Wall clock time and date at job start Mon Mar 30 2020 07:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33641 * 122.75359 * 2 1 4 4 S 1.76199 * 107.92358 * 179.75753 * 3 2 1 5 5 C 1.70970 * 90.28479 * 0.28353 * 4 3 2 6 6 C 1.50701 * 124.91746 * 179.97438 * 5 4 3 7 7 N 1.46901 * 109.46921 * 269.69443 * 6 5 4 8 8 C 1.46901 * 110.99975 * 66.04817 * 7 6 5 9 9 C 1.46903 * 110.99790 * 189.99765 * 7 6 5 10 10 H 1.08996 * 109.47031 * 55.00311 * 9 7 6 11 11 C 1.52999 * 109.47184 * 295.00231 * 9 7 6 12 12 C 1.53002 * 109.47109 * 175.00425 * 9 7 6 13 13 C 1.50706 * 109.46818 * 294.99875 * 12 9 7 14 14 H 1.08001 * 119.99959 * 0.02562 * 13 12 9 15 15 C 1.37875 * 119.99816 * 179.97438 * 13 12 9 16 16 N 1.31513 * 120.00261 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99807 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47274 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47139 * 120.00689 * 17 15 13 20 20 H 1.48510 * 109.47036 * 240.00372 * 17 15 13 21 21 N 1.29032 * 110.17054 * 359.71196 * 5 4 3 22 22 H 1.08997 * 109.47239 * 270.02328 * 1 2 3 23 23 H 1.09000 * 109.46714 * 30.02217 * 1 2 3 24 24 H 1.08997 * 109.47041 * 150.02453 * 1 2 3 25 25 H 1.07998 * 126.03224 * 359.97438 * 3 2 1 26 26 H 1.09002 * 109.47060 * 29.69624 * 6 5 4 27 27 H 1.09001 * 109.47380 * 149.69712 * 6 5 4 28 28 H 1.09001 * 109.47121 * 59.99638 * 8 7 6 29 29 H 1.09005 * 109.47342 * 179.97438 * 8 7 6 30 30 H 1.08999 * 109.46894 * 299.99652 * 8 7 6 31 31 H 1.08995 * 109.47368 * 60.00024 * 11 9 7 32 32 H 1.09004 * 109.47302 * 180.02562 * 11 9 7 33 33 H 1.09005 * 109.46983 * 300.00008 * 11 9 7 34 34 H 1.08998 * 109.47305 * 54.99871 * 12 9 7 35 35 H 1.08995 * 109.47024 * 175.00527 * 12 9 7 36 36 H 0.96997 * 119.99944 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1239 0.0000 4 16 3.9333 0.6730 0.0071 5 6 3.5040 -0.9820 0.0009 6 6 4.4834 -2.1272 0.0022 7 7 4.8021 -2.5005 -1.3824 8 6 5.5278 -1.4209 -2.0650 9 6 5.5629 -3.7564 -1.4272 10 1 5.0117 -4.5342 -0.8987 11 6 6.9240 -3.5523 -0.7589 12 6 5.7679 -4.1768 -2.8839 13 6 4.4335 -4.4966 -3.5070 14 1 3.5296 -4.4083 -2.9225 15 6 4.3665 -4.9008 -4.8235 16 7 5.4671 -5.0077 -5.5354 17 14 2.7124 -5.2964 -5.5960 18 1 1.6368 -5.0980 -4.5916 19 1 2.4793 -4.3971 -6.7545 20 1 2.7060 -6.7084 -6.0563 21 7 2.2199 -1.1085 0.0005 22 1 -0.3633 0.0004 1.0276 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3633 -0.8902 -0.5134 25 1 1.8392 2.1307 -0.0004 26 1 5.3958 -1.8245 0.5161 27 1 4.0431 -2.9814 0.5166 28 1 6.4581 -1.2168 -1.5350 29 1 5.7516 -1.7237 -3.0879 30 1 4.9123 -0.5214 -2.0784 31 1 6.7780 -3.2529 0.2789 32 1 7.4887 -4.4841 -0.7925 33 1 7.4753 -2.7745 -1.2874 34 1 6.2401 -3.3628 -3.4340 35 1 6.4069 -5.0591 -2.9210 36 1 5.4200 -5.2924 -6.4614 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695787383.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:46 Heat of formation + Delta-G solvation = 45.325018 kcal Electronic energy + Delta-G solvation = -16836.320132 eV Core-core repulsion = 14254.446472 eV Total energy + Delta-G solvation = -2581.873660 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.75661 -37.87432 -33.28861 -32.16335 -30.47343 -28.01387 -27.48676 -27.09426 -25.06960 -23.14343 -21.64637 -19.47511 -18.79450 -17.49200 -16.17220 -15.87204 -15.32093 -14.50173 -14.41081 -14.31683 -13.80458 -13.31404 -13.12661 -12.58741 -12.47992 -12.36302 -12.12264 -11.70470 -11.59606 -11.38772 -11.24550 -10.95481 -10.80593 -10.62268 -10.38410 -9.97560 -9.45309 -9.29264 -9.12891 -8.95285 -8.58473 -8.23965 -7.56898 -5.87244 -3.84633 0.82382 1.49264 1.86480 2.92459 3.40601 3.48005 3.55800 4.16971 4.58805 4.64520 5.05750 5.19030 5.28686 5.40764 5.50450 5.56432 5.66535 5.71032 5.76032 5.88034 5.90710 5.96093 6.00580 6.10744 6.33077 6.42588 6.60848 6.71008 6.93209 7.47892 7.60220 7.85057 7.95148 7.96940 8.14260 8.59006 9.22508 9.77609 11.24716 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.019896 B = 0.006540 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.003850 B = 4280.194598 C = 5227.410792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.070 3.930 3 C -0.274 4.274 4 S 0.100 5.900 5 C 0.085 3.915 6 C 0.123 3.877 7 N -0.504 5.504 8 C 0.016 3.984 9 C 0.088 3.912 10 H 0.074 0.926 11 C -0.187 4.187 12 C 0.028 3.972 13 C -0.490 4.490 14 H 0.062 0.938 15 C 0.050 3.950 16 N -0.905 5.905 17 Si 0.888 3.112 18 H -0.272 1.272 19 H -0.287 1.287 20 H -0.287 1.287 21 N -0.459 5.459 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.172 0.828 26 H 0.050 0.950 27 H 0.100 0.900 28 H 0.019 0.981 29 H 0.090 0.910 30 H 0.053 0.947 31 H 0.040 0.960 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.021 0.979 35 H 0.021 0.979 36 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.868 11.862 12.801 17.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.062 4.062 3 C -0.413 4.413 4 S 0.355 5.645 5 C -0.194 4.194 6 C -0.008 4.008 7 N -0.228 5.228 8 C -0.132 4.132 9 C -0.020 4.020 10 H 0.092 0.908 11 C -0.245 4.245 12 C -0.009 4.009 13 C -0.528 4.528 14 H 0.081 0.919 15 C -0.149 4.149 16 N -0.546 5.546 17 Si 0.717 3.283 18 H -0.197 1.197 19 H -0.214 1.214 20 H -0.214 1.214 21 N -0.173 5.173 22 H 0.091 0.909 23 H 0.090 0.910 24 H 0.096 0.904 25 H 0.190 0.810 26 H 0.068 0.932 27 H 0.118 0.882 28 H 0.038 0.962 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.039 0.961 35 H 0.039 0.961 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.530 11.756 12.394 17.268 hybrid contribution -1.011 0.056 -0.224 1.037 sum -3.541 11.811 12.170 17.325 Atomic orbital electron populations 1.20345 0.87382 1.03418 1.02606 1.20356 0.98254 0.86611 1.00998 1.26708 0.95182 1.03670 1.15774 1.83902 1.07741 1.04303 1.68594 1.27065 0.93974 0.97374 1.01009 1.20716 0.93461 0.93514 0.93129 1.62080 1.46222 1.03710 1.10802 1.22573 0.95330 0.94024 1.01318 1.21987 0.89622 0.89492 1.00858 0.90782 1.22555 1.00448 1.02190 0.99353 1.19254 0.97540 0.96385 0.87692 1.21244 0.93334 1.42387 0.95873 0.91932 1.24994 0.96061 0.96299 0.97519 1.69970 1.26736 1.49185 1.08681 0.86587 0.84957 0.77580 0.79224 1.19678 1.21384 1.21371 1.66109 1.04609 1.31051 1.15571 0.90882 0.90954 0.90369 0.81049 0.93202 0.88178 0.96234 0.89166 0.92800 0.94088 0.92196 0.92722 0.96051 0.96067 0.93401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.31 36.01 0.37 -0.49 16 2 C 0.07 1.01 6.74 -84.22 -0.57 0.44 16 3 C -0.27 -3.43 11.13 29.12 0.32 -3.11 16 4 S 0.10 1.31 21.69 -107.50 -2.33 -1.03 16 5 C 0.09 1.37 6.16 -13.45 -0.08 1.29 16 6 C 0.12 1.98 4.98 -4.97 -0.02 1.96 16 7 N -0.50 -9.73 4.46 -236.32 -1.05 -10.78 16 8 C 0.02 0.29 8.47 60.07 0.51 0.80 16 9 C 0.09 1.77 2.29 -67.71 -0.16 1.61 16 10 H 0.07 1.51 8.03 -51.93 -0.42 1.10 16 11 C -0.19 -3.07 8.50 37.16 0.32 -2.75 16 12 C 0.03 0.71 4.27 -27.88 -0.12 0.59 16 13 C -0.49 -13.88 8.84 -34.44 -0.30 -14.18 16 14 H 0.06 1.81 7.74 -52.49 -0.41 1.40 16 15 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 16 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 17 Si 0.89 22.55 29.54 -169.99 -5.02 17.53 16 18 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 N -0.46 -7.92 10.53 -8.05 -0.08 -8.01 16 22 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 24 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 26 H 0.05 0.70 6.94 -51.93 -0.36 0.34 16 27 H 0.10 1.60 8.00 -51.93 -0.42 1.18 16 28 H 0.02 0.31 6.51 -51.93 -0.34 -0.03 16 29 H 0.09 1.87 6.03 -51.93 -0.31 1.56 16 30 H 0.05 0.92 6.07 -51.93 -0.32 0.60 16 31 H 0.04 0.58 6.75 -51.93 -0.35 0.23 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.89 6.47 -51.93 -0.34 0.56 16 34 H 0.02 0.57 6.09 -51.93 -0.32 0.25 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 303.66 15.07 4.58 4.58 Total: -1.00 -31.66 303.66 -8.25 -39.91 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -5.24 Total: -3.07 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 0.17 Total: -12.47 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: -0.40 Total: -45.44 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -2.33 Total: -1.03 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.66 -8.25 -39.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695787383.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.232 kcal (2) G-P(sol) polarization free energy of solvation -31.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds