Wall clock time and date at job start Mon Mar 30 2020 06:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.08998 * 109.47192 * 305.00392 * 3 2 1 5 5 C 1.50695 * 109.46942 * 185.00287 * 3 2 1 6 6 H 1.08006 * 119.99867 * 239.99721 * 5 3 2 7 7 C 1.37878 * 120.00430 * 60.00421 * 5 3 2 8 8 N 1.31510 * 119.99542 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00289 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47022 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47458 * 119.99529 * 9 7 5 12 12 H 1.48500 * 109.47184 * 239.99584 * 9 7 5 13 13 N 1.46500 * 109.47170 * 65.00312 * 3 2 1 14 14 C 1.39703 * 119.99868 * 275.00110 * 13 3 2 15 15 C 1.38945 * 120.49032 * 359.71800 * 14 13 3 16 16 N 1.31778 * 120.68427 * 179.77455 * 15 14 13 17 17 C 1.31873 * 121.81887 * 0.49337 * 16 15 14 18 18 C 1.38361 * 120.90266 * 359.76980 * 17 16 15 19 19 Cl 1.73608 * 120.38654 * 179.97438 * 18 17 16 20 20 C 1.38643 * 119.22278 * 359.97438 * 18 17 16 21 21 C 1.50701 * 120.82869 * 180.02562 * 20 18 17 22 22 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 23 23 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 26 26 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 27 27 H 0.97002 * 120.00324 * 180.02562 * 8 7 5 28 28 H 0.96996 * 120.00116 * 94.99625 * 13 3 2 29 29 H 1.07997 * 119.65199 * 0.02562 * 15 14 13 30 30 H 1.07996 * 119.55300 * 179.75002 * 17 16 15 31 31 H 1.08998 * 109.46673 * 269.97348 * 21 20 18 32 32 H 1.09003 * 109.46758 * 29.97608 * 21 20 18 33 33 H 1.08995 * 109.47096 * 149.97287 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5419 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8784 -1.2281 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8800 -1.3813 10 1 6.5988 1.5451 -0.1937 11 1 6.4962 -0.5190 -1.4628 12 1 6.4000 1.6156 -2.6093 13 7 1.6526 2.0974 1.2518 14 6 0.3908 2.6850 1.3712 15 6 -0.5025 2.6593 0.3072 16 7 -1.6953 3.2085 0.4172 17 6 -2.0853 3.8079 1.5252 18 6 -1.2505 3.8792 2.6262 19 17 -1.7774 4.6722 4.0779 20 6 0.0118 3.3101 2.5565 21 6 0.9504 3.3662 3.7342 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 3.8292 -0.0617 -2.9496 28 1 2.2720 2.1231 1.9978 29 1 -0.2176 2.1807 -0.6180 30 1 -3.0697 4.2494 1.5738 31 1 1.5587 4.2685 3.6713 32 1 0.3729 3.3809 4.6586 33 1 1.5983 2.4898 3.7245 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690368923.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:39 Heat of formation + Delta-G solvation = 5.936227 kcal Electronic energy + Delta-G solvation = -16811.688313 eV Core-core repulsion = 14090.229825 eV Total energy + Delta-G solvation = -2721.458487 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.44114 -38.23788 -37.44663 -35.38450 -34.16067 -32.41176 -30.92341 -28.94853 -27.96851 -25.06075 -24.01737 -22.96023 -21.39572 -19.21849 -17.90560 -17.69555 -16.97021 -16.56620 -16.04690 -15.72783 -15.51618 -14.73104 -14.43277 -13.87208 -13.78239 -13.65460 -13.51233 -13.19076 -12.99961 -12.86050 -12.72628 -12.49773 -12.13542 -12.08509 -12.00642 -11.61312 -11.32084 -10.96939 -10.53510 -10.41226 -9.94913 -8.28378 -8.16825 -6.33057 0.09757 0.48661 1.06943 1.42202 1.45571 1.55037 2.36566 2.76776 2.84081 3.12389 3.72062 3.80199 3.83498 4.20708 4.28419 4.46082 4.53943 4.69279 4.70676 4.72172 4.87720 4.98490 5.16768 5.17871 5.22466 5.35727 5.51684 5.58596 5.69620 5.86183 6.12522 6.42370 6.74426 6.95919 7.15399 7.38403 8.86692 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.033816 B = 0.005695 C = 0.005192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.802447 B = 4915.530859 C = 5391.832814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.125 4.125 3 C 0.279 3.721 4 H 0.014 0.986 5 C -0.546 4.546 6 H 0.063 0.937 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.962 3.038 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.283 1.283 13 N -0.709 5.709 14 C 0.187 3.813 15 C 0.010 3.990 16 N -0.452 5.452 17 C 0.025 3.975 18 C -0.039 4.039 19 Cl -0.046 7.046 20 C -0.140 4.140 21 C -0.104 4.104 22 H 0.046 0.954 23 H 0.046 0.954 24 H 0.047 0.953 25 H 0.034 0.966 26 H 0.075 0.925 27 H 0.266 0.734 28 H 0.399 0.601 29 H 0.152 0.848 30 H 0.177 0.823 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.352 4.894 10.264 13.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.164 4.164 3 C 0.176 3.824 4 H 0.032 0.968 5 C -0.585 4.585 6 H 0.081 0.919 7 C -0.178 4.178 8 N -0.547 5.547 9 Si 0.787 3.213 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.209 1.209 13 N -0.333 5.333 14 C 0.076 3.924 15 C -0.153 4.153 16 N -0.161 5.161 17 C -0.135 4.135 18 C -0.069 4.069 19 Cl -0.018 7.018 20 C -0.153 4.153 21 C -0.160 4.160 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.053 0.947 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.236 0.764 29 H 0.169 0.831 30 H 0.194 0.806 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.857 4.725 9.319 12.498 hybrid contribution 1.688 -0.123 0.521 1.771 sum -5.169 4.602 9.840 12.030 Atomic orbital electron populations 1.22038 0.96933 1.00464 1.00255 1.21869 0.93827 0.99379 1.01326 1.18514 0.93791 0.89075 0.81064 0.96792 1.21519 0.91764 1.38767 1.06401 0.91911 1.25591 1.02604 0.94423 0.95140 1.69982 1.36685 1.38256 1.09820 0.85450 0.80038 0.77732 0.78039 1.19127 1.20587 1.20914 1.45301 1.12120 1.58513 1.17363 1.18857 0.87901 0.92117 0.93574 1.22685 0.90166 1.03290 0.99182 1.67588 1.15949 1.07308 1.25267 1.22658 1.01109 1.02001 0.87743 1.21705 0.94905 1.00047 0.90212 1.98333 1.89876 1.78116 1.35429 1.19836 0.96006 1.03061 0.96414 1.20658 0.97859 1.03016 0.94481 0.93545 0.93548 0.93349 0.94718 0.90628 0.92498 0.76436 0.83123 0.80625 0.90076 0.89541 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.42 8.23 71.98 0.59 -4.82 16 2 C -0.12 -5.57 5.45 30.60 0.17 -5.40 16 3 C 0.28 12.85 2.20 44.24 0.10 12.95 16 4 H 0.01 0.74 6.50 -2.39 -0.02 0.72 16 5 C -0.55 -27.36 8.73 25.60 0.22 -27.13 16 6 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 7 C 0.02 1.18 5.29 84.66 0.45 1.63 16 8 N -0.91 -48.62 11.29 21.45 0.24 -48.38 16 9 Si 0.96 40.71 29.54 68.60 2.03 42.74 16 10 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 11 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 12 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 13 N -0.71 -27.28 5.10 -322.18 -1.64 -28.92 16 14 C 0.19 6.75 5.47 38.30 0.21 6.96 16 15 C 0.01 0.38 7.93 84.87 0.67 1.05 16 16 N -0.45 -16.12 10.35 -195.20 -2.02 -18.14 16 17 C 0.02 0.74 10.98 84.72 0.93 1.67 16 18 C -0.04 -1.11 6.34 22.40 0.14 -0.97 16 19 Cl -0.05 -1.05 27.47 -2.72 -0.07 -1.12 16 20 C -0.14 -4.27 5.94 -19.52 -0.12 -4.38 16 21 C -0.10 -2.52 9.27 71.24 0.66 -1.86 16 22 H 0.05 1.75 5.40 -2.39 -0.01 1.74 16 23 H 0.05 1.82 6.38 -2.39 -0.02 1.81 16 24 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.03 1.51 8.14 -2.39 -0.02 1.50 16 26 H 0.08 3.81 5.95 -2.39 -0.01 3.80 16 27 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 28 H 0.40 14.12 6.68 -92.71 -0.62 13.50 16 29 H 0.15 6.23 4.05 -2.91 -0.01 6.22 16 30 H 0.18 4.22 8.06 -2.91 -0.02 4.20 16 31 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.09 1.83 7.03 -2.39 -0.02 1.81 16 33 H 0.07 1.67 6.67 -2.39 -0.02 1.66 16 Total: -1.00 -53.43 278.07 3.08 -50.35 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 0.52 Total: 23.78 kcal Atomic # 6 Polarization: -24.33 SS G_CDS: 4.03 Total: -20.31 kcal Atomic # 7 Polarization: -92.02 SS G_CDS: -3.42 Total: -95.44 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -0.07 Total: -1.12 kcal Total: -53.43 3.08 -50.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690368923.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.289 kcal (2) G-P(sol) polarization free energy of solvation -53.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds