Wall clock time and date at job start Mon Mar 30 2020 07:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29023 * 124.91479 * 2 1 4 4 C 1.31788 * 117.12126 * 179.97438 * 3 2 1 5 5 C 1.50700 * 122.74914 * 180.02562 * 4 3 2 6 6 N 1.46501 * 109.46841 * 275.65931 * 5 4 3 7 7 C 1.36935 * 120.00576 * 84.60317 * 6 5 4 8 8 H 1.08004 * 120.00098 * 217.45440 * 7 6 5 9 9 C 1.38808 * 120.00104 * 37.44273 * 7 6 5 10 10 N 1.31621 * 120.00062 * 22.50476 * 9 7 6 11 11 Si 1.86800 * 120.00364 * 202.50347 * 9 7 6 12 12 H 1.48503 * 109.46709 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47153 * 119.99918 * 11 9 7 14 14 H 1.48501 * 109.47239 * 240.00327 * 11 9 7 15 15 C 1.46503 * 119.99670 * 264.59648 * 6 5 4 16 16 C 1.53002 * 109.47214 * 115.93306 * 15 6 5 17 17 C 1.53007 * 109.46988 * 235.93363 * 15 6 5 18 18 C 1.33638 * 114.49915 * 0.02562 * 4 3 2 19 19 C 1.50698 * 126.03642 * 179.97438 * 18 4 3 20 20 S 1.70979 * 124.91275 * 180.31310 * 2 1 3 21 21 H 1.09001 * 109.47213 * 90.00146 * 1 2 3 22 22 H 1.08999 * 109.47552 * 210.00192 * 1 2 3 23 23 H 1.09002 * 109.47241 * 330.00083 * 1 2 3 24 24 H 1.09004 * 109.47004 * 35.65085 * 5 4 3 25 25 H 1.08995 * 109.47349 * 155.65731 * 5 4 3 26 26 H 0.96999 * 120.00042 * 179.97438 * 10 9 7 27 27 H 1.08997 * 109.46978 * 355.93036 * 15 6 5 28 28 H 1.09000 * 109.46773 * 64.99741 * 16 15 6 29 29 H 1.08997 * 109.47231 * 184.99541 * 16 15 6 30 30 H 1.09001 * 109.46623 * 304.99755 * 16 15 6 31 31 H 1.08998 * 109.47403 * 63.40780 * 17 15 6 32 32 H 1.09001 * 109.46632 * 183.40880 * 17 15 6 33 33 H 1.08998 * 109.46992 * 303.40373 * 17 15 6 34 34 H 1.09001 * 109.47325 * 85.38466 * 19 18 4 35 35 H 1.09006 * 109.47307 * 325.39573 * 19 18 4 36 36 H 1.08994 * 109.47649 * 205.38827 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8793 0.0005 5 6 4.5308 2.0245 0.0012 6 7 4.7452 2.4843 -1.3732 7 6 3.8815 3.3854 -1.9364 8 1 3.6162 3.2995 -2.9799 9 6 3.3468 4.4090 -1.1664 10 7 3.9627 4.7987 -0.0704 11 14 1.7530 5.2336 -1.6854 12 1 1.2635 4.6163 -2.9442 13 1 0.7344 5.0571 -0.6194 14 1 1.9939 6.6824 -1.9051 15 6 5.8839 1.9802 -2.1449 16 6 5.3727 1.1820 -3.3460 17 6 6.7279 3.1578 -2.6370 18 6 3.9353 -0.4007 0.0004 19 6 5.3574 -0.8995 0.0004 20 16 2.4856 -1.4021 -0.0077 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 4.1321 2.8433 0.6001 25 1 5.4782 1.6920 0.4251 26 1 3.5892 5.5142 0.4676 27 1 6.4940 1.3350 -1.5129 28 1 4.8373 1.8475 -4.0231 29 1 6.2167 0.7331 -3.8696 30 1 4.7000 0.3969 -3.0006 31 1 7.1418 3.6910 -1.7812 32 1 7.5405 2.7865 -3.2615 33 1 6.1026 3.8348 -3.2191 34 1 5.7276 -0.9418 1.0247 35 1 5.9803 -0.2216 -0.5832 36 1 5.3930 -1.8958 -0.4402 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687797054.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:52 Heat of formation + Delta-G solvation = 34.769331 kcal Electronic energy + Delta-G solvation = -17605.620480 eV Core-core repulsion = 15023.289091 eV Total energy + Delta-G solvation = -2582.331389 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.73133 -38.06714 -34.39626 -34.22539 -31.68176 -30.97243 -28.35070 -27.75303 -26.14173 -24.96241 -23.11359 -21.37393 -19.70099 -18.76740 -17.95907 -16.76914 -16.30712 -15.88470 -15.63290 -15.24651 -14.64146 -14.39138 -14.12156 -14.10410 -13.80920 -13.46375 -13.20747 -13.18459 -12.98211 -12.89177 -12.85438 -12.64979 -12.40400 -12.23716 -11.83099 -11.73135 -11.70056 -11.27610 -10.46539 -10.25944 -9.95030 -9.27163 -8.51456 -7.76468 -5.35612 -0.03479 0.62007 0.91963 1.39425 1.45316 1.51159 2.09948 2.54804 3.33050 3.47155 3.77337 4.22127 4.25219 4.29928 4.38984 4.57975 4.61204 4.65272 4.66817 4.79939 4.90223 4.94713 5.02925 5.07771 5.15504 5.17992 5.18454 5.19285 5.50184 5.61551 5.67596 5.70480 5.83281 6.52635 7.20631 7.25141 7.93591 8.43545 9.18846 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.016947 B = 0.010749 C = 0.007582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.765214 B = 2604.230236 C = 3692.286210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.018 3.982 3 N -0.491 5.491 4 C 0.052 3.948 5 C 0.212 3.788 6 N -0.577 5.577 7 C -0.235 4.235 8 H 0.041 0.959 9 C -0.018 4.018 10 N -0.909 5.909 11 Si 0.937 3.063 12 H -0.277 1.277 13 H -0.296 1.296 14 H -0.291 1.291 15 C 0.156 3.844 16 C -0.141 4.141 17 C -0.136 4.136 18 C -0.235 4.235 19 C -0.068 4.068 20 S 0.114 5.886 21 H 0.089 0.911 22 H 0.107 0.893 23 H 0.075 0.925 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.247 0.753 27 H 0.067 0.933 28 H 0.031 0.969 29 H 0.072 0.928 30 H 0.032 0.968 31 H 0.031 0.969 32 H 0.068 0.932 33 H 0.033 0.967 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.043 -14.028 -0.096 14.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.260 4.260 3 N -0.206 5.206 4 C -0.081 4.081 5 C 0.082 3.918 6 N -0.297 5.297 7 C -0.366 4.366 8 H 0.058 0.942 9 C -0.215 4.215 10 N -0.554 5.554 11 Si 0.767 3.233 12 H -0.202 1.202 13 H -0.223 1.223 14 H -0.218 1.218 15 C 0.050 3.950 16 C -0.200 4.200 17 C -0.195 4.195 18 C -0.356 4.356 19 C -0.127 4.127 20 S 0.368 5.632 21 H 0.107 0.893 22 H 0.126 0.874 23 H 0.094 0.906 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.056 0.944 27 H 0.086 0.914 28 H 0.050 0.950 29 H 0.091 0.909 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.087 0.913 33 H 0.052 0.948 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.450 -14.436 -0.018 14.443 hybrid contribution -0.600 1.732 -0.141 1.838 sum -1.050 -12.704 -0.159 12.748 Atomic orbital electron populations 1.20507 0.83809 1.04609 1.04245 1.27559 1.02955 0.91021 1.04459 1.66143 1.06241 1.32772 1.15459 1.21480 0.90531 0.95874 1.00201 1.19409 0.92546 0.91563 0.88247 1.43947 1.27076 1.47102 1.11555 1.18730 1.19489 1.03527 0.94847 0.94183 1.25457 1.00885 0.96816 0.98382 1.70060 1.38150 1.29008 1.18145 0.85691 0.82419 0.77677 0.77469 1.20224 1.22268 1.21814 1.20720 0.87915 0.93806 0.92557 1.22037 1.00427 0.98873 0.98640 1.21941 0.98805 0.98864 0.99891 1.26010 1.01450 0.94882 1.13296 1.20307 0.87399 1.01600 1.03371 1.83037 0.97693 1.11830 1.70686 0.89286 0.87448 0.90618 0.91621 0.92531 0.94360 0.91449 0.95028 0.90913 0.94864 0.95019 0.91298 0.94772 0.89730 0.90787 0.89686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.89 10.46 71.24 0.75 -1.15 16 2 C 0.02 0.65 7.39 88.52 0.65 1.30 16 3 N -0.49 -22.39 10.53 -179.40 -1.89 -24.28 16 4 C 0.05 2.27 6.29 41.52 0.26 2.53 16 5 C 0.21 10.19 5.43 85.63 0.47 10.66 16 6 N -0.58 -28.32 2.36 -682.32 -1.61 -29.93 16 7 C -0.24 -13.07 7.98 84.03 0.67 -12.40 16 8 H 0.04 2.32 7.15 -2.91 -0.02 2.30 16 9 C -0.02 -1.02 4.98 84.86 0.42 -0.60 16 10 N -0.91 -54.28 11.47 21.65 0.25 -54.03 16 11 Si 0.94 47.75 29.61 68.60 2.03 49.78 16 12 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 13 H -0.30 -15.33 7.11 99.48 0.71 -14.62 16 14 H -0.29 -14.52 7.11 99.48 0.71 -13.82 16 15 C 0.16 6.24 3.25 44.99 0.15 6.38 16 16 C -0.14 -5.11 9.15 71.98 0.66 -4.45 16 17 C -0.14 -5.35 9.16 71.98 0.66 -4.69 16 18 C -0.23 -8.18 6.59 24.64 0.16 -8.02 16 19 C -0.07 -1.80 9.68 71.24 0.69 -1.11 16 20 S 0.11 3.35 23.18 -56.49 -1.31 2.04 16 21 H 0.09 2.17 8.14 -2.39 -0.02 2.16 16 22 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 23 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 24 H 0.07 3.77 5.53 -2.38 -0.01 3.76 16 25 H 0.06 2.46 6.81 -2.39 -0.02 2.44 16 26 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 27 H 0.07 2.41 5.83 -2.39 -0.01 2.40 16 28 H 0.03 1.25 7.35 -2.39 -0.02 1.23 16 29 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.03 1.49 7.46 -2.39 -0.02 1.47 16 34 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.07 2.08 5.52 -2.38 -0.01 2.07 16 36 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -67.52 306.06 4.07 -63.46 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: 1.06 Total: 4.50 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: 5.53 Total: -11.53 kcal Atomic # 7 Polarization: -104.99 SS G_CDS: -3.25 Total: -108.24 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.78 kcal Atomic # 16 Polarization: 3.35 SS G_CDS: -1.31 Total: 2.04 kcal Total: -67.52 4.07 -63.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687797054.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.225 kcal (2) G-P(sol) polarization free energy of solvation -67.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds