * 109.47024 * 59.99984 * 13 11 9 36 36 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1878 1.1085 0.0000 4 16 3.8305 0.6865 -0.0065 5 6 3.5701 -1.0143 -0.0016 6 6 4.6179 -2.0974 -0.0045 7 6 2.2283 -1.1743 0.0053 8 6 1.5719 -2.5308 0.0109 9 7 1.3655 -2.9692 1.3977 10 6 2.6493 -3.1994 2.0736 11 6 0.5203 -4.1696 1.4500 12 1 1.0003 -4.9764 0.8961 13 6 -0.8418 -3.8618 0.8249 14 6 0.3318 -4.5889 2.8851 15 1 0.7933 -4.0204 3.6789 16 6 -0.4308 -5.6979 3.1848 17 7 -0.5958 -6.0636 4.4373 18 14 -1.2296 -6.6808 1.8118 19 1 -2.5819 -6.1340 1.5335 20 1 -0.3960 -6.5873 0.5864 21 1 -1.3459 -8.1027 2.2240 22 1 -0.3633 0.0042 1.0276 23 1 -0.3633 0.8879 -0.5174 24 1 -0.3632 -0.8920 -0.5102 25 1 4.8658 -2.3604 -1.0329 26 1 5.5126 -1.7390 0.5045 27 1 4.2332 -2.9764 0.5127 28 1 2.2122 -3.2463 -0.5049 29 1 0.6100 -2.4710 -0.4983 30 1 3.1756 -4.0191 1.5844 31 1 3.2555 -2.2950 2.0200 32 1 2.4695 -3.4549 3.1178 33 1 -1.4688 -4.7526 0.8633 34 1 -1.3218 -3.0551 1.3788 35 1 -0.7051 -3.5587 -0.2131 36 1 -1.1325 -6.8436 4.6481 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581862523.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:11 Heat of formation + Delta-G solvation = 51.271335 kcal Electronic energy + Delta-G solvation = -17370.608135 eV Core-core repulsion = 14788.992327 eV Total energy + Delta-G solvation = -2581.615809 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.66202 -36.92237 -33.64062 -32.35756 -30.24170 -29.78512 -28.50699 -26.18207 -24.48805 -23.54969 -21.44681 -19.66229 -18.32411 -17.76495 -16.84761 -15.46300 -15.14399 -14.67967 -14.15493 -13.87632 -13.52950 -13.39281 -13.22796 -12.84486 -12.40070 -12.36655 -12.11325 -11.98679 -11.95804 -11.80448 -11.15827 -10.90281 -10.69762 -10.61830 -10.44644 -10.20398 -10.13070 -9.56500 -9.14022 -9.03690 -8.60508 -8.32244 -7.40265 -6.10571 -4.09635 0.85445 1.64005 2.02479 2.59241 3.22917 3.32109 3.35146 4.35510 4.62114 4.85067 5.00270 5.17295 5.22223 5.35109 5.44075 5.47721 5.65344 5.72742 5.86424 5.90725 6.00347 6.04280 6.11008 6.21232 6.32054 6.36548 6.42410 6.51887 6.72928 6.86275 6.91138 7.21668 7.52916 7.87594 8.00961 8.60382 8.96117 9.50861 11.02081 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.034027 B = 0.006127 C = 0.005723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.672809 B = 4569.177523 C = 4891.316476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.144 3.856 3 N -0.470 5.470 4 S 0.212 5.788 5 C -0.162 4.162 6 C -0.092 4.092 7 C -0.148 4.148 8 C 0.109 3.891 9 N -0.519 5.519 10 C 0.033 3.967 11 C 0.183 3.817 12 H -0.002 1.002 13 C -0.148 4.148 14 C -0.506 4.506 15 H 0.083 0.917 16 C 0.071 3.929 17 N -0.898 5.898 18 Si 0.886 3.114 19 H -0.278 1.278 20 H -0.269 1.269 21 H -0.297 1.297 22 H 0.090 0.910 23 H 0.071 0.929 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.035 0.965 29 H 0.087 0.913 30 H 0.015 0.985 31 H 0.050 0.950 32 H 0.082 0.918 33 H 0.042 0.958 34 H 0.063 0.937 35 H 0.029 0.971 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.011 8.410 -11.014 15.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.034 4.034 3 N -0.291 5.291 4 S 0.367 5.633 5 C -0.292 4.292 6 C -0.151 4.151 7 C -0.165 4.165 8 C -0.022 4.022 9 N -0.243 5.243 10 C -0.115 4.115 11 C 0.075 3.925 12 H 0.016 0.984 13 C -0.205 4.205 14 C -0.544 4.544 15 H 0.101 0.899 16 C -0.131 4.131 17 N -0.536 5.536 18 Si 0.716 3.284 19 H -0.205 1.205 20 H -0.195 1.195 21 H -0.225 1.225 22 H 0.109 0.891 23 H 0.090 0.910 24 H 0.101 0.899 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.112 0.888 28 H 0.053 0.947 29 H 0.105 0.895 30 H 0.033 0.967 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.048 0.952 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.580 10.729 -10.637 16.903 hybrid contribution -0.940 -2.861 -1.005 3.175 sum 6.640 7.868 -11.642 15.541 Atomic orbital electron populations 1.20596 0.86444 1.03091 1.04303 1.21313 0.99066 0.87807 0.95203 1.76730 0.99542 1.26094 1.26737 1.83782 1.12011 0.97327 1.70171 1.25170 0.98242 1.01201 1.04622 1.20609 0.95295 0.96003 1.03176 1.19870 0.91799 0.97781 1.07046 1.20780 0.99244 0.89592 0.92533 1.61937 1.14866 1.35984 1.11535 1.22454 0.90109 0.97747 1.01235 1.19707 0.89222 0.85870 0.97655 0.98449 1.22245 0.99474 1.00986 0.97828 1.20967 1.31805 1.11237 0.90413 0.89886 1.24925 0.96031 0.96950 0.95225 1.69878 1.40091 1.26374 1.17297 0.86892 0.80121 0.78630 0.82728 1.20491 1.19459 1.22509 0.89127 0.91033 0.89919 0.90419 0.90753 0.88825 0.94726 0.89472 0.96676 0.93145 0.89941 0.93958 0.91828 0.95197 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.10 9.94 36.01 0.36 -0.74 16 2 C 0.14 2.22 6.72 -83.48 -0.56 1.66 16 3 N -0.47 -7.48 12.05 32.03 0.39 -7.09 16 4 S 0.21 2.89 23.72 -107.50 -2.55 0.34 16 5 C -0.16 -2.24 5.51 -35.41 -0.20 -2.43 16 6 C -0.09 -1.03 9.24 36.01 0.33 -0.70 16 7 C -0.15 -2.28 4.81 -105.88 -0.51 -2.78 16 8 C 0.11 1.78 4.46 -4.97 -0.02 1.75 16 9 N -0.52 -10.18 4.61 -237.72 -1.10 -11.28 16 10 C 0.03 0.61 7.63 60.07 0.46 1.06 16 11 C 0.18 4.12 1.65 -68.86 -0.11 4.00 16 12 H 0.00 -0.05 7.20 -51.93 -0.37 -0.42 16 13 C -0.15 -3.05 8.47 37.16 0.31 -2.74 16 14 C -0.51 -13.64 8.51 -34.44 -0.29 -13.94 16 15 H 0.08 2.45 6.64 -52.49 -0.35 2.10 16 16 C 0.07 1.97 5.45 -17.82 -0.10 1.87 16 17 N -0.90 -26.81 13.96 55.43 0.77 -26.03 16 18 Si 0.89 21.30 24.37 -169.99 -4.14 17.16 16 19 H -0.28 -6.51 6.87 56.52 0.39 -6.13 16 20 H -0.27 -6.20 6.53 56.52 0.37 -5.83 16 21 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 22 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 23 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.08 1.02 6.35 -51.93 -0.33 0.69 16 25 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.09 1.16 4.32 -51.93 -0.22 0.93 16 28 H 0.03 0.55 7.46 -51.93 -0.39 0.16 16 29 H 0.09 1.35 4.05 -51.93 -0.21 1.14 16 30 H 0.01 0.27 7.06 -51.93 -0.37 -0.10 16 31 H 0.05 0.84 5.27 -51.93 -0.27 0.57 16 32 H 0.08 1.74 6.23 -51.93 -0.32 1.42 16 33 H 0.04 0.92 3.27 -51.93 -0.17 0.75 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.03 0.51 6.20 -51.93 -0.32 0.19 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 284.68 15.07 4.29 4.29 Total: -1.00 -29.84 284.68 -7.29 -37.14 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -4.62 Total: -1.55 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -0.33 Total: -12.97 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: 0.06 Total: -44.41 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.14 Total: 17.16 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -2.55 Total: 0.34 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.84 -7.29 -37.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581862523.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.408 kcal (2) G-P(sol) polarization free energy of solvation -29.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds