Wall clock time and date at job start Mon Mar 30 2020 07:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33641 * 122.75359 * 2 1 4 4 S 1.76199 * 107.92358 * 179.75753 * 3 2 1 5 5 C 1.70970 * 90.28479 * 0.28353 * 4 3 2 6 6 C 1.50701 * 124.91746 * 179.97438 * 5 4 3 7 7 N 1.46901 * 109.46921 * 269.69443 * 6 5 4 8 8 C 1.46901 * 110.99975 * 66.04817 * 7 6 5 9 9 C 1.46903 * 110.99790 * 189.99765 * 7 6 5 10 10 H 1.08996 * 109.47031 * 55.00311 * 9 7 6 11 11 C 1.52999 * 109.47184 * 295.00231 * 9 7 6 12 12 C 1.53002 * 109.47109 * 175.00425 * 9 7 6 13 13 C 1.50706 * 109.46818 * 294.99875 * 12 9 7 14 14 H 1.08001 * 119.99959 * 0.02562 * 13 12 9 15 15 C 1.37875 * 119.99816 * 179.97438 * 13 12 9 16 16 N 1.31513 * 120.00261 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99807 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47274 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47139 * 120.00689 * 17 15 13 20 20 H 1.48510 * 109.47036 * 240.00372 * 17 15 13 21 21 N 1.29032 * 110.17054 * 359.71196 * 5 4 3 22 22 H 1.08997 * 109.47239 * 270.02328 * 1 2 3 23 23 H 1.09000 * 109.46714 * 30.02217 * 1 2 3 24 24 H 1.08997 * 109.47041 * 150.02453 * 1 2 3 25 25 H 1.07998 * 126.03224 * 359.97438 * 3 2 1 26 26 H 1.09002 * 109.47060 * 29.69624 * 6 5 4 27 27 H 1.09001 * 109.47380 * 149.69712 * 6 5 4 28 28 H 1.09001 * 109.47121 * 59.99638 * 8 7 6 29 29 H 1.09005 * 109.47342 * 179.97438 * 8 7 6 30 30 H 1.08999 * 109.46894 * 299.99652 * 8 7 6 31 31 H 1.08995 * 109.47368 * 60.00024 * 11 9 7 32 32 H 1.09004 * 109.47302 * 180.02562 * 11 9 7 33 33 H 1.09005 * 109.46983 * 300.00008 * 11 9 7 34 34 H 1.08998 * 109.47305 * 54.99871 * 12 9 7 35 35 H 1.08995 * 109.47024 * 175.00527 * 12 9 7 36 36 H 0.96997 * 119.99944 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1239 0.0000 4 16 3.9333 0.6730 0.0071 5 6 3.5040 -0.9820 0.0009 6 6 4.4834 -2.1272 0.0022 7 7 4.8021 -2.5005 -1.3824 8 6 5.5278 -1.4209 -2.0650 9 6 5.5629 -3.7564 -1.4272 10 1 5.0117 -4.5342 -0.8987 11 6 6.9240 -3.5523 -0.7589 12 6 5.7679 -4.1768 -2.8839 13 6 4.4335 -4.4966 -3.5070 14 1 3.5296 -4.4083 -2.9225 15 6 4.3665 -4.9008 -4.8235 16 7 5.4671 -5.0077 -5.5354 17 14 2.7124 -5.2964 -5.5960 18 1 1.6368 -5.0980 -4.5916 19 1 2.4793 -4.3971 -6.7545 20 1 2.7060 -6.7084 -6.0563 21 7 2.2199 -1.1085 0.0005 22 1 -0.3633 0.0004 1.0276 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3633 -0.8902 -0.5134 25 1 1.8392 2.1307 -0.0004 26 1 5.3958 -1.8245 0.5161 27 1 4.0431 -2.9814 0.5166 28 1 6.4581 -1.2168 -1.5350 29 1 5.7516 -1.7237 -3.0879 30 1 4.9123 -0.5214 -2.0784 31 1 6.7780 -3.2529 0.2789 32 1 7.4887 -4.4841 -0.7925 33 1 7.4753 -2.7745 -1.2874 34 1 6.2401 -3.3628 -3.4340 35 1 6.4069 -5.0591 -2.9210 36 1 5.4200 -5.2924 -6.4614 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695787383.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:46 Heat of formation + Delta-G solvation = 24.230877 kcal Electronic energy + Delta-G solvation = -16837.234843 eV Core-core repulsion = 14254.446472 eV Total energy + Delta-G solvation = -2582.788371 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.86393 -39.34480 -35.16101 -33.66102 -31.92099 -29.36968 -28.99235 -28.34408 -26.45448 -25.05136 -22.97284 -20.57397 -20.37545 -18.55922 -18.36729 -17.30413 -16.69055 -16.26574 -15.67425 -15.61343 -15.10569 -14.70673 -14.25439 -14.14725 -13.86110 -13.53927 -13.42164 -13.20574 -13.08948 -12.95008 -12.70733 -12.47627 -12.37423 -12.26238 -12.15709 -11.83756 -11.09981 -11.08721 -10.53480 -10.48403 -10.29660 -9.62092 -8.97893 -8.11460 -6.15041 -0.24455 0.45898 0.81868 1.37705 1.39262 1.52883 1.83296 2.46009 3.05636 3.20950 3.31882 3.97829 4.20257 4.24385 4.29003 4.34757 4.41636 4.47227 4.58444 4.61027 4.73210 4.77840 4.86410 4.96701 5.00982 5.13133 5.21448 5.27286 5.38661 5.49347 5.70375 5.89839 6.27190 6.30486 6.47940 6.90032 6.98975 7.50617 9.00464 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.019896 B = 0.006540 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.003850 B = 4280.194598 C = 5227.410792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.040 3.960 3 C -0.262 4.262 4 S 0.142 5.858 5 C 0.050 3.950 6 C 0.129 3.871 7 N -0.532 5.532 8 C 0.025 3.975 9 C 0.097 3.903 10 H 0.066 0.934 11 C -0.176 4.176 12 C 0.034 3.966 13 C -0.498 4.498 14 H 0.051 0.949 15 C -0.002 4.002 16 N -0.937 5.937 17 Si 0.950 3.050 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.278 1.278 21 N -0.496 5.496 22 H 0.088 0.912 23 H 0.096 0.904 24 H 0.060 0.940 25 H 0.207 0.793 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.004 0.996 35 H -0.003 1.003 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.492 13.617 13.988 19.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.091 4.091 3 C -0.401 4.401 4 S 0.397 5.603 5 C -0.228 4.228 6 C -0.002 4.002 7 N -0.256 5.256 8 C -0.123 4.123 9 C -0.011 4.011 10 H 0.084 0.916 11 C -0.234 4.234 12 C -0.003 4.003 13 C -0.537 4.537 14 H 0.069 0.931 15 C -0.198 4.198 16 N -0.579 5.579 17 Si 0.777 3.223 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.204 1.204 21 N -0.212 5.212 22 H 0.106 0.894 23 H 0.115 0.885 24 H 0.079 0.921 25 H 0.224 0.776 26 H 0.094 0.906 27 H 0.112 0.888 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.022 0.978 35 H 0.016 0.984 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.152 13.509 13.593 19.422 hybrid contribution -0.836 -0.406 -0.566 1.088 sum -3.988 13.103 13.028 18.903 Atomic orbital electron populations 1.20424 0.85556 1.03745 1.03725 1.20840 0.99690 0.86525 1.02062 1.27185 0.94785 1.04794 1.13311 1.83659 1.07831 1.01547 1.67301 1.27015 0.93913 0.99037 1.02858 1.20665 0.94586 0.93866 0.91090 1.61889 1.46663 1.03603 1.13453 1.22426 0.96555 0.93817 0.99514 1.21660 0.91931 0.90105 0.97438 0.91568 1.22412 0.97903 1.02478 1.00652 1.19108 0.95428 0.94722 0.91059 1.21511 0.94225 1.41855 0.96101 0.93075 1.25767 0.99403 0.96430 0.98203 1.70075 1.28631 1.50196 1.09031 0.85614 0.80785 0.77714 0.78216 1.19665 1.20895 1.20405 1.66111 1.05592 1.33213 1.16247 0.89367 0.88526 0.92090 0.77632 0.90605 0.88815 0.93779 0.92713 0.91984 0.91041 0.92036 0.92578 0.97819 0.98429 0.93231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.52 10.31 71.24 0.73 -0.79 16 2 C 0.04 1.09 6.74 41.52 0.28 1.37 16 3 C -0.26 -5.76 11.13 66.78 0.74 -5.02 16 4 S 0.14 3.34 21.69 -56.49 -1.23 2.12 16 5 C 0.05 1.55 6.16 88.52 0.55 2.10 16 6 C 0.13 3.98 4.98 85.56 0.43 4.41 16 7 N -0.53 -20.37 4.46 -901.59 -4.02 -24.39 16 8 C 0.03 0.89 8.47 127.69 1.08 1.97 16 9 C 0.10 3.89 2.29 44.92 0.10 3.99 16 10 H 0.07 2.74 8.03 -2.39 -0.02 2.72 16 11 C -0.18 -5.51 8.50 71.98 0.61 -4.90 16 12 C 0.03 1.76 4.27 29.85 0.13 1.89 16 13 C -0.50 -28.97 8.84 25.60 0.23 -28.75 16 14 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 15 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 16 N -0.94 -57.87 13.29 21.45 0.28 -57.59 16 17 Si 0.95 46.95 29.54 68.60 2.03 48.98 16 18 H -0.27 -13.31 7.11 99.48 0.71 -12.60 16 19 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 20 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 21 N -0.50 -16.76 10.53 -179.40 -1.89 -18.65 16 22 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.10 1.42 8.12 -2.39 -0.02 1.41 16 24 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.21 2.93 8.06 -2.91 -0.02 2.90 16 26 H 0.08 1.91 6.94 -2.39 -0.02 1.89 16 27 H 0.09 2.95 8.00 -2.39 -0.02 2.93 16 28 H 0.04 1.32 6.51 -2.39 -0.02 1.31 16 29 H 0.05 2.33 6.03 -2.38 -0.01 2.31 16 30 H 0.06 2.06 6.07 -2.39 -0.01 2.04 16 31 H 0.07 1.81 6.75 -2.39 -0.02 1.80 16 32 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.06 1.74 6.47 -2.38 -0.02 1.72 16 34 H 0.00 0.20 6.09 -2.39 -0.01 0.18 16 35 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 36 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -69.48 303.66 1.58 -67.90 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: 1.06 Total: 5.00 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: 5.34 Total: -23.37 kcal Atomic # 7 Polarization: -95.01 SS G_CDS: -5.62 Total: -100.63 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Atomic # 16 Polarization: 3.34 SS G_CDS: -1.23 Total: 2.12 kcal Total: -69.48 1.58 -67.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695787383.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.132 kcal (2) G-P(sol) polarization free energy of solvation -69.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds