Wall clock time and date at job start Mon Mar 30 2020 07:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30080 * 121.55998 * 2 1 4 4 S 1.69602 * 107.15250 * 180.22989 * 3 2 1 5 5 C 1.72052 * 95.70220 * 359.74817 * 4 3 2 6 6 C 1.50701 * 127.24625 * 179.97438 * 5 4 3 7 7 C 1.35136 * 105.50422 * 0.02562 * 5 4 3 8 8 C 1.50696 * 122.62023 * 179.97438 * 7 5 4 9 9 N 1.46906 * 109.47351 * 89.99567 * 8 7 5 10 10 C 1.46901 * 110.99793 * 293.95574 * 9 8 7 11 11 C 1.46898 * 110.99820 * 169.99890 * 9 8 7 12 12 H 1.08994 * 109.47410 * 309.99936 * 11 9 8 13 13 C 1.53001 * 109.46948 * 70.00145 * 11 9 8 14 14 C 1.50706 * 109.46563 * 189.99919 * 11 9 8 15 15 H 1.07998 * 120.00168 * 359.97438 * 14 11 9 16 16 C 1.37880 * 119.99248 * 180.02562 * 14 11 9 17 17 N 1.31524 * 119.99474 * 180.02562 * 16 14 11 18 18 Si 1.86801 * 120.00536 * 0.02562 * 16 14 11 19 19 H 1.48501 * 109.46849 * 89.99746 * 18 16 14 20 20 H 1.48499 * 109.47055 * 210.00004 * 18 16 14 21 21 H 1.48495 * 109.46765 * 330.00048 * 18 16 14 22 22 H 1.08993 * 109.47389 * 270.22623 * 1 2 3 23 23 H 1.08999 * 109.46751 * 30.22667 * 1 2 3 24 24 H 1.08998 * 109.46963 * 150.22391 * 1 2 3 25 25 H 1.08996 * 109.46968 * 270.03073 * 6 5 4 26 26 H 1.09006 * 109.47215 * 30.02699 * 6 5 4 27 27 H 1.09000 * 109.46774 * 150.02806 * 6 5 4 28 28 H 1.08997 * 109.47055 * 329.99623 * 8 7 5 29 29 H 1.09001 * 109.47156 * 209.99392 * 8 7 5 30 30 H 1.09002 * 109.47401 * 59.99808 * 10 9 8 31 31 H 1.09001 * 109.46874 * 299.99821 * 10 9 8 32 32 H 1.09004 * 109.46970 * 179.97438 * 10 9 8 33 33 H 1.09007 * 109.46628 * 179.97438 * 13 11 9 34 34 H 1.08991 * 109.47344 * 299.99707 * 13 11 9 35 35 H 1.09002 * 109.47146 * 59.99940 * 13 11 9 36 36 H 0.96999 * 119.99619 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1878 1.1084 0.0000 4 16 3.8305 0.6864 -0.0065 5 6 3.5701 -1.0143 -0.0017 6 6 4.6179 -2.0975 -0.0046 7 6 2.2283 -1.1743 0.0042 8 6 1.5719 -2.5308 0.0093 9 7 1.3644 -2.9692 1.3960 10 6 2.6477 -3.1993 2.0729 11 6 0.5192 -4.1695 1.4476 12 1 -0.3773 -4.0087 0.8490 13 6 1.2961 -5.3646 0.8917 14 6 0.1265 -4.4461 2.8761 15 1 0.4707 -3.7956 3.6664 16 6 -0.6715 -5.5304 3.1740 17 7 -1.0146 -5.7716 4.4205 18 14 -1.2651 -6.6569 1.8072 19 1 -0.2815 -7.7509 1.6051 20 1 -2.5806 -7.2364 2.1797 21 1 -1.4051 -5.8787 0.5502 22 1 -0.3634 0.0041 1.0276 23 1 -0.3633 0.8880 -0.5174 24 1 -0.3633 -0.8920 -0.5103 25 1 4.8658 -2.3603 -1.0329 26 1 5.5126 -1.7389 0.5045 27 1 4.2332 -2.9764 0.5126 28 1 2.2126 -3.2463 -0.5060 29 1 0.6104 -2.4711 -0.5006 30 1 3.2250 -2.2747 2.0813 31 1 3.2052 -3.9710 1.5421 32 1 2.4650 -3.5225 3.0978 33 1 0.6690 -6.2554 0.9305 34 1 1.5802 -5.1646 -0.1414 35 1 2.1927 -5.5255 1.4904 36 1 -1.5763 -6.5341 4.6300 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581862524.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:13 Heat of formation + Delta-G solvation = 50.475545 kcal Electronic energy + Delta-G solvation = -17368.179875 eV Core-core repulsion = 14786.529558 eV Total energy + Delta-G solvation = -2581.650317 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.67098 -37.12894 -33.59391 -32.35123 -30.37668 -29.23771 -28.40530 -25.91561 -25.31540 -23.63652 -21.43750 -19.53076 -18.26511 -17.76059 -16.67645 -15.63251 -15.12965 -14.46921 -14.26779 -14.04036 -13.57347 -13.33099 -13.14271 -12.86910 -12.48120 -12.29373 -12.19131 -11.98470 -11.94878 -11.56264 -11.20255 -11.14839 -10.92672 -10.69231 -10.34758 -10.19503 -10.02850 -9.58838 -9.13772 -9.07061 -8.61497 -8.32269 -7.38247 -6.09061 -4.07349 0.85766 1.64257 2.02969 2.59804 3.22376 3.32106 3.35670 4.36269 4.62212 4.87237 5.00266 5.17014 5.23208 5.34816 5.43087 5.49738 5.66130 5.74088 5.84596 5.91236 5.98416 6.05103 6.11135 6.15265 6.21755 6.26306 6.38296 6.48679 6.64732 6.82919 6.91974 7.12221 7.58499 7.87684 8.00132 8.62405 8.99448 9.52669 11.04062 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.033660 B = 0.006080 C = 0.005748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.646105 B = 4604.190561 C = 4870.244967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.145 3.855 3 N -0.470 5.470 4 S 0.211 5.789 5 C -0.162 4.162 6 C -0.092 4.092 7 C -0.149 4.149 8 C 0.113 3.887 9 N -0.515 5.515 10 C 0.029 3.971 11 C 0.182 3.818 12 H 0.040 0.960 13 C -0.188 4.188 14 C -0.501 4.501 15 H 0.082 0.918 16 C 0.070 3.930 17 N -0.899 5.899 18 Si 0.886 3.114 19 H -0.281 1.281 20 H -0.297 1.297 21 H -0.268 1.268 22 H 0.091 0.909 23 H 0.071 0.929 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.038 0.962 29 H 0.081 0.919 30 H 0.049 0.951 31 H 0.019 0.981 32 H 0.080 0.920 33 H 0.045 0.955 34 H 0.028 0.972 35 H 0.057 0.943 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.679 7.265 -10.983 15.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.033 4.033 3 N -0.291 5.291 4 S 0.366 5.634 5 C -0.292 4.292 6 C -0.151 4.151 7 C -0.165 4.165 8 C -0.017 4.017 9 N -0.238 5.238 10 C -0.119 4.119 11 C 0.074 3.926 12 H 0.058 0.942 13 C -0.246 4.246 14 C -0.539 4.539 15 H 0.100 0.900 16 C -0.132 4.132 17 N -0.537 5.537 18 Si 0.716 3.284 19 H -0.209 1.209 20 H -0.224 1.224 21 H -0.193 1.193 22 H 0.110 0.890 23 H 0.090 0.910 24 H 0.101 0.899 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.112 0.888 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.038 0.962 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.076 0.924 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.222 9.616 -10.606 17.029 hybrid contribution -0.719 -3.045 -1.023 3.292 sum 8.503 6.571 -11.629 15.834 Atomic orbital electron populations 1.20595 0.86361 1.03100 1.04396 1.21327 0.99113 0.87798 0.95107 1.76731 0.99505 1.26102 1.26748 1.83781 1.12072 0.97325 1.70196 1.25157 0.98218 1.01195 1.04664 1.20610 0.95302 0.96025 1.03154 1.19873 0.91799 0.97781 1.07077 1.20701 0.99068 0.89543 0.92432 1.62149 1.14884 1.35356 1.11424 1.22488 0.90498 0.98182 1.00746 1.19810 0.91127 0.83394 0.98246 0.94209 1.22845 1.01872 1.01609 0.98291 1.20913 1.30632 1.11341 0.90995 0.90006 1.24919 0.95760 0.97361 0.95164 1.69882 1.37068 1.29204 1.17594 0.86900 0.77307 0.81290 0.82867 1.20853 1.22427 1.19336 0.89038 0.91047 0.89879 0.90443 0.90786 0.88849 0.94399 0.90078 0.93240 0.96232 0.90174 0.93640 0.95337 0.92426 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 9.94 36.01 0.36 -0.76 16 2 C 0.14 2.24 6.72 -83.49 -0.56 1.68 16 3 N -0.47 -7.50 12.05 32.03 0.39 -7.12 16 4 S 0.21 2.87 23.72 -107.50 -2.55 0.32 16 5 C -0.16 -2.22 5.53 -35.41 -0.20 -2.41 16 6 C -0.09 -1.01 9.29 36.01 0.33 -0.68 16 7 C -0.15 -2.27 4.80 -105.88 -0.51 -2.78 16 8 C 0.11 1.82 4.21 -4.97 -0.02 1.80 16 9 N -0.52 -9.99 4.69 -237.72 -1.12 -11.11 16 10 C 0.03 0.52 7.07 60.07 0.42 0.95 16 11 C 0.18 4.04 1.90 -68.86 -0.13 3.91 16 12 H 0.04 0.91 6.99 -51.93 -0.36 0.55 16 13 C -0.19 -3.84 7.92 37.16 0.29 -3.55 16 14 C -0.50 -13.46 8.49 -34.44 -0.29 -13.75 16 15 H 0.08 2.43 7.37 -52.49 -0.39 2.05 16 16 C 0.07 1.94 5.45 -17.81 -0.10 1.84 16 17 N -0.90 -26.86 13.96 55.43 0.77 -26.09 16 18 Si 0.89 21.23 24.37 -169.99 -4.14 17.09 16 19 H -0.28 -6.61 6.87 56.52 0.39 -6.22 16 20 H -0.30 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.27 -6.10 6.53 56.52 0.37 -5.73 16 22 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 23 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.08 1.04 6.35 -51.93 -0.33 0.71 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.09 1.12 4.22 -51.93 -0.22 0.90 16 28 H 0.04 0.58 6.39 -51.93 -0.33 0.25 16 29 H 0.08 1.25 6.16 -51.93 -0.32 0.93 16 30 H 0.05 0.82 5.65 -51.93 -0.29 0.53 16 31 H 0.02 0.33 5.11 -51.93 -0.27 0.06 16 32 H 0.08 1.65 6.76 -51.93 -0.35 1.30 16 33 H 0.05 0.99 3.27 -51.92 -0.17 0.82 16 34 H 0.03 0.50 6.91 -51.93 -0.36 0.14 16 35 H 0.06 1.16 6.42 -51.93 -0.33 0.82 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 283.09 15.07 4.27 4.27 Total: -1.00 -29.76 283.09 -7.37 -37.13 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -4.59 Total: -0.75 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -0.39 Total: -13.74 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.04 Total: -44.32 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.14 Total: 17.09 kcal Atomic # 16 Polarization: 2.87 SS G_CDS: -2.55 Total: 0.32 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.76 -7.37 -37.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581862524.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.605 kcal (2) G-P(sol) polarization free energy of solvation -29.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds