Wall clock time and date at job start Mon Mar 30 2020 06:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47239 * 2 1 4 4 C 1.53001 * 109.47041 * 239.99780 * 2 1 3 5 5 C 1.50702 * 109.47055 * 176.37433 * 4 2 1 6 6 H 1.07995 * 119.99973 * 5.10649 * 5 4 2 7 7 C 1.37874 * 120.00115 * 185.10828 * 5 4 2 8 8 N 1.31519 * 120.00000 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00126 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47393 * 90.00142 * 9 7 5 11 11 H 1.48507 * 109.47275 * 209.99941 * 9 7 5 12 12 H 1.48501 * 109.46962 * 329.99750 * 9 7 5 13 13 O 1.42899 * 109.47154 * 119.99981 * 2 1 3 14 14 C 1.35953 * 117.00003 * 277.50560 * 13 2 1 15 15 C 1.38949 * 120.06506 * 95.57410 * 14 13 2 16 16 F 1.35106 * 120.04580 * 359.95357 * 15 14 13 17 17 C 1.38286 * 119.90373 * 179.97438 * 15 14 13 18 18 C 1.38295 * 120.03029 * 359.97438 * 17 15 14 19 19 C 1.38215 * 120.13082 * 359.72230 * 18 17 15 20 20 C 1.38228 * 120.08931 * 0.55604 * 19 18 17 21 21 C 1.50705 * 120.01544 * 179.72279 * 20 19 18 22 22 O 1.42897 * 109.47059 * 356.25972 * 21 20 19 23 23 H 1.08998 * 109.47334 * 65.11470 * 1 2 3 24 24 H 1.08999 * 109.47375 * 185.11150 * 1 2 3 25 25 H 1.08996 * 109.47359 * 305.11390 * 1 2 3 26 26 H 1.08996 * 109.47870 * 296.37820 * 4 2 1 27 27 H 1.09009 * 109.46930 * 56.37994 * 4 2 1 28 28 H 0.97000 * 120.00006 * 179.97438 * 8 7 5 29 29 H 1.07999 * 119.98160 * 180.02562 * 17 15 14 30 30 H 1.08007 * 119.93482 * 179.97438 * 18 17 15 31 31 H 1.07999 * 119.96052 * 180.27383 * 19 18 17 32 32 H 1.09001 * 109.47052 * 236.26244 * 21 20 19 33 33 H 1.08993 * 109.47523 * 116.26106 * 21 20 19 34 34 H 0.96692 * 114.00187 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5443 -0.6440 -1.2950 6 1 4.0877 -0.2046 -0.4716 7 6 4.2269 -1.1341 -2.3881 8 7 3.5651 -1.6686 -3.3911 9 14 6.0916 -1.0389 -2.4445 10 1 6.6684 -2.2689 -1.8450 11 1 6.5387 -0.9194 -3.8556 12 1 6.5500 0.1474 -1.6778 13 8 2.0063 -0.6736 1.1668 14 6 2.0629 0.0491 2.3169 15 6 1.0143 -0.0074 3.2268 16 9 -0.0637 -0.7801 2.9696 17 6 1.0756 0.7287 4.3959 18 6 2.1793 1.5194 4.6588 19 6 3.2258 1.5718 3.7576 20 6 3.1675 0.8426 2.5847 21 6 4.3068 0.9058 1.6003 22 8 5.2810 1.8453 2.0588 23 1 -0.3634 0.4324 -0.9322 24 1 -0.3634 -1.0236 0.0916 25 1 -0.3634 0.5911 0.8406 26 1 1.7307 -1.7660 -1.2174 27 1 1.6246 -0.2463 -2.1381 28 1 4.0453 -2.0131 -4.1602 29 1 0.2615 0.6854 5.1042 30 1 2.2253 2.0941 5.5722 31 1 4.0884 2.1868 3.9677 32 1 3.9292 1.2198 0.6272 33 1 4.7654 -0.0789 1.5115 34 1 6.0443 1.9382 1.4726 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695809948.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:43 Heat of formation + Delta-G solvation = -138.662534 kcal Electronic energy + Delta-G solvation = -19267.976055 eV Core-core repulsion = 16079.618169 eV Total energy + Delta-G solvation = -3188.357886 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.86416 -41.06181 -38.74939 -37.51097 -35.41018 -33.46218 -32.29392 -30.53400 -29.39780 -27.13728 -25.35854 -23.60550 -22.68235 -21.98450 -19.03059 -18.90903 -18.23176 -17.89737 -17.05485 -16.97342 -16.50354 -16.09143 -15.85402 -15.42036 -15.26548 -15.11781 -14.54137 -13.97453 -13.90098 -13.52465 -13.31763 -13.28622 -13.05421 -12.73568 -12.68514 -12.47193 -12.22257 -12.15780 -11.40179 -11.29989 -11.05176 -10.68675 -10.55859 -9.68361 -9.54153 -8.17234 -6.25627 0.04212 0.12902 1.39391 1.42023 1.50492 2.36022 2.41644 2.84735 2.94035 3.18542 3.50492 3.82360 4.00657 4.05716 4.16115 4.29671 4.32889 4.39443 4.45913 4.50446 4.61557 4.80958 5.00604 5.03808 5.10914 5.13703 5.34905 5.38571 5.46416 5.50136 5.80656 5.81629 6.22847 6.66501 6.76728 6.87377 7.41450 8.95361 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.022023 B = 0.007868 C = 0.006080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.098485 B = 3557.848622 C = 4604.025652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.106 3.894 3 H 0.052 0.948 4 C 0.029 3.971 5 C -0.532 4.532 6 H 0.080 0.920 7 C -0.001 4.001 8 N -0.936 5.936 9 Si 0.955 3.045 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.249 1.249 13 O -0.335 6.335 14 C 0.049 3.951 15 C 0.056 3.944 16 F -0.144 7.144 17 C -0.137 4.137 18 C -0.090 4.090 19 C -0.096 4.096 20 C -0.102 4.102 21 C 0.122 3.878 22 O -0.573 6.573 23 H 0.076 0.924 24 H 0.054 0.946 25 H 0.058 0.942 26 H -0.009 1.009 27 H 0.022 0.978 28 H 0.261 0.739 29 H 0.168 0.832 30 H 0.178 0.822 31 H 0.153 0.847 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.182 8.822 15.243 17.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.052 3.948 3 H 0.070 0.930 4 C -0.008 4.008 5 C -0.569 4.569 6 H 0.098 0.902 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.780 3.220 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.173 1.173 13 O -0.252 6.252 14 C 0.004 3.996 15 C 0.036 3.964 16 F -0.122 7.122 17 C -0.155 4.155 18 C -0.107 4.107 19 C -0.114 4.114 20 C -0.103 4.103 21 C 0.045 3.955 22 O -0.381 6.381 23 H 0.095 0.905 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.010 0.990 27 H 0.040 0.960 28 H 0.070 0.930 29 H 0.185 0.815 30 H 0.195 0.805 31 H 0.171 0.829 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -1.579 8.594 15.509 17.802 hybrid contribution 0.817 -0.682 -1.371 1.735 sum -0.762 7.913 14.138 16.220 Atomic orbital electron populations 1.22298 0.95397 1.02216 1.02393 1.22485 0.93067 0.95250 0.84047 0.92951 1.19113 0.96448 0.94595 0.90638 1.21804 0.92573 1.38844 1.03704 0.90205 1.25939 1.03475 0.95085 0.95367 1.70099 1.37488 1.41649 1.08470 0.85586 0.79757 0.79179 0.77492 1.20612 1.21108 1.17278 1.86189 1.85482 1.38060 1.15511 1.18878 0.94036 0.97360 0.89365 1.18315 0.83998 0.96270 0.97775 1.91453 1.52893 1.73370 1.94510 1.21450 1.01668 0.97185 0.95202 1.21466 0.91319 0.97584 1.00370 1.21217 1.00224 0.98104 0.91885 1.20135 0.94728 0.97380 0.98045 1.20770 0.87801 0.92377 0.94586 1.86235 1.35287 1.63219 1.53400 0.90464 0.92735 0.92320 0.99042 0.95952 0.92988 0.81458 0.80496 0.82948 0.92209 0.92740 0.74933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.18 8.94 71.98 0.64 -5.54 16 2 C 0.11 4.64 2.34 30.59 0.07 4.71 16 3 H 0.05 2.23 7.12 -2.39 -0.02 2.21 16 4 C 0.03 1.54 4.69 29.85 0.14 1.68 16 5 C -0.53 -29.30 8.85 25.60 0.23 -29.07 16 6 H 0.08 4.06 4.25 -2.91 -0.01 4.05 16 7 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 8 N -0.94 -56.57 13.29 21.45 0.28 -56.29 16 9 Si 0.96 42.95 29.54 68.60 2.03 44.98 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 11 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 13 O -0.33 -14.91 8.76 -93.01 -0.82 -15.72 16 14 C 0.05 1.80 5.47 22.53 0.12 1.93 16 15 C 0.06 1.80 6.93 22.45 0.16 1.96 16 16 F -0.14 -4.96 16.27 44.97 0.73 -4.23 16 17 C -0.14 -3.12 10.02 22.29 0.22 -2.90 16 18 C -0.09 -1.77 10.04 22.28 0.22 -1.55 16 19 C -0.10 -2.45 9.37 22.26 0.21 -2.25 16 20 C -0.10 -3.40 5.89 -19.77 -0.12 -3.51 16 21 C 0.12 4.18 5.69 71.24 0.41 4.59 16 22 O -0.57 -15.72 12.15 -148.98 -1.81 -17.52 16 23 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 24 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.06 1.97 7.39 -2.39 -0.02 1.95 16 26 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 27 H 0.02 1.24 8.14 -2.38 -0.02 1.22 16 28 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 29 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 30 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 31 H 0.15 3.45 7.01 -2.91 -0.02 3.43 16 32 H 0.06 2.30 5.49 -2.39 -0.01 2.28 16 33 H 0.05 2.04 7.73 -2.39 -0.02 2.02 16 34 H 0.40 7.90 9.12 -74.06 -0.68 7.22 16 Total: -1.00 -67.92 290.12 3.64 -64.29 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.45 Total: 14.08 kcal Atomic # 6 Polarization: -32.34 SS G_CDS: 2.77 Total: -29.57 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: 0.28 Total: -56.29 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -2.63 Total: -33.25 kcal Atomic # 9 Polarization: -4.96 SS G_CDS: 0.73 Total: -4.23 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -67.92 3.64 -64.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695809948.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.376 kcal (2) G-P(sol) polarization free energy of solvation -67.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds