Wall clock time and date at job start Mon Mar 30 2020 07:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30080 * 121.55998 * 2 1 4 4 S 1.69602 * 107.15250 * 180.22989 * 3 2 1 5 5 C 1.72052 * 95.70220 * 359.74817 * 4 3 2 6 6 C 1.50701 * 127.24625 * 179.97438 * 5 4 3 7 7 C 1.35136 * 105.50422 * 0.02562 * 5 4 3 8 8 C 1.50696 * 122.62023 * 179.97438 * 7 5 4 9 9 N 1.46906 * 109.47351 * 89.99567 * 8 7 5 10 10 C 1.46901 * 110.99793 * 293.95574 * 9 8 7 11 11 C 1.46898 * 110.99820 * 169.99890 * 9 8 7 12 12 H 1.08994 * 109.47410 * 309.99936 * 11 9 8 13 13 C 1.53001 * 109.46948 * 70.00145 * 11 9 8 14 14 C 1.50706 * 109.46563 * 189.99919 * 11 9 8 15 15 H 1.07998 * 120.00168 * 359.97438 * 14 11 9 16 16 C 1.37880 * 119.99248 * 180.02562 * 14 11 9 17 17 N 1.31524 * 119.99474 * 180.02562 * 16 14 11 18 18 Si 1.86801 * 120.00536 * 0.02562 * 16 14 11 19 19 H 1.48501 * 109.46849 * 89.99746 * 18 16 14 20 20 H 1.48499 * 109.47055 * 210.00004 * 18 16 14 21 21 H 1.48495 * 109.46765 * 330.00048 * 18 16 14 22 22 H 1.08993 * 109.47389 * 270.22623 * 1 2 3 23 23 H 1.08999 * 109.46751 * 30.22667 * 1 2 3 24 24 H 1.08998 * 109.46963 * 150.22391 * 1 2 3 25 25 H 1.08996 * 109.46968 * 270.03073 * 6 5 4 26 26 H 1.09006 * 109.47215 * 30.02699 * 6 5 4 27 27 H 1.09000 * 109.46774 * 150.02806 * 6 5 4 28 28 H 1.08997 * 109.47055 * 329.99623 * 8 7 5 29 29 H 1.09001 * 109.47156 * 209.99392 * 8 7 5 30 30 H 1.09002 * 109.47401 * 59.99808 * 10 9 8 31 31 H 1.09001 * 109.46874 * 299.99821 * 10 9 8 32 32 H 1.09004 * 109.46970 * 179.97438 * 10 9 8 33 33 H 1.09007 * 109.46628 * 179.97438 * 13 11 9 34 34 H 1.08991 * 109.47344 * 299.99707 * 13 11 9 35 35 H 1.09002 * 109.47146 * 59.99940 * 13 11 9 36 36 H 0.96999 * 119.99619 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1878 1.1084 0.0000 4 16 3.8305 0.6864 -0.0065 5 6 3.5701 -1.0143 -0.0017 6 6 4.6179 -2.0975 -0.0046 7 6 2.2283 -1.1743 0.0042 8 6 1.5719 -2.5308 0.0093 9 7 1.3644 -2.9692 1.3960 10 6 2.6477 -3.1993 2.0729 11 6 0.5192 -4.1695 1.4476 12 1 -0.3773 -4.0087 0.8490 13 6 1.2961 -5.3646 0.8917 14 6 0.1265 -4.4461 2.8761 15 1 0.4707 -3.7956 3.6664 16 6 -0.6715 -5.5304 3.1740 17 7 -1.0146 -5.7716 4.4205 18 14 -1.2651 -6.6569 1.8072 19 1 -0.2815 -7.7509 1.6051 20 1 -2.5806 -7.2364 2.1797 21 1 -1.4051 -5.8787 0.5502 22 1 -0.3634 0.0041 1.0276 23 1 -0.3633 0.8880 -0.5174 24 1 -0.3633 -0.8920 -0.5103 25 1 4.8658 -2.3603 -1.0329 26 1 5.5126 -1.7389 0.5045 27 1 4.2332 -2.9764 0.5126 28 1 2.2126 -3.2463 -0.5060 29 1 0.6104 -2.4711 -0.5006 30 1 3.2250 -2.2747 2.0813 31 1 3.2052 -3.9710 1.5421 32 1 2.4650 -3.5225 3.0978 33 1 0.6690 -6.2554 0.9305 34 1 1.5802 -5.1646 -0.1414 35 1 2.1927 -5.5255 1.4904 36 1 -1.5763 -6.5341 4.6300 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581862524.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:13 Heat of formation + Delta-G solvation = 29.834100 kcal Electronic energy + Delta-G solvation = -17369.074955 eV Core-core repulsion = 14786.529558 eV Total energy + Delta-G solvation = -2582.545397 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.85485 -38.62009 -35.04829 -34.01709 -31.82087 -30.62173 -29.50639 -27.30623 -27.05082 -25.15652 -22.57773 -21.20420 -19.40904 -18.91586 -18.60243 -17.23747 -16.55675 -15.86801 -15.65920 -15.45360 -14.87187 -14.74749 -14.26089 -14.12411 -14.01051 -13.85229 -13.40786 -13.17158 -13.11779 -12.99477 -12.75335 -12.62222 -12.37121 -12.15482 -11.80660 -11.71864 -11.41481 -11.32802 -11.04739 -10.72072 -10.19655 -9.44132 -8.85152 -8.22974 -6.25398 -0.24104 0.56852 0.92760 1.33659 1.39629 1.44210 1.49586 2.36096 3.11838 3.42922 3.60754 3.87159 4.12204 4.30701 4.41144 4.45016 4.52771 4.58595 4.61468 4.64035 4.67775 4.71865 4.82272 4.84125 4.87530 5.00873 5.06645 5.12969 5.27858 5.33077 5.47467 5.67519 5.80602 6.08195 6.43348 6.74009 6.81748 7.39234 8.94110 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.033660 B = 0.006080 C = 0.005748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.646105 B = 4604.190561 C = 4870.244967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.135 3.865 3 N -0.503 5.503 4 S 0.237 5.763 5 C -0.152 4.152 6 C -0.094 4.094 7 C -0.172 4.172 8 C 0.120 3.880 9 N -0.533 5.533 10 C 0.039 3.961 11 C 0.186 3.814 12 H 0.040 0.960 13 C -0.183 4.183 14 C -0.498 4.498 15 H 0.035 0.965 16 C 0.010 3.990 17 N -0.953 5.953 18 Si 0.950 3.050 19 H -0.270 1.270 20 H -0.303 1.303 21 H -0.242 1.242 22 H 0.078 0.922 23 H 0.084 0.916 24 H 0.092 0.908 25 H 0.101 0.899 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.055 0.945 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.039 0.961 32 H 0.042 0.958 33 H 0.035 0.965 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.953 6.926 -13.781 18.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.042 4.042 3 N -0.325 5.325 4 S 0.392 5.608 5 C -0.282 4.282 6 C -0.153 4.153 7 C -0.189 4.189 8 C -0.010 4.010 9 N -0.257 5.257 10 C -0.109 4.109 11 C 0.078 3.922 12 H 0.058 0.942 13 C -0.241 4.241 14 C -0.536 4.536 15 H 0.053 0.947 16 C -0.187 4.187 17 N -0.594 5.594 18 Si 0.777 3.223 19 H -0.196 1.196 20 H -0.232 1.232 21 H -0.166 1.166 22 H 0.097 0.903 23 H 0.103 0.897 24 H 0.110 0.890 25 H 0.119 0.881 26 H 0.110 0.890 27 H 0.104 0.896 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.515 9.300 -13.428 19.426 hybrid contribution -0.997 -2.797 -0.093 2.971 sum 9.518 6.503 -13.521 17.768 Atomic orbital electron populations 1.20616 0.85653 1.04221 1.03830 1.21580 0.99909 0.87888 0.94846 1.76642 1.00978 1.26881 1.27969 1.83660 1.10607 0.97072 1.69453 1.25587 0.98354 1.01970 1.02322 1.20750 0.95023 0.94687 1.04797 1.19842 0.92454 0.97261 1.09328 1.20670 0.99979 0.90191 0.90189 1.61986 1.15367 1.34133 1.14168 1.22372 0.90391 0.99383 0.98796 1.19583 0.92158 0.85561 0.94918 0.94247 1.22716 1.01236 0.99822 1.00347 1.21174 1.29709 1.10037 0.92726 0.94695 1.25781 0.96159 0.99273 0.97489 1.70054 1.38732 1.30335 1.20238 0.85850 0.76408 0.79472 0.80543 1.19635 1.23168 1.16613 0.90337 0.89746 0.88990 0.88080 0.88960 0.89591 0.92750 0.89478 0.91829 0.94240 0.93886 0.94653 0.91680 0.92548 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.12 9.94 71.24 0.71 -1.41 16 2 C 0.14 4.00 6.72 42.72 0.29 4.28 16 3 N -0.50 -15.43 12.05 -52.59 -0.63 -16.06 16 4 S 0.24 5.93 23.72 -56.49 -1.34 4.59 16 5 C -0.15 -3.71 5.53 24.97 0.14 -3.57 16 6 C -0.09 -1.70 9.29 71.24 0.66 -1.04 16 7 C -0.17 -4.87 4.80 -20.68 -0.10 -4.97 16 8 C 0.12 3.52 4.21 85.55 0.36 3.88 16 9 N -0.53 -19.99 4.69 -906.02 -4.25 -24.24 16 10 C 0.04 1.35 7.07 127.69 0.90 2.25 16 11 C 0.19 8.01 1.90 44.17 0.08 8.10 16 12 H 0.04 1.72 6.99 -2.39 -0.02 1.70 16 13 C -0.18 -6.90 7.92 71.98 0.57 -6.33 16 14 C -0.50 -27.35 8.49 25.60 0.22 -27.13 16 15 H 0.03 2.19 7.37 -2.91 -0.02 2.17 16 16 C 0.01 0.54 5.45 84.65 0.46 1.00 16 17 N -0.95 -58.87 13.96 21.45 0.30 -58.57 16 18 Si 0.95 43.26 24.37 68.60 1.67 44.93 16 19 H -0.27 -11.73 6.87 99.48 0.68 -11.05 16 20 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 21 H -0.24 -9.95 6.53 99.48 0.65 -9.30 16 22 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 23 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.09 2.16 6.35 -2.39 -0.02 2.15 16 25 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 27 H 0.09 1.73 4.22 -2.39 -0.01 1.72 16 28 H 0.05 1.42 6.39 -2.39 -0.02 1.41 16 29 H 0.09 2.44 6.16 -2.39 -0.01 2.42 16 30 H 0.06 2.01 5.65 -2.39 -0.01 2.00 16 31 H 0.04 1.22 5.11 -2.39 -0.01 1.20 16 32 H 0.04 1.81 6.76 -2.38 -0.02 1.79 16 33 H 0.03 1.41 3.27 -2.38 -0.01 1.40 16 34 H 0.06 1.98 6.91 -2.39 -0.02 1.97 16 35 H 0.06 2.12 6.42 -2.39 -0.02 2.11 16 36 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -65.63 283.09 1.05 -64.58 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 1.02 Total: 9.72 kcal Atomic # 6 Polarization: -29.24 SS G_CDS: 4.29 Total: -24.94 kcal Atomic # 7 Polarization: -94.29 SS G_CDS: -4.59 Total: -98.87 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.67 Total: 44.93 kcal Atomic # 16 Polarization: 5.93 SS G_CDS: -1.34 Total: 4.59 kcal Total: -65.63 1.05 -64.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581862524.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.410 kcal (2) G-P(sol) polarization free energy of solvation -65.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds