Wall clock time and date at job start Mon Mar 30 2020 06:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47242 * 2 1 4 4 C 1.53003 * 109.46728 * 119.99852 * 2 1 3 5 5 C 1.50698 * 109.46994 * 185.00128 * 4 2 1 6 6 H 1.08006 * 120.00144 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00390 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99293 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00611 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46958 * 59.99859 * 9 7 5 11 11 H 1.48498 * 109.47528 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47012 * 300.00217 * 9 7 5 13 13 O 1.42899 * 109.47014 * 239.99789 * 2 1 3 14 14 C 1.35939 * 117.00027 * 84.95462 * 13 2 1 15 15 C 1.38720 * 120.03302 * 354.52258 * 14 13 2 16 16 C 1.38134 * 119.97353 * 179.70024 * 15 14 13 17 17 C 1.38474 * 120.02369 * 0.56833 * 16 15 14 18 18 F 1.35104 * 119.96758 * 179.74373 * 17 16 15 19 19 C 1.38436 * 120.06408 * 359.72822 * 17 16 15 20 20 C 1.38169 * 120.02991 * 359.97438 * 19 17 16 21 21 C 1.50697 * 120.01613 * 180.02562 * 20 19 17 22 22 O 1.42903 * 109.47128 * 0.02562 * 21 20 19 23 23 H 1.08991 * 109.47364 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47524 * 300.00793 * 1 2 3 25 25 H 1.08998 * 109.47124 * 60.00116 * 1 2 3 26 26 H 1.08994 * 109.47211 * 64.99754 * 4 2 1 27 27 H 1.09006 * 109.47143 * 304.99730 * 4 2 1 28 28 H 0.97004 * 119.99943 * 180.02562 * 8 7 5 29 29 H 1.08006 * 120.01418 * 359.96713 * 15 14 13 30 30 H 1.07998 * 119.98952 * 180.27507 * 16 15 14 31 31 H 1.07993 * 119.98401 * 180.02562 * 19 17 16 32 32 H 1.08999 * 109.47455 * 120.02558 * 21 20 19 33 33 H 1.09005 * 109.46954 * 240.02242 * 21 20 19 34 34 H 0.96697 * 113.99849 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5418 -0.6149 1.3129 6 1 4.0790 -0.0862 0.5393 7 6 4.2303 -1.1935 2.3579 8 7 3.5762 -1.8377 3.2996 9 14 6.0920 -1.0623 2.4364 10 1 6.4853 0.3684 2.4961 11 1 6.5870 -1.7622 3.6490 12 1 6.6837 -1.6883 1.2267 13 8 2.0063 -0.6737 -1.1667 14 6 2.1116 0.0625 -2.3047 15 6 1.6577 1.3731 -2.3282 16 6 1.7709 2.1220 -3.4834 17 6 2.3265 1.5612 -4.6211 18 9 2.4320 2.2931 -5.7518 19 6 2.7743 0.2514 -4.6008 20 6 2.6679 -0.4980 -3.4449 21 6 3.1560 -1.9235 -3.4231 22 8 3.6828 -2.2664 -4.7064 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.7515 -1.7714 1.2057 27 1 1.6053 -0.2616 2.1370 28 1 4.0606 -2.2445 4.0351 29 1 1.2198 1.8092 -1.4424 30 1 1.4216 3.1438 -3.5007 31 1 3.2078 -0.1845 -5.4887 32 1 3.9368 -2.0288 -2.6699 33 1 2.3263 -2.5880 -3.1815 34 1 4.0158 -3.1723 -4.7657 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695816687.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:40 Heat of formation + Delta-G solvation = -140.850730 kcal Electronic energy + Delta-G solvation = -18682.103509 eV Core-core repulsion = 15493.650735 eV Total energy + Delta-G solvation = -3188.452774 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.79850 -41.33779 -38.80364 -37.40287 -35.43530 -33.58963 -32.47747 -30.45210 -29.34847 -27.09548 -25.32776 -24.15143 -22.60206 -21.59260 -19.21085 -18.51696 -18.50707 -18.07349 -17.11879 -16.71730 -16.51239 -16.16333 -15.83398 -15.45758 -15.31479 -15.08943 -14.40988 -14.30076 -13.77803 -13.74997 -13.46106 -13.31124 -12.98609 -12.70369 -12.64689 -12.55038 -12.31871 -11.87534 -11.68362 -11.30648 -11.24202 -11.04556 -10.57683 -9.95621 -8.96567 -8.20560 -6.29097 0.13052 0.22742 1.39431 1.40593 1.48757 2.34367 2.40147 2.54750 3.14395 3.17791 3.28427 3.72528 3.90130 4.01549 4.20536 4.27549 4.31029 4.34938 4.46388 4.53701 4.73413 4.84794 4.85966 4.99627 5.11579 5.15456 5.23390 5.34005 5.40749 5.49913 5.77269 5.80562 6.19052 6.58352 6.82887 6.85647 7.38526 8.90707 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.020487 B = 0.006112 C = 0.005560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.402924 B = 4579.711105 C = 5034.567028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.092 3.908 3 H 0.070 0.930 4 C 0.029 3.971 5 C -0.530 4.530 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.954 3.046 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.272 1.272 13 O -0.309 6.309 14 C 0.123 3.877 15 C -0.187 4.187 16 C -0.105 4.105 17 C 0.036 3.964 18 F -0.146 7.146 19 C -0.095 4.095 20 C -0.120 4.120 21 C 0.133 3.867 22 O -0.580 6.580 23 H 0.057 0.943 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.001 0.999 27 H 0.026 0.974 28 H 0.264 0.736 29 H 0.155 0.845 30 H 0.163 0.837 31 H 0.151 0.849 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.893 4.033 -13.310 14.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.037 3.963 3 H 0.088 0.912 4 C -0.008 4.008 5 C -0.568 4.568 6 H 0.070 0.930 7 C -0.191 4.191 8 N -0.570 5.570 9 Si 0.779 3.221 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.197 1.197 13 O -0.223 6.223 14 C 0.076 3.924 15 C -0.206 4.206 16 C -0.123 4.123 17 C 0.017 3.983 18 F -0.125 7.125 19 C -0.114 4.114 20 C -0.121 4.121 21 C 0.056 3.944 22 O -0.389 6.389 23 H 0.076 0.924 24 H 0.100 0.900 25 H 0.092 0.908 26 H 0.020 0.980 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.172 0.828 30 H 0.181 0.819 31 H 0.169 0.831 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -3.997 4.358 -13.269 14.527 hybrid contribution 1.054 -0.496 0.479 1.260 sum -2.943 3.862 -12.790 13.681 Atomic orbital electron populations 1.22332 0.93930 1.02996 1.03372 1.22665 0.94083 0.96325 0.83257 0.91196 1.19117 0.95354 0.95300 0.91057 1.21432 0.93300 1.34328 1.07781 0.92998 1.25790 1.03046 0.94923 0.95374 1.70048 1.37465 1.36743 1.12703 0.85669 0.80220 0.78652 0.77571 1.19330 1.20661 1.19729 1.86203 1.80625 1.38738 1.16686 1.19138 0.95046 0.91381 0.86804 1.21339 1.05659 0.93266 1.00305 1.21163 0.98873 1.01643 0.90636 1.17631 1.06347 0.90680 0.83656 1.91453 1.94753 1.76952 1.49367 1.20775 0.99624 0.92055 0.98912 1.19046 1.03789 0.97419 0.91800 1.20510 0.97548 0.91340 0.85024 1.86310 1.83042 1.37584 1.31951 0.92395 0.89964 0.90816 0.98049 0.95573 0.92722 0.82757 0.81926 0.83142 0.92691 0.91482 0.74665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.13 9.17 71.98 0.66 -4.47 16 2 C 0.09 3.56 2.17 30.60 0.07 3.62 16 3 H 0.07 2.58 6.31 -2.39 -0.02 2.57 16 4 C 0.03 1.43 4.68 29.85 0.14 1.57 16 5 C -0.53 -29.28 8.88 25.60 0.23 -29.05 16 6 H 0.05 2.84 7.74 -2.91 -0.02 2.81 16 7 C 0.01 0.38 5.46 84.65 0.46 0.84 16 8 N -0.93 -54.81 13.29 21.45 0.28 -54.53 16 9 Si 0.95 43.82 29.54 68.60 2.03 45.85 16 10 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 13 O -0.31 -12.23 8.98 -92.87 -0.83 -13.06 16 14 C 0.12 4.20 6.57 22.49 0.15 4.35 16 15 C -0.19 -5.40 8.24 22.36 0.18 -5.21 16 16 C -0.10 -2.68 10.02 22.30 0.22 -2.46 16 17 C 0.04 1.01 7.30 22.37 0.16 1.18 16 18 F -0.15 -4.04 17.27 44.97 0.78 -3.26 16 19 C -0.10 -2.81 9.35 22.30 0.21 -2.60 16 20 C -0.12 -3.85 5.89 -19.77 -0.12 -3.97 16 21 C 0.13 3.92 6.91 71.24 0.49 4.41 16 22 O -0.58 -14.20 12.14 -148.98 -1.81 -16.00 16 23 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 25 H 0.07 1.88 6.91 -2.39 -0.02 1.86 16 26 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 27 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 29 H 0.15 3.99 5.42 -2.91 -0.02 3.97 16 30 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 31 H 0.15 4.20 7.00 -2.91 -0.02 4.18 16 32 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 34 H 0.40 5.85 9.12 -74.06 -0.68 5.18 16 Total: -1.00 -64.46 294.90 3.75 -60.71 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 0.44 Total: 12.09 kcal Atomic # 6 Polarization: -34.65 SS G_CDS: 2.86 Total: -31.79 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: 0.28 Total: -54.53 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -2.64 Total: -29.07 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.78 Total: -3.26 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -64.46 3.75 -60.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695816687.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.140 kcal (2) G-P(sol) polarization free energy of solvation -64.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds