Wall clock time and date at job start Mon Mar 30 2020 06:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.08998 * 109.47192 * 305.00392 * 3 2 1 5 5 C 1.50695 * 109.46942 * 185.00287 * 3 2 1 6 6 H 1.08006 * 119.99867 * 239.99721 * 5 3 2 7 7 C 1.37878 * 120.00430 * 60.00421 * 5 3 2 8 8 N 1.31510 * 119.99542 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00289 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47022 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47458 * 119.99529 * 9 7 5 12 12 H 1.48500 * 109.47184 * 239.99584 * 9 7 5 13 13 N 1.46500 * 109.47170 * 65.00312 * 3 2 1 14 14 C 1.39703 * 119.99868 * 275.00110 * 13 3 2 15 15 C 1.38945 * 120.49032 * 359.71800 * 14 13 3 16 16 N 1.31778 * 120.68427 * 179.77455 * 15 14 13 17 17 C 1.31873 * 121.81887 * 0.49337 * 16 15 14 18 18 C 1.38361 * 120.90266 * 359.76980 * 17 16 15 19 19 Cl 1.73608 * 120.38654 * 179.97438 * 18 17 16 20 20 C 1.38643 * 119.22278 * 359.97438 * 18 17 16 21 21 C 1.50701 * 120.82869 * 180.02562 * 20 18 17 22 22 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 23 23 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 26 26 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 27 27 H 0.97002 * 120.00324 * 180.02562 * 8 7 5 28 28 H 0.96996 * 120.00116 * 94.99625 * 13 3 2 29 29 H 1.07997 * 119.65199 * 0.02562 * 15 14 13 30 30 H 1.07996 * 119.55300 * 179.75002 * 17 16 15 31 31 H 1.08998 * 109.46673 * 269.97348 * 21 20 18 32 32 H 1.09003 * 109.46758 * 29.97608 * 21 20 18 33 33 H 1.08995 * 109.47096 * 149.97287 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5419 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8784 -1.2281 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8800 -1.3813 10 1 6.5988 1.5451 -0.1937 11 1 6.4962 -0.5190 -1.4628 12 1 6.4000 1.6156 -2.6093 13 7 1.6526 2.0974 1.2518 14 6 0.3908 2.6850 1.3712 15 6 -0.5025 2.6593 0.3072 16 7 -1.6953 3.2085 0.4172 17 6 -2.0853 3.8079 1.5252 18 6 -1.2505 3.8792 2.6262 19 17 -1.7774 4.6722 4.0779 20 6 0.0118 3.3101 2.5565 21 6 0.9504 3.3662 3.7342 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 3.8292 -0.0617 -2.9496 28 1 2.2720 2.1231 1.9978 29 1 -0.2176 2.1807 -0.6180 30 1 -3.0697 4.2494 1.5738 31 1 1.5587 4.2685 3.6713 32 1 0.3729 3.3809 4.6586 33 1 1.5983 2.4898 3.7245 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690368923.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:39 Heat of formation + Delta-G solvation = 19.614467 kcal Electronic energy + Delta-G solvation = -16811.095180 eV Core-core repulsion = 14090.229825 eV Total energy + Delta-G solvation = -2720.865354 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.07298 -36.77781 -36.16078 -33.90636 -32.49195 -30.84710 -29.44784 -27.61821 -26.34371 -23.34354 -22.55114 -21.62612 -19.74762 -17.61119 -16.48255 -16.05734 -15.55843 -14.88325 -14.61350 -14.33386 -13.97964 -13.27653 -12.78480 -12.60716 -12.56899 -12.30119 -11.90982 -11.70537 -11.46676 -11.42906 -11.02819 -11.02247 -10.86834 -10.52711 -10.27555 -9.92803 -9.68414 -9.25498 -9.04565 -8.73615 -8.54959 -6.79893 -6.27158 -4.36221 1.42714 1.82880 2.28070 3.15925 3.24852 3.27158 4.09877 4.19943 4.34306 5.01354 5.04921 5.05855 5.10980 5.51204 5.61197 5.76153 5.83127 6.08812 6.11392 6.19113 6.32785 6.36610 6.48112 6.73437 6.80941 6.96519 7.07889 7.30251 7.54477 7.66512 7.90747 8.11373 8.33793 8.52165 8.73310 9.31401 10.78370 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.033816 B = 0.005695 C = 0.005192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.802447 B = 4915.530859 C = 5391.832814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.133 4.133 3 C 0.269 3.731 4 H 0.043 0.957 5 C -0.533 4.533 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.883 5.883 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.706 5.706 14 C 0.204 3.796 15 C 0.027 3.973 16 N -0.435 5.435 17 C 0.019 3.981 18 C -0.036 4.036 19 Cl -0.076 7.076 20 C -0.148 4.148 21 C -0.104 4.104 22 H 0.042 0.958 23 H 0.050 0.950 24 H 0.034 0.966 25 H 0.036 0.964 26 H 0.103 0.897 27 H 0.266 0.734 28 H 0.393 0.607 29 H 0.170 0.830 30 H 0.150 0.850 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.029 4.060 8.408 11.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.172 4.172 3 C 0.167 3.833 4 H 0.061 0.939 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.520 5.520 9 Si 0.730 3.270 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.328 5.328 14 C 0.090 3.910 15 C -0.138 4.138 16 N -0.144 5.144 17 C -0.140 4.140 18 C -0.065 4.065 19 Cl -0.048 7.048 20 C -0.162 4.162 21 C -0.160 4.160 22 H 0.061 0.939 23 H 0.069 0.931 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.121 0.879 27 H 0.076 0.924 28 H 0.229 0.771 29 H 0.187 0.813 30 H 0.167 0.833 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.523 3.880 7.446 10.633 hybrid contribution 1.723 0.023 0.994 1.990 sum -4.800 3.903 8.440 10.465 Atomic orbital electron populations 1.22196 0.98917 0.99676 1.00304 1.22051 0.92137 1.00086 1.02952 1.18897 0.95048 0.88931 0.80456 0.93903 1.21183 0.90406 1.39142 1.06420 0.91965 1.24863 0.98811 0.94563 0.95277 1.69859 1.35244 1.37501 1.09401 0.86376 0.84592 0.77869 0.78211 1.19741 1.20787 1.20771 1.45692 1.11318 1.57472 1.18285 1.18823 0.88383 0.91102 0.92730 1.22917 0.89369 1.02155 0.99358 1.67602 1.16179 1.06597 1.23994 1.22159 1.00119 1.03403 0.88320 1.21641 0.95317 1.00406 0.89140 1.98320 1.90226 1.78867 1.37370 1.19506 0.95345 1.04826 0.96507 1.20569 0.98014 1.02313 0.95147 0.93906 0.93069 0.94705 0.94467 0.87874 0.92422 0.77145 0.81283 0.83272 0.91172 0.91117 0.91541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.23 37.16 0.31 -2.64 16 2 C -0.13 -2.90 5.45 -26.73 -0.15 -3.05 16 3 C 0.27 6.04 2.20 -69.09 -0.15 5.88 16 4 H 0.04 1.06 6.50 -51.93 -0.34 0.72 16 5 C -0.53 -13.18 8.73 -34.44 -0.30 -13.48 16 6 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 7 C 0.07 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.88 -23.04 11.29 55.43 0.63 -22.41 16 9 Si 0.90 19.77 29.54 -169.99 -5.02 14.75 16 10 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 N -0.71 -13.56 5.10 -53.18 -0.27 -13.83 16 14 C 0.20 3.72 5.47 -83.63 -0.46 3.26 16 15 C 0.03 0.51 7.93 -17.31 -0.14 0.37 16 16 N -0.44 -7.90 10.35 -13.05 -0.14 -8.04 16 17 C 0.02 0.30 10.98 -17.49 -0.19 0.11 16 18 C -0.04 -0.55 6.34 -39.39 -0.25 -0.80 16 19 Cl -0.08 -0.99 27.47 -51.86 -1.42 -2.42 16 20 C -0.15 -2.41 5.94 -104.09 -0.62 -3.03 16 21 C -0.10 -1.40 9.27 36.01 0.33 -1.06 16 22 H 0.04 0.81 5.40 -51.93 -0.28 0.53 16 23 H 0.05 0.98 6.38 -51.93 -0.33 0.64 16 24 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.10 2.52 5.95 -51.93 -0.31 2.21 16 27 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 28 H 0.39 7.06 6.68 -40.82 -0.27 6.78 16 29 H 0.17 3.34 4.05 -52.49 -0.21 3.13 16 30 H 0.15 2.02 8.06 -52.49 -0.42 1.60 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.87 7.03 -51.93 -0.36 0.50 16 33 H 0.07 0.87 6.67 -51.93 -0.35 0.52 16 LS Contribution 278.07 15.07 4.19 4.19 Total: -1.00 -25.18 278.07 -7.43 -32.61 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -3.69 Total: 7.98 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -1.71 Total: -12.82 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: 0.22 Total: -44.29 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.42 Total: -2.42 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -25.18 -7.43 -32.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690368923.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.221 kcal (2) G-P(sol) polarization free energy of solvation -25.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds