Wall clock time and date at job start Mon Mar 30 2020 06:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47242 * 2 1 4 4 C 1.53003 * 109.46728 * 119.99852 * 2 1 3 5 5 C 1.50698 * 109.46994 * 185.00128 * 4 2 1 6 6 H 1.08006 * 120.00144 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00390 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99293 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00611 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46958 * 59.99859 * 9 7 5 11 11 H 1.48498 * 109.47528 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47012 * 300.00217 * 9 7 5 13 13 O 1.42899 * 109.47014 * 239.99789 * 2 1 3 14 14 C 1.35939 * 117.00027 * 84.95462 * 13 2 1 15 15 C 1.38720 * 120.03302 * 354.52258 * 14 13 2 16 16 C 1.38134 * 119.97353 * 179.70024 * 15 14 13 17 17 C 1.38474 * 120.02369 * 0.56833 * 16 15 14 18 18 F 1.35104 * 119.96758 * 179.74373 * 17 16 15 19 19 C 1.38436 * 120.06408 * 359.72822 * 17 16 15 20 20 C 1.38169 * 120.02991 * 359.97438 * 19 17 16 21 21 C 1.50697 * 120.01613 * 180.02562 * 20 19 17 22 22 O 1.42903 * 109.47128 * 0.02562 * 21 20 19 23 23 H 1.08991 * 109.47364 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47524 * 300.00793 * 1 2 3 25 25 H 1.08998 * 109.47124 * 60.00116 * 1 2 3 26 26 H 1.08994 * 109.47211 * 64.99754 * 4 2 1 27 27 H 1.09006 * 109.47143 * 304.99730 * 4 2 1 28 28 H 0.97004 * 119.99943 * 180.02562 * 8 7 5 29 29 H 1.08006 * 120.01418 * 359.96713 * 15 14 13 30 30 H 1.07998 * 119.98952 * 180.27507 * 16 15 14 31 31 H 1.07993 * 119.98401 * 180.02562 * 19 17 16 32 32 H 1.08999 * 109.47455 * 120.02558 * 21 20 19 33 33 H 1.09005 * 109.46954 * 240.02242 * 21 20 19 34 34 H 0.96697 * 113.99849 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5418 -0.6149 1.3129 6 1 4.0790 -0.0862 0.5393 7 6 4.2303 -1.1935 2.3579 8 7 3.5762 -1.8377 3.2996 9 14 6.0920 -1.0623 2.4364 10 1 6.4853 0.3684 2.4961 11 1 6.5870 -1.7622 3.6490 12 1 6.6837 -1.6883 1.2267 13 8 2.0063 -0.6737 -1.1667 14 6 2.1116 0.0625 -2.3047 15 6 1.6577 1.3731 -2.3282 16 6 1.7709 2.1220 -3.4834 17 6 2.3265 1.5612 -4.6211 18 9 2.4320 2.2931 -5.7518 19 6 2.7743 0.2514 -4.6008 20 6 2.6679 -0.4980 -3.4449 21 6 3.1560 -1.9235 -3.4231 22 8 3.6828 -2.2664 -4.7064 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.7515 -1.7714 1.2057 27 1 1.6053 -0.2616 2.1370 28 1 4.0606 -2.2445 4.0351 29 1 1.2198 1.8092 -1.4424 30 1 1.4216 3.1438 -3.5007 31 1 3.2078 -0.1845 -5.4887 32 1 3.9368 -2.0288 -2.6699 33 1 2.3263 -2.5880 -3.1815 34 1 4.0158 -3.1723 -4.7657 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695816687.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:40 Heat of formation + Delta-G solvation = -121.525656 kcal Electronic energy + Delta-G solvation = -18681.265511 eV Core-core repulsion = 15493.650735 eV Total energy + Delta-G solvation = -3187.614776 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.61032 -40.02438 -37.49703 -36.28874 -33.54761 -31.99975 -31.13753 -29.20514 -27.54164 -25.91765 -23.59490 -22.67941 -21.38776 -20.07585 -17.91934 -17.33534 -16.86066 -16.45050 -15.84654 -15.49051 -14.89159 -14.62946 -14.61676 -14.17233 -14.01884 -13.78918 -13.07695 -12.80162 -12.45665 -12.06291 -11.89039 -11.74157 -11.55058 -11.39474 -11.06562 -10.77768 -10.69068 -10.44527 -10.20323 -10.04466 -9.46334 -9.18892 -8.76930 -8.44850 -7.67798 -6.08041 -4.10018 1.31611 1.47215 3.29768 3.34210 3.37447 3.69861 3.80801 4.21676 4.40445 4.47355 4.86895 5.04536 5.28888 5.35853 5.39955 5.53571 5.58360 5.67328 5.72684 5.81248 5.98411 6.03617 6.14300 6.25966 6.31184 6.46717 6.57155 6.67494 6.95308 7.41020 7.49647 7.67718 7.88013 7.99084 8.28257 8.93485 9.53816 11.03170 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.020487 B = 0.006112 C = 0.005560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.402924 B = 4579.711105 C = 5034.567028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.085 3.915 3 H 0.064 0.936 4 C 0.026 3.974 5 C -0.517 4.517 6 H 0.055 0.945 7 C 0.059 3.941 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.276 1.276 13 O -0.287 6.287 14 C 0.148 3.852 15 C -0.189 4.189 16 C -0.112 4.112 17 C 0.038 3.962 18 F -0.148 7.148 19 C -0.092 4.092 20 C -0.106 4.106 21 C 0.127 3.873 22 O -0.576 6.576 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.049 0.951 26 H 0.029 0.971 27 H 0.039 0.961 28 H 0.262 0.738 29 H 0.142 0.858 30 H 0.132 0.868 31 H 0.145 0.855 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.045 2.838 -12.148 13.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.030 3.970 3 H 0.082 0.918 4 C -0.011 4.011 5 C -0.555 4.555 6 H 0.074 0.926 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.720 3.280 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 O -0.199 6.199 14 C 0.100 3.900 15 C -0.207 4.207 16 C -0.131 4.131 17 C 0.018 3.982 18 F -0.127 7.127 19 C -0.111 4.111 20 C -0.107 4.107 21 C 0.050 3.950 22 O -0.382 6.382 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.068 0.932 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.160 0.840 30 H 0.150 0.850 31 H 0.163 0.837 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -4.152 3.169 -12.084 13.164 hybrid contribution 1.098 -0.125 0.210 1.125 sum -3.054 3.043 -11.874 12.632 Atomic orbital electron populations 1.22424 0.96835 1.02745 1.01588 1.22939 0.91929 0.97243 0.84925 0.91780 1.19267 0.96593 0.96507 0.88684 1.21075 0.91637 1.34739 1.08068 0.92645 1.24968 0.98459 0.95178 0.95625 1.69936 1.35715 1.35776 1.12057 0.86652 0.85635 0.78305 0.77434 1.20226 1.21231 1.20174 1.86277 1.79695 1.37883 1.16037 1.18900 0.93405 0.90384 0.87323 1.21166 1.06155 0.94050 0.99364 1.20884 1.00059 1.00473 0.91715 1.17487 1.06617 0.90767 0.83287 1.91444 1.94796 1.77076 1.49414 1.20693 0.99606 0.91784 0.99038 1.18821 1.03665 0.96562 0.91697 1.20684 0.97943 0.91716 0.84619 1.86356 1.83040 1.35583 1.33218 0.91822 0.91239 0.93219 0.95236 0.94265 0.92822 0.84032 0.84991 0.83735 0.91090 0.91801 0.77071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.83 9.17 37.16 0.34 -2.49 16 2 C 0.08 1.66 2.17 -26.73 -0.06 1.60 16 3 H 0.06 1.22 6.31 -51.93 -0.33 0.89 16 4 C 0.03 0.64 4.68 -27.88 -0.13 0.51 16 5 C -0.52 -14.09 8.88 -34.44 -0.31 -14.39 16 6 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 8 N -0.90 -26.00 13.29 55.43 0.74 -25.26 16 9 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 13 O -0.29 -5.67 8.98 -19.55 -0.18 -5.85 16 14 C 0.15 2.59 6.57 -39.23 -0.26 2.33 16 15 C -0.19 -2.93 8.24 -39.44 -0.33 -3.25 16 16 C -0.11 -1.61 10.02 -39.53 -0.40 -2.00 16 17 C 0.04 0.57 7.30 -39.42 -0.29 0.29 16 18 F -0.15 -2.23 17.27 2.25 0.04 -2.19 16 19 C -0.09 -1.44 9.35 -39.53 -0.37 -1.81 16 20 C -0.11 -1.76 5.89 -104.48 -0.62 -2.37 16 21 C 0.13 1.89 6.91 36.00 0.25 2.14 16 22 O -0.58 -7.39 12.14 -35.23 -0.43 -7.82 16 23 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 24 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.05 0.69 6.91 -51.93 -0.36 0.33 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.14 2.02 5.42 -52.48 -0.28 1.74 16 30 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.14 2.13 7.00 -52.49 -0.37 1.76 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.38 3.04 9.12 45.56 0.42 3.46 16 LS Contribution 294.90 15.07 4.44 4.44 Total: -1.00 -30.26 294.90 -6.08 -36.34 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -3.42 Total: 1.91 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -2.25 Total: -17.91 kcal Atomic # 7 Polarization: -26.00 SS G_CDS: 0.74 Total: -25.26 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -0.60 Total: -13.66 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.26 -6.08 -36.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695816687.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.182 kcal (2) G-P(sol) polarization free energy of solvation -30.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds