Wall clock time and date at job start Mon Mar 30 2020 06:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47785 * 2 1 4 4 C 1.53006 * 109.47208 * 120.00054 * 2 1 3 5 5 C 1.50699 * 109.47389 * 184.99909 * 4 2 1 6 6 H 1.08007 * 119.99869 * 359.97438 * 5 4 2 7 7 C 1.37869 * 120.00159 * 179.72651 * 5 4 2 8 8 N 1.31519 * 120.00293 * 180.28006 * 7 5 4 9 9 Si 1.86800 * 120.00016 * 0.27121 * 7 5 4 10 10 H 1.48495 * 109.47162 * 90.00186 * 9 7 5 11 11 H 1.48500 * 109.47476 * 210.00524 * 9 7 5 12 12 H 1.48507 * 109.47200 * 330.00432 * 9 7 5 13 13 O 1.42900 * 109.47072 * 239.99916 * 2 1 3 14 14 C 1.35895 * 117.00266 * 85.12400 * 13 2 1 15 15 C 1.38776 * 120.04072 * 354.29575 * 14 13 2 16 16 C 1.38131 * 119.99420 * 179.79025 * 15 14 13 17 17 C 1.38257 * 120.08122 * 0.46802 * 16 15 14 18 18 C 1.50700 * 119.95796 * 179.76600 * 17 16 15 19 19 O 1.42898 * 109.47109 * 0.02562 * 18 17 16 20 20 C 1.38475 * 120.08375 * 359.78598 * 17 16 15 21 21 F 1.35098 * 119.99809 * 179.97438 * 20 17 16 22 22 C 1.38390 * 120.00409 * 359.97438 * 20 17 16 23 23 H 1.09006 * 109.46719 * 60.00338 * 1 2 3 24 24 H 1.08998 * 109.47085 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47163 * 300.00096 * 1 2 3 26 26 H 1.09000 * 109.47116 * 64.99669 * 4 2 1 27 27 H 1.08992 * 109.46698 * 304.99943 * 4 2 1 28 28 H 0.96994 * 119.99752 * 179.97438 * 8 7 5 29 29 H 1.07995 * 120.00016 * 0.02816 * 15 14 13 30 30 H 1.08003 * 119.96024 * 180.20889 * 16 15 14 31 31 H 1.09006 * 109.46789 * 120.02145 * 18 17 16 32 32 H 1.09002 * 109.46605 * 240.01892 * 18 17 16 33 33 H 0.96698 * 113.99866 * 179.97438 * 19 18 17 34 34 H 1.08004 * 120.03762 * 180.02562 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3128 6 1 4.0791 -0.0862 0.5392 7 6 4.2299 -1.1883 2.3610 8 7 5.5402 -1.0908 2.4194 9 14 3.3010 -2.1034 3.6986 10 1 3.1756 -3.5347 3.3236 11 1 4.0411 -1.9906 4.9811 12 1 1.9476 -1.5122 3.8546 13 8 2.0063 -0.6737 -1.1668 14 6 2.1149 0.0631 -2.3035 15 6 1.6598 1.3739 -2.3280 16 6 1.7746 2.1233 -3.4826 17 6 2.3339 1.5661 -4.6176 18 6 2.4530 2.3846 -5.8774 19 8 1.9236 3.6918 -5.6479 20 6 2.7843 0.2568 -4.5985 21 9 3.3301 -0.2861 -5.7087 22 6 2.6755 -0.4956 -3.4421 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.7516 -1.7715 1.2056 27 1 1.6054 -0.2618 2.1369 28 1 6.0241 -1.4939 3.1571 29 1 1.2194 1.8092 -1.4432 30 1 1.4233 3.1444 -3.5000 31 1 3.5023 2.4624 -6.1622 32 1 1.8938 1.9014 -6.6787 33 1 1.9680 4.2749 -6.4181 34 1 3.0271 -1.5167 -3.4264 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695858427.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:58 Heat of formation + Delta-G solvation = -138.586737 kcal Electronic energy + Delta-G solvation = -18416.241392 eV Core-core repulsion = 15227.886792 eV Total energy + Delta-G solvation = -3188.354600 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.04520 -41.25612 -39.06358 -37.29983 -35.40885 -33.73916 -31.74527 -31.62428 -29.79237 -26.73840 -24.93887 -24.21400 -22.86607 -21.45547 -19.58114 -18.93436 -18.50331 -17.33446 -17.09901 -16.98417 -16.82419 -16.35002 -15.95895 -15.59058 -15.33028 -14.94339 -14.72045 -14.23815 -14.03021 -13.86107 -13.69730 -13.42323 -12.99871 -12.69415 -12.49416 -12.24731 -12.17915 -11.87703 -11.71385 -11.39089 -11.34387 -10.99877 -10.77322 -9.93764 -9.09588 -8.28370 -6.32988 0.06830 0.24641 1.37271 1.39105 1.50104 2.19792 2.36563 2.53779 3.07196 3.14658 3.32585 3.77167 3.87845 4.01243 4.07136 4.14553 4.22029 4.36599 4.45470 4.51197 4.51598 4.81802 4.93993 4.98055 5.01349 5.07482 5.20333 5.26423 5.33046 5.36286 5.61103 5.73261 6.23845 6.53488 6.73517 6.92743 7.29948 8.88995 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.030805 B = 0.004882 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.725070 B = 5733.999612 C = 6032.773248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.092 3.908 3 H 0.067 0.933 4 C -0.011 4.011 5 C -0.525 4.525 6 H 0.024 0.976 7 C 0.002 3.998 8 N -0.954 5.954 9 Si 0.953 3.047 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.236 1.236 13 O -0.316 6.316 14 C 0.152 3.848 15 C -0.224 4.224 16 C -0.027 4.027 17 C -0.179 4.179 18 C 0.133 3.867 19 O -0.580 6.580 20 C 0.136 3.864 21 F -0.134 7.134 22 C -0.214 4.214 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.091 0.909 26 H 0.026 0.974 27 H 0.057 0.943 28 H 0.266 0.734 29 H 0.148 0.852 30 H 0.160 0.840 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.405 0.595 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.782 7.289 -14.350 19.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.037 3.963 3 H 0.085 0.915 4 C -0.048 4.048 5 C -0.563 4.563 6 H 0.042 0.958 7 C -0.194 4.194 8 N -0.595 5.595 9 Si 0.776 3.224 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.159 1.159 13 O -0.230 6.230 14 C 0.105 3.895 15 C -0.242 4.242 16 C -0.045 4.045 17 C -0.180 4.180 18 C 0.056 3.944 19 O -0.390 6.390 20 C 0.117 3.883 21 F -0.113 7.113 22 C -0.233 4.233 23 H 0.090 0.910 24 H 0.084 0.916 25 H 0.110 0.890 26 H 0.044 0.956 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.166 0.834 30 H 0.177 0.823 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.256 0.744 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.689 6.781 -13.666 19.219 hybrid contribution 0.706 -0.477 0.025 0.852 sum -10.983 6.304 -13.641 18.613 Atomic orbital electron populations 1.22362 0.92910 1.03547 1.03855 1.22600 0.94591 0.96238 0.82867 0.91546 1.19726 0.94606 0.97026 0.93483 1.21305 0.92247 1.34704 1.08047 0.95775 1.26048 0.95627 0.96897 1.00868 1.70086 1.08798 1.47092 1.33488 0.85622 0.80049 0.79154 0.77588 1.19677 1.21013 1.15857 1.86176 1.80650 1.39076 1.17083 1.19028 0.92853 0.90983 0.86602 1.21639 1.07577 0.93673 1.01345 1.20823 0.93757 1.00251 0.89693 1.19871 1.06220 0.92935 0.98984 1.20599 0.98618 0.82991 0.92219 1.86357 1.85313 1.23876 1.43425 1.16925 0.97572 0.91450 0.82394 1.91472 1.83318 1.86226 1.50244 1.20321 1.08736 1.02625 0.91632 0.91028 0.91639 0.89037 0.95602 0.92546 0.92551 0.83395 0.82297 0.91402 0.90751 0.74384 0.84536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.80 9.17 71.98 0.66 -4.14 16 2 C 0.09 3.58 2.17 30.60 0.07 3.64 16 3 H 0.07 2.57 6.31 -2.39 -0.02 2.55 16 4 C -0.01 -0.52 3.75 29.85 0.11 -0.41 16 5 C -0.53 -30.69 9.43 25.60 0.24 -30.44 16 6 H 0.02 1.59 7.99 -2.91 -0.02 1.56 16 7 C 0.00 0.11 5.47 84.65 0.46 0.57 16 8 N -0.95 -60.99 13.96 21.44 0.30 -60.69 16 9 Si 0.95 43.92 27.47 68.60 1.88 45.80 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.24 -9.63 6.54 99.48 0.65 -8.98 16 13 O -0.32 -13.44 9.55 -92.37 -0.88 -14.32 16 14 C 0.15 5.65 6.60 22.50 0.15 5.79 16 15 C -0.22 -6.98 8.25 22.37 0.18 -6.79 16 16 C -0.03 -0.75 9.37 22.25 0.21 -0.54 16 17 C -0.18 -4.79 5.89 -19.80 -0.12 -4.90 16 18 C 0.13 2.52 7.01 71.24 0.50 3.02 16 19 O -0.58 -9.63 12.13 -148.98 -1.81 -11.44 16 20 C 0.14 4.12 7.24 22.36 0.16 4.29 16 21 F -0.13 -3.81 16.80 44.97 0.76 -3.05 16 22 C -0.21 -7.49 9.97 22.41 0.22 -7.27 16 23 H 0.07 1.78 6.91 -2.38 -0.02 1.76 16 24 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.03 1.18 7.58 -2.39 -0.02 1.16 16 27 H 0.06 2.39 7.19 -2.39 -0.02 2.37 16 28 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 29 H 0.15 4.18 5.42 -2.91 -0.02 4.17 16 30 H 0.16 3.71 7.00 -2.91 -0.02 3.69 16 31 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.40 2.44 9.12 -74.06 -0.68 1.76 16 34 H 0.14 4.78 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -71.96 291.44 3.49 -68.47 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.39 Total: 12.41 kcal Atomic # 6 Polarization: -40.03 SS G_CDS: 2.85 Total: -37.18 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: 0.30 Total: -60.69 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -2.69 Total: -25.76 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.76 Total: -3.05 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.88 Total: 45.80 kcal Total: -71.96 3.49 -68.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695858427.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.118 kcal (2) G-P(sol) polarization free energy of solvation -71.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds