Wall clock time and date at job start Mon Mar 30 2020 07:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37813 * 121.55844 * 2 1 4 4 C 1.35136 * 114.75687 * 180.21034 * 3 2 1 5 5 C 1.50706 * 127.24775 * 179.86584 * 4 3 2 6 6 N 1.46898 * 109.46974 * 89.70442 * 5 4 3 7 7 C 1.46896 * 110.99987 * 66.04732 * 6 5 4 8 8 C 1.46903 * 111.00059 * 190.00204 * 6 5 4 9 9 H 1.08998 * 109.47318 * 186.10621 * 8 6 5 10 10 C 1.53005 * 109.46886 * 306.10749 * 8 6 5 11 11 C 1.53001 * 109.47086 * 66.10326 * 8 6 5 12 12 C 1.50703 * 109.46590 * 62.83481 * 11 8 6 13 13 H 1.07993 * 120.00457 * 355.45426 * 12 11 8 14 14 C 1.37886 * 119.99512 * 175.45697 * 12 11 8 15 15 N 1.31512 * 119.99521 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00178 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47169 * 89.99683 * 16 14 12 18 18 H 1.48493 * 109.47289 * 210.00034 * 16 14 12 19 19 H 1.48505 * 109.47099 * 330.00027 * 16 14 12 20 20 S 1.72050 * 105.50431 * 359.60263 * 4 3 2 21 21 N 1.30075 * 121.55986 * 179.75278 * 2 1 3 22 22 H 1.09003 * 109.47019 * 270.23107 * 1 2 3 23 23 H 1.09007 * 109.47130 * 30.22202 * 1 2 3 24 24 H 1.08994 * 109.47691 * 150.22480 * 1 2 3 25 25 H 1.08004 * 122.62196 * 0.03395 * 3 2 1 26 26 H 1.09001 * 109.46912 * 329.70655 * 5 4 3 27 27 H 1.08994 * 109.47239 * 209.70534 * 5 4 3 28 28 H 1.09002 * 109.47581 * 177.58698 * 7 6 5 29 29 H 1.09002 * 109.47272 * 57.58737 * 7 6 5 30 30 H 1.08995 * 109.47292 * 297.58646 * 7 6 5 31 31 H 1.08998 * 109.47246 * 59.99828 * 10 8 6 32 32 H 1.09003 * 109.46976 * 180.02562 * 10 8 6 33 33 H 1.09001 * 109.47030 * 300.00106 * 10 8 6 34 34 H 1.09003 * 109.47010 * 182.82663 * 11 8 6 35 35 H 1.09001 * 109.47363 * 302.83292 * 11 8 6 36 36 H 0.97002 * 119.99615 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2283 1.1743 0.0000 4 6 3.5701 1.0143 -0.0045 5 6 4.6179 2.0975 -0.0085 6 7 4.9579 2.4549 1.3752 7 6 5.6155 1.3351 2.0617 8 6 5.7940 3.6621 1.4168 9 1 6.1208 3.8426 2.4408 10 6 7.0169 3.4666 0.5182 11 6 4.9834 4.8613 0.9211 12 6 3.8174 5.0964 1.8464 13 1 3.6267 4.4118 2.6596 14 6 2.9941 6.1857 1.6548 15 7 1.9763 6.3906 2.4620 16 14 3.3243 7.3702 0.2487 17 1 2.5929 6.9177 -0.9619 18 1 2.8614 8.7294 0.6275 19 1 4.7811 7.4052 -0.0373 20 16 3.8305 -0.6864 0.0029 21 7 2.1878 -1.1083 0.0048 22 1 -0.3633 0.0041 1.0277 23 1 -0.3634 0.8880 -0.5173 24 1 -0.3634 -0.8919 -0.5103 25 1 1.7579 2.1465 0.0005 26 1 4.2310 2.9753 -0.5259 27 1 5.5103 1.7378 -0.5206 28 1 5.8949 1.6406 3.0701 29 1 6.5093 1.0447 1.5094 30 1 4.9305 0.4890 2.1152 31 1 6.6902 3.2860 -0.5058 32 1 7.6376 4.3621 0.5495 33 1 7.5944 2.6122 0.8713 34 1 5.6184 5.7471 0.9044 35 1 4.6144 4.6597 -0.0846 36 1 1.3972 7.1571 2.3275 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695812009.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:35 Heat of formation + Delta-G solvation = 20.954770 kcal Electronic energy + Delta-G solvation = -17003.719919 eV Core-core repulsion = 14420.789485 eV Total energy + Delta-G solvation = -2582.930434 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.29594 -39.28867 -35.04465 -33.68567 -32.02861 -30.47290 -29.49901 -28.34130 -25.99338 -24.20803 -22.83404 -20.63918 -20.22118 -18.83039 -18.68884 -17.06584 -16.63215 -15.95029 -15.67745 -15.42158 -15.27935 -14.67639 -14.25472 -13.98979 -13.97217 -13.72136 -13.43317 -13.31079 -12.99175 -12.97397 -12.82376 -12.56369 -12.53521 -11.80106 -11.78324 -11.68694 -11.44402 -11.36307 -11.11747 -10.64874 -10.41655 -9.50374 -8.98179 -8.13333 -6.12322 -0.29329 0.52291 0.89655 1.39355 1.41727 1.48410 1.51317 2.44555 3.11136 3.26729 3.52867 4.00776 4.12928 4.21306 4.27605 4.39424 4.41814 4.46833 4.58073 4.61335 4.71314 4.73390 4.90537 4.99100 4.99659 5.07981 5.11654 5.20758 5.22378 5.25723 5.56919 5.74035 5.78283 6.26273 6.31346 6.55575 6.97480 7.48351 9.03840 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.019495 B = 0.007360 C = 0.005883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.935679 B = 3803.273519 C = 4758.255208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.119 3.881 3 C -0.203 4.203 4 C -0.146 4.146 5 C 0.129 3.871 6 N -0.536 5.536 7 C 0.020 3.980 8 C 0.100 3.900 9 H 0.067 0.933 10 C -0.179 4.179 11 C -0.007 4.007 12 C -0.488 4.488 13 H 0.036 0.964 14 C 0.000 4.000 15 N -0.957 5.957 16 Si 0.938 3.062 17 H -0.271 1.271 18 H -0.293 1.293 19 H -0.245 1.245 20 S 0.249 5.751 21 N -0.494 5.494 22 H 0.088 0.912 23 H 0.094 0.906 24 H 0.088 0.912 25 H 0.150 0.850 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.025 0.975 35 H 0.019 0.981 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.638 -11.533 -7.887 15.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.058 4.058 3 C -0.238 4.238 4 C -0.276 4.276 5 C 0.000 4.000 6 N -0.260 5.260 7 C -0.128 4.128 8 C -0.008 4.008 9 H 0.085 0.915 10 C -0.238 4.238 11 C -0.045 4.045 12 C -0.526 4.526 13 H 0.055 0.945 14 C -0.195 4.195 15 N -0.600 5.600 16 Si 0.763 3.237 17 H -0.196 1.196 18 H -0.219 1.219 19 H -0.169 1.169 20 S 0.404 5.596 21 N -0.317 5.317 22 H 0.107 0.893 23 H 0.113 0.887 24 H 0.106 0.894 25 H 0.168 0.832 26 H 0.107 0.893 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.043 0.957 35 H 0.037 0.963 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.967 -13.375 -7.599 16.500 hybrid contribution -0.567 2.338 -0.469 2.451 sum 5.399 -11.038 -8.068 14.699 Atomic orbital electron populations 1.20670 0.84560 1.04842 1.04364 1.21843 1.00480 0.87694 0.95813 1.21347 0.93233 1.00976 1.08221 1.25498 0.98802 1.01152 1.02177 1.20513 0.93991 0.94324 0.91190 1.61914 1.45318 1.04435 1.14330 1.22495 0.97507 0.93545 0.99242 1.21555 0.90745 0.89327 0.99204 0.91481 1.22453 0.98280 1.02741 1.00282 1.19691 0.94707 0.94232 0.95852 1.21286 1.10196 1.08077 1.13057 0.94529 1.25904 0.95007 0.99824 0.98790 1.70087 1.18642 1.30561 1.40706 0.85845 0.80005 0.78020 0.79852 1.19640 1.21934 1.16869 1.83565 1.10725 0.96534 1.68816 1.76597 1.00805 1.26952 1.27330 0.89312 0.88742 0.89356 0.83224 0.89298 0.91388 0.91518 0.93708 0.92245 0.92029 0.91405 0.91471 0.95677 0.96268 0.93176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.84 10.26 71.24 0.73 -1.11 16 2 C 0.12 3.53 6.72 42.72 0.29 3.82 16 3 C -0.20 -6.64 9.91 21.45 0.21 -6.43 16 4 C -0.15 -4.59 5.32 24.97 0.13 -4.46 16 5 C 0.13 4.06 4.49 85.56 0.38 4.44 16 6 N -0.54 -18.88 4.31 -901.61 -3.89 -22.77 16 7 C 0.02 0.59 8.94 127.69 1.14 1.73 16 8 C 0.10 3.57 2.28 44.92 0.10 3.67 16 9 H 0.07 2.55 7.98 -2.39 -0.02 2.53 16 10 C -0.18 -4.76 8.45 71.98 0.61 -4.15 16 11 C -0.01 -0.32 3.44 29.85 0.10 -0.22 16 12 C -0.49 -27.09 9.35 25.60 0.24 -26.85 16 13 H 0.04 2.31 7.93 -2.91 -0.02 2.28 16 14 C 0.00 -0.02 5.47 84.66 0.46 0.44 16 15 N -0.96 -59.93 13.96 21.45 0.30 -59.63 16 16 Si 0.94 43.42 27.56 68.60 1.89 45.31 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 19 H -0.25 -10.37 6.41 99.48 0.64 -9.73 16 20 S 0.25 6.96 22.45 -56.49 -1.27 5.69 16 21 N -0.49 -15.28 12.05 -52.60 -0.63 -15.91 16 22 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 23 H 0.09 1.84 8.12 -2.38 -0.02 1.82 16 24 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.15 5.21 8.06 -2.91 -0.02 5.19 16 26 H 0.09 3.08 6.04 -2.39 -0.01 3.06 16 27 H 0.07 1.77 6.81 -2.39 -0.02 1.76 16 28 H 0.07 1.93 8.01 -2.39 -0.02 1.91 16 29 H 0.04 1.07 6.88 -2.39 -0.02 1.05 16 30 H 0.06 1.73 6.31 -2.39 -0.02 1.72 16 31 H 0.06 1.54 6.55 -2.39 -0.02 1.52 16 32 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.07 1.53 6.83 -2.39 -0.02 1.51 16 34 H 0.03 1.08 6.88 -2.39 -0.02 1.07 16 35 H 0.02 0.82 5.91 -2.39 -0.01 0.80 16 36 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -66.27 300.62 1.80 -64.47 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 0.99 Total: 11.95 kcal Atomic # 6 Polarization: -33.51 SS G_CDS: 4.40 Total: -29.11 kcal Atomic # 7 Polarization: -94.09 SS G_CDS: -4.22 Total: -98.31 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 1.89 Total: 45.31 kcal Atomic # 16 Polarization: 6.96 SS G_CDS: -1.27 Total: 5.69 kcal Total: -66.27 1.80 -64.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695812009.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.424 kcal (2) G-P(sol) polarization free energy of solvation -66.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds