Wall clock time and date at job start Mon Mar 30 2020 06:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47670 * 2 1 4 4 C 1.53003 * 109.47740 * 239.99643 * 2 1 3 5 5 C 1.50695 * 109.47443 * 175.00117 * 4 2 1 6 6 H 1.08000 * 120.00122 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00133 * 179.72531 * 5 4 2 8 8 N 1.31521 * 120.00398 * 180.27492 * 7 5 4 9 9 Si 1.86799 * 119.99808 * 0.27808 * 7 5 4 10 10 H 1.48499 * 109.47132 * 90.00234 * 9 7 5 11 11 H 1.48506 * 109.47176 * 209.99970 * 9 7 5 12 12 H 1.48497 * 109.47451 * 329.99375 * 9 7 5 13 13 O 1.42907 * 109.47134 * 119.99957 * 2 1 3 14 14 C 1.35950 * 116.99685 * 275.19907 * 13 2 1 15 15 C 1.38731 * 120.03184 * 5.40880 * 14 13 2 16 16 C 1.38129 * 119.96896 * 179.97438 * 15 14 13 17 17 C 1.38478 * 120.03062 * 359.97314 * 16 15 14 18 18 F 1.35095 * 119.96891 * 179.97438 * 17 16 15 19 19 C 1.38426 * 120.05771 * 0.02658 * 17 16 15 20 20 C 1.38172 * 120.03446 * 359.74265 * 19 17 16 21 21 C 1.50700 * 120.01589 * 180.25614 * 20 19 17 22 22 O 1.42902 * 109.47405 * 0.22802 * 21 20 19 23 23 H 1.08997 * 109.47209 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47592 * 300.00132 * 1 2 3 25 25 H 1.08998 * 109.46453 * 60.00535 * 1 2 3 26 26 H 1.09003 * 109.46725 * 55.00140 * 4 2 1 27 27 H 1.09004 * 109.46830 * 295.00369 * 4 2 1 28 28 H 0.96993 * 119.99873 * 180.02562 * 8 7 5 29 29 H 1.07993 * 120.01508 * 0.02562 * 15 14 13 30 30 H 1.08000 * 119.98611 * 180.02562 * 16 15 14 31 31 H 1.08004 * 119.98201 * 179.97438 * 19 17 16 32 32 H 1.08995 * 109.47044 * 120.23246 * 21 20 19 33 33 H 1.09001 * 109.46963 * 240.23146 * 21 20 19 34 34 H 0.96695 * 114.00286 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5420 -0.6150 -1.3126 6 1 4.0790 -0.0862 -0.5390 7 6 4.2310 -1.1980 -2.3548 8 7 5.5422 -1.1099 -2.4073 9 14 3.3022 -2.1131 -3.6924 10 1 2.9469 -1.1695 -4.7826 11 1 4.1584 -3.1979 -4.2361 12 1 2.0630 -2.6997 -3.1219 13 8 2.0063 -0.6737 1.1668 14 6 2.1085 0.0619 2.3056 15 6 1.6529 1.3720 2.3291 16 6 1.7570 2.1180 3.4870 17 6 2.3152 1.5585 4.6241 18 9 2.4168 2.2894 5.7557 19 6 2.7702 0.2513 4.6019 20 6 2.6630 -0.4987 3.4465 21 6 3.1532 -1.9236 3.4245 22 8 3.6772 -2.2670 4.7088 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 1.6055 -0.2618 -2.1370 27 1 1.7517 -1.7716 -1.2055 28 1 6.0268 -1.5197 -3.1407 29 1 1.2164 1.8082 1.4429 30 1 1.4020 3.1378 3.5058 31 1 3.2057 -0.1837 5.4894 32 1 2.3252 -2.5889 3.1801 33 1 3.9362 -2.0269 2.6732 34 1 4.0113 -3.1725 4.7681 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695816685.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:37 Heat of formation + Delta-G solvation = -138.438108 kcal Electronic energy + Delta-G solvation = -18689.958781 eV Core-core repulsion = 15501.610626 eV Total energy + Delta-G solvation = -3188.348155 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.81288 -41.35457 -38.82915 -37.41889 -35.38628 -33.73432 -32.56234 -30.47454 -29.79453 -27.11450 -25.09738 -24.01373 -22.62205 -21.55286 -19.26785 -18.89817 -18.52310 -18.09349 -17.14054 -16.74339 -16.37824 -16.16225 -15.85763 -15.50673 -15.25488 -15.10952 -14.64067 -14.33451 -13.98123 -13.76581 -13.57771 -13.45749 -12.99415 -12.71821 -12.56856 -12.47044 -12.02519 -11.86182 -11.63111 -11.31538 -11.25878 -11.19535 -10.75847 -9.96961 -8.97962 -8.26532 -6.30756 0.11780 0.21391 1.37766 1.40504 1.51469 2.31678 2.37723 2.54041 3.09846 3.16705 3.27172 3.70636 3.88676 3.98252 4.15238 4.25857 4.28761 4.32847 4.42991 4.52383 4.71592 4.84124 4.85589 4.95500 5.05884 5.10460 5.16255 5.24988 5.30029 5.39916 5.63308 5.78146 6.25985 6.54636 6.76109 6.84611 7.32245 8.90537 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.024305 B = 0.005845 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.734151 B = 4789.333202 C = 5246.961063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.092 3.908 3 H 0.066 0.934 4 C -0.011 4.011 5 C -0.522 4.522 6 H 0.026 0.974 7 C 0.003 3.997 8 N -0.953 5.953 9 Si 0.950 3.050 10 H -0.263 1.263 11 H -0.289 1.289 12 H -0.243 1.243 13 O -0.310 6.310 14 C 0.124 3.876 15 C -0.187 4.187 16 C -0.105 4.105 17 C 0.036 3.964 18 F -0.146 7.146 19 C -0.096 4.096 20 C -0.121 4.121 21 C 0.134 3.866 22 O -0.580 6.580 23 H 0.064 0.936 24 H 0.071 0.929 25 H 0.089 0.911 26 H 0.052 0.948 27 H 0.028 0.972 28 H 0.265 0.735 29 H 0.157 0.843 30 H 0.164 0.836 31 H 0.151 0.849 32 H 0.071 0.929 33 H 0.050 0.950 34 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.176 1.421 10.137 15.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.037 3.963 3 H 0.084 0.916 4 C -0.048 4.048 5 C -0.560 4.560 6 H 0.044 0.956 7 C -0.194 4.194 8 N -0.594 5.594 9 Si 0.773 3.227 10 H -0.187 1.187 11 H -0.215 1.215 12 H -0.166 1.166 13 O -0.224 6.224 14 C 0.077 3.923 15 C -0.206 4.206 16 C -0.124 4.124 17 C 0.017 3.983 18 F -0.125 7.125 19 C -0.115 4.115 20 C -0.122 4.122 21 C 0.057 3.943 22 O -0.389 6.389 23 H 0.084 0.916 24 H 0.090 0.910 25 H 0.108 0.892 26 H 0.070 0.930 27 H 0.047 0.953 28 H 0.074 0.926 29 H 0.174 0.826 30 H 0.182 0.818 31 H 0.168 0.832 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -11.165 1.795 10.165 15.206 hybrid contribution 0.606 -0.652 -0.666 1.112 sum -10.559 1.143 9.500 14.249 Atomic orbital electron populations 1.22366 0.93067 1.03539 1.03789 1.22563 0.94447 0.96232 0.83056 0.91627 1.19707 0.94567 0.97192 0.93344 1.21292 0.92162 1.34218 1.08285 0.95589 1.26017 0.95568 0.96945 1.00840 1.70085 1.08686 1.46980 1.33673 0.85661 0.79378 0.78650 0.78962 1.18744 1.21492 1.16618 1.86181 1.80769 1.38742 1.16670 1.19111 0.95070 0.91420 0.86715 1.21350 1.05693 0.93241 1.00268 1.21174 0.98942 1.01662 0.90618 1.17630 1.06268 0.90734 0.83689 1.91450 1.94785 1.76979 1.49274 1.20783 0.99610 0.92140 0.98975 1.19064 1.03702 0.97493 0.91908 1.20498 0.97494 0.91422 0.84912 1.86309 1.83116 1.37675 1.31799 0.91647 0.91035 0.89194 0.92957 0.95347 0.92632 0.82567 0.81840 0.83178 0.91058 0.93218 0.74652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.50 9.17 71.98 0.66 -3.84 16 2 C 0.09 3.36 2.17 30.59 0.07 3.43 16 3 H 0.07 2.39 6.32 -2.39 -0.02 2.37 16 4 C -0.01 -0.48 3.75 29.85 0.11 -0.37 16 5 C -0.52 -29.34 9.43 25.60 0.24 -29.10 16 6 H 0.03 1.65 7.99 -2.91 -0.02 1.63 16 7 C 0.00 0.15 5.47 84.65 0.46 0.61 16 8 N -0.95 -59.52 13.96 21.45 0.30 -59.22 16 9 Si 0.95 42.67 27.47 68.60 1.88 44.55 16 10 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 11 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 12 H -0.24 -9.95 6.54 99.48 0.65 -9.30 16 13 O -0.31 -12.14 8.98 -92.98 -0.83 -12.98 16 14 C 0.12 4.31 6.57 22.49 0.15 4.46 16 15 C -0.19 -5.51 8.24 22.36 0.18 -5.32 16 16 C -0.11 -2.79 10.02 22.30 0.22 -2.57 16 17 C 0.04 1.05 7.30 22.37 0.16 1.22 16 18 F -0.15 -4.17 17.27 44.97 0.78 -3.39 16 19 C -0.10 -2.98 9.35 22.30 0.21 -2.77 16 20 C -0.12 -4.04 5.89 -19.77 -0.12 -4.16 16 21 C 0.13 4.12 6.91 71.24 0.49 4.61 16 22 O -0.58 -14.95 12.14 -148.98 -1.81 -16.76 16 23 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.07 1.64 6.90 -2.39 -0.02 1.62 16 25 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.05 2.11 7.58 -2.39 -0.02 2.09 16 27 H 0.03 1.25 7.19 -2.39 -0.02 1.23 16 28 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 29 H 0.16 4.04 5.42 -2.91 -0.02 4.02 16 30 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 31 H 0.15 4.39 7.01 -2.91 -0.02 4.37 16 32 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.40 6.33 9.12 -74.06 -0.68 5.65 16 Total: -1.00 -68.89 291.28 3.55 -65.33 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.39 Total: 16.27 kcal Atomic # 6 Polarization: -36.64 SS G_CDS: 2.85 Total: -33.80 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: 0.30 Total: -59.22 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -2.64 Total: -29.74 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.78 Total: -3.39 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.88 Total: 44.55 kcal Total: -68.89 3.55 -65.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695816685.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.106 kcal (2) G-P(sol) polarization free energy of solvation -68.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds