Wall clock time and date at job start Mon Mar 30 2020 07:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30088 * 121.55565 * 2 1 4 4 S 1.69604 * 107.14708 * 180.22808 * 3 2 1 5 5 C 1.72059 * 95.70276 * 359.74864 * 4 3 2 6 6 C 1.50701 * 127.24679 * 179.97438 * 5 4 3 7 7 C 1.35132 * 105.50554 * 359.97438 * 5 4 3 8 8 C 1.50701 * 122.62270 * 179.97438 * 7 5 4 9 9 N 1.46902 * 109.46751 * 90.00128 * 8 7 5 10 10 C 1.46904 * 110.99882 * 293.95183 * 9 8 7 11 11 C 1.46904 * 110.99713 * 170.00089 * 9 8 7 12 12 H 1.09005 * 109.47078 * 59.99805 * 11 9 8 13 13 C 1.53000 * 109.47015 * 299.99977 * 11 9 8 14 14 C 1.50696 * 109.46794 * 179.97438 * 11 9 8 15 15 H 1.07999 * 120.00319 * 0.02562 * 14 11 9 16 16 C 1.37885 * 119.99717 * 179.97438 * 14 11 9 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 11 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 11 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 H 1.08998 * 109.47156 * 270.23148 * 1 2 3 23 23 H 1.09000 * 109.46754 * 30.23036 * 1 2 3 24 24 H 1.08995 * 109.46686 * 150.22993 * 1 2 3 25 25 H 1.09003 * 109.47039 * 270.02770 * 6 5 4 26 26 H 1.08997 * 109.47504 * 30.02178 * 6 5 4 27 27 H 1.08997 * 109.47241 * 150.02698 * 6 5 4 28 28 H 1.08993 * 109.46820 * 330.00117 * 8 7 5 29 29 H 1.09003 * 109.46823 * 210.00080 * 8 7 5 30 30 H 1.09001 * 109.47028 * 296.04863 * 10 9 8 31 31 H 1.09004 * 109.46903 * 56.05040 * 10 9 8 32 32 H 1.09000 * 109.47139 * 176.04661 * 10 9 8 33 33 H 1.08998 * 109.46637 * 179.97438 * 13 11 9 34 34 H 1.08997 * 109.46749 * 299.99841 * 13 11 9 35 35 H 1.08996 * 109.47024 * 59.99984 * 13 11 9 36 36 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1878 1.1085 0.0000 4 16 3.8305 0.6865 -0.0065 5 6 3.5701 -1.0143 -0.0016 6 6 4.6179 -2.0974 -0.0045 7 6 2.2283 -1.1743 0.0053 8 6 1.5719 -2.5308 0.0109 9 7 1.3655 -2.9692 1.3977 10 6 2.6493 -3.1994 2.0736 11 6 0.5203 -4.1696 1.4500 12 1 1.0003 -4.9764 0.8961 13 6 -0.8418 -3.8618 0.8249 14 6 0.3318 -4.5889 2.8851 15 1 0.7933 -4.0204 3.6789 16 6 -0.4308 -5.6979 3.1848 17 7 -0.5958 -6.0636 4.4373 18 14 -1.2296 -6.6808 1.8118 19 1 -2.5819 -6.1340 1.5335 20 1 -0.3960 -6.5873 0.5864 21 1 -1.3459 -8.1027 2.2240 22 1 -0.3633 0.0042 1.0276 23 1 -0.3633 0.8879 -0.5174 24 1 -0.3632 -0.8920 -0.5102 25 1 4.8658 -2.3604 -1.0329 26 1 5.5126 -1.7390 0.5045 27 1 4.2332 -2.9764 0.5127 28 1 2.2122 -3.2463 -0.5049 29 1 0.6100 -2.4710 -0.4983 30 1 3.1756 -4.0191 1.5844 31 1 3.2555 -2.2950 2.0200 32 1 2.4695 -3.4549 3.1178 33 1 -1.4688 -4.7526 0.8633 34 1 -1.3218 -3.0551 1.3788 35 1 -0.7051 -3.5587 -0.2131 36 1 -1.1325 -6.8436 4.6481 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581862523.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:10 Heat of formation + Delta-G solvation = 30.720945 kcal Electronic energy + Delta-G solvation = -17371.499267 eV Core-core repulsion = 14788.992327 eV Total energy + Delta-G solvation = -2582.506940 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.84532 -38.43764 -35.10960 -34.02477 -31.83465 -31.07776 -29.59109 -27.68378 -26.16808 -25.04922 -22.59252 -21.35933 -19.47966 -18.90696 -18.80262 -17.11596 -16.53247 -16.01375 -15.69024 -15.24695 -14.87574 -14.79386 -14.49465 -14.19127 -13.90767 -13.64811 -13.53168 -13.21843 -13.09673 -12.99109 -12.62274 -12.55565 -12.40220 -12.15855 -11.86928 -11.69585 -11.43734 -11.35222 -10.98124 -10.69933 -10.20176 -9.44362 -8.93265 -8.24562 -6.27814 -0.24888 0.55852 0.92673 1.33865 1.38345 1.43785 1.48379 2.34916 3.09682 3.37265 3.59895 3.86074 4.11030 4.29295 4.40127 4.43924 4.54819 4.60156 4.63602 4.66752 4.69245 4.76654 4.84006 4.85181 4.89964 5.01545 5.07632 5.13091 5.26739 5.32075 5.48954 5.69330 5.80247 6.04599 6.37637 6.72066 6.79848 7.37099 8.91746 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.034027 B = 0.006127 C = 0.005723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.672809 B = 4569.177523 C = 4891.316476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.136 3.864 3 N -0.501 5.501 4 S 0.238 5.762 5 C -0.155 4.155 6 C -0.094 4.094 7 C -0.172 4.172 8 C 0.115 3.885 9 N -0.531 5.531 10 C 0.041 3.959 11 C 0.186 3.814 12 H -0.006 1.006 13 C -0.145 4.145 14 C -0.505 4.505 15 H 0.040 0.960 16 C 0.011 3.989 17 N -0.950 5.950 18 Si 0.948 3.052 19 H -0.265 1.265 20 H -0.247 1.247 21 H -0.303 1.303 22 H 0.080 0.920 23 H 0.084 0.916 24 H 0.093 0.907 25 H 0.100 0.900 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.046 0.954 29 H 0.097 0.903 30 H 0.025 0.975 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.033 0.967 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.490 8.665 -13.750 17.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.041 4.041 3 N -0.323 5.323 4 S 0.394 5.606 5 C -0.285 4.285 6 C -0.152 4.152 7 C -0.188 4.188 8 C -0.014 4.014 9 N -0.256 5.256 10 C -0.107 4.107 11 C 0.078 3.922 12 H 0.012 0.988 13 C -0.202 4.202 14 C -0.543 4.543 15 H 0.058 0.942 16 C -0.186 4.186 17 N -0.591 5.591 18 Si 0.776 3.224 19 H -0.191 1.191 20 H -0.171 1.171 21 H -0.231 1.231 22 H 0.099 0.901 23 H 0.103 0.897 24 H 0.111 0.889 25 H 0.119 0.881 26 H 0.111 0.889 27 H 0.101 0.899 28 H 0.064 0.936 29 H 0.115 0.885 30 H 0.043 0.957 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.069 11.013 -13.396 19.127 hybrid contribution -0.935 -2.824 -0.099 2.977 sum 7.133 8.189 -13.496 17.322 Atomic orbital electron populations 1.20640 0.85464 1.04301 1.03951 1.21580 0.99989 0.87740 0.94801 1.76652 1.00904 1.26838 1.27929 1.83665 1.10677 0.96871 1.69417 1.25585 0.98411 1.02047 1.02455 1.20731 0.95112 0.94659 1.04742 1.19835 0.92424 0.97255 1.09295 1.20756 1.00259 0.90193 0.90241 1.61835 1.15046 1.34479 1.14217 1.22340 0.90270 0.98973 0.99114 1.19529 0.91098 0.86992 0.94548 0.98817 1.22153 0.97563 1.00486 1.00033 1.21235 1.30454 1.10470 0.92143 0.94150 1.25778 0.96934 0.98306 0.97542 1.70043 1.41802 1.27385 1.19857 0.85868 0.79896 0.76431 0.80235 1.19103 1.17098 1.23116 0.90139 0.89706 0.88873 0.88135 0.88894 0.89880 0.93624 0.88455 0.95671 0.91230 0.93613 0.94813 0.92299 0.91238 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.03 9.94 71.24 0.71 -1.32 16 2 C 0.14 3.95 6.72 42.72 0.29 4.24 16 3 N -0.50 -15.15 12.05 -52.58 -0.63 -15.79 16 4 S 0.24 5.96 23.72 -56.49 -1.34 4.62 16 5 C -0.15 -3.84 5.51 24.97 0.14 -3.71 16 6 C -0.09 -1.79 9.24 71.24 0.66 -1.13 16 7 C -0.17 -4.86 4.81 -20.68 -0.10 -4.96 16 8 C 0.12 3.44 4.46 85.56 0.38 3.82 16 9 N -0.53 -20.20 4.61 -906.01 -4.18 -24.38 16 10 C 0.04 1.51 7.63 127.69 0.97 2.49 16 11 C 0.19 8.15 1.65 44.17 0.07 8.22 16 12 H -0.01 -0.25 7.20 -2.38 -0.02 -0.27 16 13 C -0.15 -5.59 8.47 71.98 0.61 -4.98 16 14 C -0.50 -27.76 8.51 25.60 0.22 -27.54 16 15 H 0.04 2.51 6.64 -2.91 -0.02 2.49 16 16 C 0.01 0.64 5.45 84.66 0.46 1.10 16 17 N -0.95 -58.54 13.96 21.45 0.30 -58.24 16 18 Si 0.95 43.40 24.37 68.60 1.67 45.07 16 19 H -0.26 -11.51 6.87 99.48 0.68 -10.82 16 20 H -0.25 -10.33 6.53 99.48 0.65 -9.68 16 21 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 22 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 23 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.09 2.05 6.35 -2.39 -0.02 2.03 16 25 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.08 1.81 4.32 -2.39 -0.01 1.80 16 28 H 0.05 1.28 7.46 -2.39 -0.02 1.26 16 29 H 0.10 2.67 4.05 -2.39 -0.01 2.66 16 30 H 0.02 0.86 7.06 -2.39 -0.02 0.85 16 31 H 0.07 2.25 5.27 -2.38 -0.01 2.24 16 32 H 0.05 2.00 6.23 -2.39 -0.01 1.99 16 33 H 0.03 1.35 3.27 -2.39 -0.01 1.35 16 34 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.07 2.11 6.20 -2.39 -0.01 2.10 16 36 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -65.39 284.68 1.24 -64.15 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 1.02 Total: 8.33 kcal Atomic # 6 Polarization: -28.18 SS G_CDS: 4.41 Total: -23.77 kcal Atomic # 7 Polarization: -93.89 SS G_CDS: -4.52 Total: -98.41 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.67 Total: 45.07 kcal Atomic # 16 Polarization: 5.96 SS G_CDS: -1.34 Total: 4.62 kcal Total: -65.39 1.24 -64.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581862523.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.869 kcal (2) G-P(sol) polarization free energy of solvation -65.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds