Wall clock time and date at job start Mon Mar 30 2020 07:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37813 * 121.55844 * 2 1 4 4 C 1.35136 * 114.75687 * 180.21034 * 3 2 1 5 5 C 1.50706 * 127.24775 * 179.86584 * 4 3 2 6 6 N 1.46898 * 109.46974 * 89.70442 * 5 4 3 7 7 C 1.46896 * 110.99987 * 66.04732 * 6 5 4 8 8 C 1.46903 * 111.00059 * 190.00204 * 6 5 4 9 9 H 1.08998 * 109.47318 * 186.10621 * 8 6 5 10 10 C 1.53005 * 109.46886 * 306.10749 * 8 6 5 11 11 C 1.53001 * 109.47086 * 66.10326 * 8 6 5 12 12 C 1.50703 * 109.46590 * 62.83481 * 11 8 6 13 13 H 1.07993 * 120.00457 * 355.45426 * 12 11 8 14 14 C 1.37886 * 119.99512 * 175.45697 * 12 11 8 15 15 N 1.31512 * 119.99521 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00178 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47169 * 89.99683 * 16 14 12 18 18 H 1.48493 * 109.47289 * 210.00034 * 16 14 12 19 19 H 1.48505 * 109.47099 * 330.00027 * 16 14 12 20 20 S 1.72050 * 105.50431 * 359.60263 * 4 3 2 21 21 N 1.30075 * 121.55986 * 179.75278 * 2 1 3 22 22 H 1.09003 * 109.47019 * 270.23107 * 1 2 3 23 23 H 1.09007 * 109.47130 * 30.22202 * 1 2 3 24 24 H 1.08994 * 109.47691 * 150.22480 * 1 2 3 25 25 H 1.08004 * 122.62196 * 0.03395 * 3 2 1 26 26 H 1.09001 * 109.46912 * 329.70655 * 5 4 3 27 27 H 1.08994 * 109.47239 * 209.70534 * 5 4 3 28 28 H 1.09002 * 109.47581 * 177.58698 * 7 6 5 29 29 H 1.09002 * 109.47272 * 57.58737 * 7 6 5 30 30 H 1.08995 * 109.47292 * 297.58646 * 7 6 5 31 31 H 1.08998 * 109.47246 * 59.99828 * 10 8 6 32 32 H 1.09003 * 109.46976 * 180.02562 * 10 8 6 33 33 H 1.09001 * 109.47030 * 300.00106 * 10 8 6 34 34 H 1.09003 * 109.47010 * 182.82663 * 11 8 6 35 35 H 1.09001 * 109.47363 * 302.83292 * 11 8 6 36 36 H 0.97002 * 119.99615 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2283 1.1743 0.0000 4 6 3.5701 1.0143 -0.0045 5 6 4.6179 2.0975 -0.0085 6 7 4.9579 2.4549 1.3752 7 6 5.6155 1.3351 2.0617 8 6 5.7940 3.6621 1.4168 9 1 6.1208 3.8426 2.4408 10 6 7.0169 3.4666 0.5182 11 6 4.9834 4.8613 0.9211 12 6 3.8174 5.0964 1.8464 13 1 3.6267 4.4118 2.6596 14 6 2.9941 6.1857 1.6548 15 7 1.9763 6.3906 2.4620 16 14 3.3243 7.3702 0.2487 17 1 2.5929 6.9177 -0.9619 18 1 2.8614 8.7294 0.6275 19 1 4.7811 7.4052 -0.0373 20 16 3.8305 -0.6864 0.0029 21 7 2.1878 -1.1083 0.0048 22 1 -0.3633 0.0041 1.0277 23 1 -0.3634 0.8880 -0.5173 24 1 -0.3634 -0.8919 -0.5103 25 1 1.7579 2.1465 0.0005 26 1 4.2310 2.9753 -0.5259 27 1 5.5103 1.7378 -0.5206 28 1 5.8949 1.6406 3.0701 29 1 6.5093 1.0447 1.5094 30 1 4.9305 0.4890 2.1152 31 1 6.6902 3.2860 -0.5058 32 1 7.6376 4.3621 0.5495 33 1 7.5944 2.6122 0.8713 34 1 5.6184 5.7471 0.9044 35 1 4.6144 4.6597 -0.0846 36 1 1.3972 7.1571 2.3275 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695812009.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:35 Heat of formation + Delta-G solvation = 40.412346 kcal Electronic energy + Delta-G solvation = -17002.876175 eV Core-core repulsion = 14420.789485 eV Total energy + Delta-G solvation = -2582.086690 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.05363 -37.94617 -33.21128 -32.09727 -30.53362 -29.43420 -27.87160 -27.07031 -24.61037 -22.49261 -21.47878 -19.33965 -18.84967 -17.58709 -16.60435 -15.72628 -15.10249 -14.41278 -14.35326 -14.14092 -13.90332 -13.18994 -12.84176 -12.65456 -12.53802 -12.25815 -12.17194 -11.93481 -11.83491 -11.72907 -11.48747 -11.16632 -10.84397 -10.53368 -10.23602 -10.15414 -9.82089 -9.62042 -9.17420 -9.07175 -8.47032 -8.33819 -7.67608 -5.94927 -3.89763 0.94359 1.73751 2.08211 2.70985 3.30963 3.39918 3.40902 4.46133 4.49949 4.72083 5.20117 5.35615 5.38949 5.41030 5.48886 5.52198 5.62237 5.64777 5.67251 5.82327 5.85266 5.97224 6.01217 6.19844 6.24869 6.33285 6.34848 6.44190 6.66475 6.91794 7.02848 7.24025 7.59467 7.69782 7.87830 8.68033 9.19603 9.67585 11.18774 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.019495 B = 0.007360 C = 0.005883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.935679 B = 3803.273519 C = 4758.255208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.121 3.879 3 C -0.185 4.185 4 C -0.136 4.136 5 C 0.125 3.875 6 N -0.505 5.505 7 C 0.016 3.984 8 C 0.096 3.904 9 H 0.081 0.919 10 C -0.189 4.189 11 C -0.009 4.009 12 C -0.493 4.493 13 H 0.081 0.919 14 C 0.063 3.937 15 N -0.905 5.905 16 Si 0.869 3.131 17 H -0.280 1.280 18 H -0.290 1.290 19 H -0.268 1.268 20 S 0.213 5.787 21 N -0.473 5.473 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.164 0.836 26 H 0.107 0.893 27 H 0.043 0.957 28 H 0.068 0.932 29 H 0.020 0.980 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.046 0.954 34 H 0.022 0.978 35 H 0.010 0.990 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.051 -10.929 -6.162 13.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.057 4.057 3 C -0.219 4.219 4 C -0.266 4.266 5 C -0.004 4.004 6 N -0.229 5.229 7 C -0.132 4.132 8 C -0.012 4.012 9 H 0.099 0.901 10 C -0.248 4.248 11 C -0.047 4.047 12 C -0.531 4.531 13 H 0.099 0.901 14 C -0.137 4.137 15 N -0.546 5.546 16 Si 0.697 3.303 17 H -0.206 1.206 18 H -0.216 1.216 19 H -0.193 1.193 20 S 0.367 5.633 21 N -0.295 5.295 22 H 0.101 0.899 23 H 0.101 0.899 24 H 0.092 0.908 25 H 0.181 0.819 26 H 0.124 0.876 27 H 0.061 0.939 28 H 0.087 0.913 29 H 0.038 0.962 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.040 0.960 35 H 0.028 0.972 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.352 -12.750 -5.865 14.693 hybrid contribution -0.057 2.232 -1.095 2.487 sum 4.295 -10.518 -6.960 13.324 Atomic orbital electron populations 1.20547 0.86745 1.03539 1.03642 1.21523 0.98962 0.88470 0.96738 1.21261 0.92684 1.00921 1.07057 1.25388 0.98839 1.00001 1.02339 1.20570 0.93112 0.94819 0.91941 1.62049 1.44175 1.03623 1.13010 1.22523 0.96823 0.94642 0.99250 1.21764 0.89798 0.90392 0.99210 0.90096 1.22589 1.00015 1.01398 1.00828 1.19740 0.96099 0.92183 0.96641 1.21063 1.08843 1.09460 1.13731 0.90065 1.25015 0.95222 0.97578 0.95859 1.69911 1.17005 1.29504 1.38141 0.86953 0.78894 0.81037 0.83382 1.20563 1.21586 1.19256 1.83797 1.11522 0.98396 1.69567 1.76640 0.99919 1.26457 1.26472 0.89874 0.89927 0.90759 0.81893 0.87553 0.93905 0.91308 0.96174 0.92004 0.92904 0.92206 0.93524 0.95991 0.97159 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 10.26 36.01 0.37 -0.59 16 2 C 0.12 1.83 6.72 -83.49 -0.56 1.27 16 3 C -0.18 -3.02 9.91 -40.84 -0.40 -3.43 16 4 C -0.14 -2.19 5.32 -35.41 -0.19 -2.38 16 5 C 0.13 2.06 4.49 -4.97 -0.02 2.04 16 6 N -0.51 -9.13 4.31 -236.33 -1.02 -10.15 16 7 C 0.02 0.25 8.94 60.06 0.54 0.79 16 8 C 0.10 1.79 2.28 -67.71 -0.15 1.63 16 9 H 0.08 1.56 7.98 -51.93 -0.41 1.14 16 10 C -0.19 -2.84 8.45 37.16 0.31 -2.53 16 11 C -0.01 -0.21 3.44 -27.88 -0.10 -0.30 16 12 C -0.49 -13.41 9.35 -34.44 -0.32 -13.73 16 13 H 0.08 2.45 7.93 -52.49 -0.42 2.04 16 14 C 0.06 1.79 5.47 -17.82 -0.10 1.69 16 15 N -0.91 -27.47 13.96 55.43 0.77 -26.70 16 16 Si 0.87 21.12 27.56 -169.99 -4.69 16.43 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.27 -6.22 6.41 56.52 0.36 -5.86 16 20 S 0.21 3.15 22.45 -107.50 -2.41 0.74 16 21 N -0.47 -7.59 12.05 32.02 0.39 -7.20 16 22 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 23 H 0.08 0.84 8.12 -51.93 -0.42 0.42 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.16 2.74 8.06 -52.48 -0.42 2.31 16 26 H 0.11 1.89 6.04 -51.93 -0.31 1.58 16 27 H 0.04 0.63 6.81 -51.93 -0.35 0.27 16 28 H 0.07 1.03 8.01 -51.93 -0.42 0.61 16 29 H 0.02 0.27 6.88 -51.93 -0.36 -0.08 16 30 H 0.06 0.94 6.31 -51.93 -0.33 0.62 16 31 H 0.05 0.76 6.55 -51.93 -0.34 0.42 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.63 6.83 -51.93 -0.35 0.27 16 34 H 0.02 0.50 6.88 -51.93 -0.36 0.14 16 35 H 0.01 0.23 5.91 -51.93 -0.31 -0.08 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 300.62 15.07 4.53 4.53 Total: -1.00 -30.38 300.62 -8.30 -38.68 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -5.24 Total: -0.79 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: -0.63 Total: -15.54 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.14 Total: -44.05 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.69 Total: 16.43 kcal Atomic # 16 Polarization: 3.15 SS G_CDS: -2.41 Total: 0.74 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.38 -8.30 -38.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695812009.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.091 kcal (2) G-P(sol) polarization free energy of solvation -30.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds