Wall clock time and date at job start Mon Mar 30 2020 06:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99792 * 2 1 4 4 H 1.48496 * 109.47092 * 270.00347 * 3 2 1 5 5 H 1.48501 * 109.47291 * 30.00164 * 3 2 1 6 6 H 1.48496 * 109.47110 * 150.00164 * 3 2 1 7 7 C 1.37876 * 120.00435 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00241 * 182.27198 * 7 2 1 9 9 C 1.50697 * 119.99480 * 2.26957 * 7 2 1 10 10 C 1.53003 * 115.56328 * 80.73203 * 9 7 2 11 11 S 1.80997 * 109.47030 * 39.69071 * 10 9 7 12 12 C 1.76196 * 99.99902 * 180.02562 * 11 10 9 13 13 N 1.29656 * 119.84916 * 359.72712 * 12 11 10 14 14 C 1.47467 * 119.89985 * 184.16233 * 13 12 11 15 15 C 1.52435 * 109.96712 * 289.43831 * 14 13 12 16 16 C 1.52698 * 110.83140 * 85.38776 * 15 14 13 17 17 C 1.51452 * 112.35870 * 293.06645 * 16 15 14 18 18 N 1.37488 * 119.84509 * 180.02562 * 12 11 10 19 19 C 1.53002 * 117.50201 * 295.03631 * 9 7 2 20 20 C 1.53003 * 60.03194 * 252.50372 * 19 9 7 21 21 H 0.97005 * 120.00435 * 355.00225 * 1 2 3 22 22 H 1.08998 * 109.47307 * 159.68869 * 10 9 7 23 23 H 1.09004 * 109.46750 * 279.69352 * 10 9 7 24 24 H 1.08996 * 109.39370 * 169.23685 * 14 13 12 25 25 H 1.09005 * 109.25379 * 49.53794 * 14 13 12 26 26 H 1.09007 * 109.20094 * 325.04211 * 15 14 13 27 27 H 1.08999 * 109.20281 * 205.73980 * 15 14 13 28 28 H 1.08996 * 108.90451 * 172.32258 * 16 15 14 29 29 H 1.09004 * 108.82502 * 53.75837 * 16 15 14 30 30 H 1.09000 * 109.37947 * 302.03786 * 17 16 15 31 31 H 1.09000 * 109.37856 * 182.38129 * 17 16 15 32 32 H 0.96994 * 120.89671 * 68.98921 * 18 12 11 33 33 H 1.08999 * 117.49675 * 0.02562 * 19 9 7 34 34 H 1.09002 * 117.49679 * 144.99839 * 19 9 7 35 35 H 1.08996 * 117.49876 * 107.50677 * 20 19 9 36 36 H 1.09007 * 117.49263 * 252.51881 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6528 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0839 -1.1943 0.0365 9 6 1.2520 -2.4985 -0.0528 10 6 0.7765 -2.9313 -1.4412 11 16 2.0580 -2.5539 -2.6625 12 6 1.2680 -3.1379 -4.1252 13 7 0.0835 -3.6604 -4.0542 14 6 -0.5410 -4.2327 -5.2613 15 6 -0.9222 -3.1179 -6.2286 16 6 0.2621 -2.7398 -7.1153 17 6 1.3865 -2.0960 -6.3311 18 7 1.9131 -3.0430 -5.3356 19 6 0.3598 -2.8477 1.1401 20 6 1.6752 -3.5986 0.9239 21 1 -0.4851 0.8369 0.0732 22 1 0.5801 -4.0034 -1.4402 23 1 -0.1374 -2.3945 -1.6959 24 1 -1.4349 -4.7880 -4.9777 25 1 0.1651 -4.9072 -5.7459 26 1 -1.2386 -2.2430 -5.6606 27 1 -1.7472 -3.4546 -6.8564 28 1 -0.0785 -2.0430 -7.8811 29 1 0.6399 -3.6399 -7.6003 30 1 1.0107 -1.2082 -5.8226 31 1 2.1855 -1.8084 -7.0145 32 1 2.6940 -3.5853 -5.5277 33 1 0.3168 -2.1337 1.9625 34 1 -0.5662 -3.3854 0.9356 35 1 2.4979 -3.3788 1.6042 36 1 1.6146 -4.6302 0.5769 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697688319.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:24 Heat of formation + Delta-G solvation = 41.989702 kcal Electronic energy + Delta-G solvation = -16873.618981 eV Core-core repulsion = 14291.600690 eV Total energy + Delta-G solvation = -2582.018291 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.59882 -36.50336 -33.28724 -33.06135 -31.91815 -27.80220 -26.69362 -25.32822 -24.77445 -21.05877 -20.81551 -19.78389 -19.09408 -17.47284 -16.20107 -15.94351 -14.96403 -14.56131 -14.44505 -13.77721 -13.61537 -13.41142 -13.13697 -12.94984 -12.26990 -12.11959 -11.86951 -11.50896 -10.93029 -10.88651 -10.85455 -10.66378 -10.46993 -10.19249 -9.89173 -9.74204 -9.48954 -9.03085 -8.80119 -8.43410 -8.03754 -7.97592 -6.79449 -6.00228 -4.07240 2.28575 2.51984 3.33064 3.39670 3.40852 3.43405 4.03214 4.44041 4.77415 5.00411 5.14589 5.30279 5.37048 5.43139 5.59262 5.62955 5.70854 5.87096 5.94217 6.04656 6.11713 6.23309 6.30935 6.37365 6.57751 6.62534 6.79694 7.00088 7.14990 7.19239 7.41571 7.54175 7.90324 7.98934 8.32461 8.41008 8.92937 9.58335 11.07536 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.022703 B = 0.006970 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.034077 B = 4016.302692 C = 4584.235858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.079 3.921 3 Si 0.887 3.113 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.491 4.491 8 H 0.063 0.937 9 C 0.048 3.952 10 C -0.032 4.032 11 S -0.038 6.038 12 C 0.370 3.630 13 N -0.557 5.557 14 C 0.058 3.942 15 C -0.128 4.128 16 C -0.142 4.142 17 C 0.137 3.863 18 N -0.791 5.791 19 C -0.149 4.149 20 C -0.209 4.209 21 H 0.260 0.740 22 H 0.058 0.942 23 H 0.088 0.912 24 H 0.073 0.927 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.397 0.603 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.245 -5.427 -11.367 12.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.125 4.125 3 Si 0.715 3.285 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.530 4.530 8 H 0.081 0.919 9 C 0.046 3.954 10 C -0.182 4.182 11 S 0.196 5.804 12 C -0.015 4.015 13 N -0.283 5.283 14 C -0.075 4.075 15 C -0.167 4.167 16 C -0.181 4.181 17 C 0.010 3.990 18 N -0.443 5.443 19 C -0.188 4.188 20 C -0.246 4.246 21 H 0.070 0.930 22 H 0.077 0.923 23 H 0.107 0.893 24 H 0.092 0.908 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.233 0.767 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.287 -4.897 -10.747 11.880 hybrid contribution -0.328 0.200 -1.065 1.132 sum 0.959 -4.697 -11.811 12.747 Atomic orbital electron populations 1.69990 1.05891 1.26758 1.48260 1.24925 0.94723 0.98791 0.94085 0.86672 0.79971 0.83531 0.78358 1.20303 1.21351 1.19842 1.20349 0.92481 0.88368 1.51804 0.91917 1.18613 0.98447 0.93312 0.84984 1.23067 0.98294 1.00966 0.95857 1.86296 1.25496 1.73329 0.95278 1.25128 0.91766 0.93144 0.91487 1.73353 1.11597 1.15124 1.28193 1.22032 0.98916 0.96190 0.90399 1.21613 0.97592 0.99683 0.97774 1.21784 0.96707 1.01127 0.98481 1.20960 0.95640 0.91777 0.90578 1.44678 1.36695 1.49785 1.13152 1.22553 0.91667 1.01768 1.02854 1.23072 0.99275 0.95707 1.06551 0.92997 0.92302 0.89302 0.90843 0.93358 0.91588 0.91832 0.91640 0.92205 0.91663 0.90916 0.76657 0.89819 0.91848 0.90334 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.44 12.90 55.43 0.72 -23.72 16 2 C 0.08 2.13 5.44 -17.82 -0.10 2.04 16 3 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.49 -13.05 7.52 -34.44 -0.26 -13.31 16 8 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.05 1.18 1.64 -155.62 -0.25 0.93 16 10 C -0.03 -0.75 4.96 37.16 0.18 -0.57 16 11 S -0.04 -0.79 21.12 -107.50 -2.27 -3.06 16 12 C 0.37 6.75 7.14 -88.79 -0.63 6.12 16 13 N -0.56 -10.49 9.47 -60.78 -0.58 -11.06 16 14 C 0.06 0.88 6.38 -3.80 -0.02 0.86 16 15 C -0.13 -1.70 5.74 -27.18 -0.16 -1.85 16 16 C -0.14 -1.60 5.63 -27.67 -0.16 -1.75 16 17 C 0.14 1.72 6.57 -4.47 -0.03 1.69 16 18 N -0.79 -11.44 4.98 -61.54 -0.31 -11.75 16 19 C -0.15 -3.49 9.49 -26.73 -0.25 -3.74 16 20 C -0.21 -4.56 9.89 -26.69 -0.26 -4.82 16 21 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 22 H 0.06 1.30 7.93 -51.92 -0.41 0.88 16 23 H 0.09 2.28 8.13 -51.91 -0.42 1.86 16 24 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.05 0.70 7.69 -51.93 -0.40 0.30 16 26 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.63 8.01 -51.93 -0.42 0.22 16 30 H 0.06 0.95 8.05 -51.93 -0.42 0.53 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.40 4.97 8.96 -40.82 -0.37 4.60 16 33 H 0.08 2.07 8.14 -51.93 -0.42 1.65 16 34 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 36 H 0.07 1.31 8.08 -51.92 -0.42 0.89 16 LS Contribution 307.78 15.07 4.64 4.64 Total: -1.00 -28.16 307.78 -10.54 -38.71 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -5.78 Total: 4.63 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -1.94 Total: -14.41 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: -0.17 Total: -46.53 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -0.79 SS G_CDS: -2.27 Total: -3.06 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.16 -10.54 -38.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697688319.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.695 kcal (2) G-P(sol) polarization free energy of solvation -28.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds