Wall clock time and date at job start Mon Mar 30 2020 06:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99792 * 2 1 4 4 H 1.48496 * 109.47092 * 270.00347 * 3 2 1 5 5 H 1.48501 * 109.47291 * 30.00164 * 3 2 1 6 6 H 1.48496 * 109.47110 * 150.00164 * 3 2 1 7 7 C 1.37876 * 120.00435 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00241 * 182.27198 * 7 2 1 9 9 C 1.50697 * 119.99480 * 2.26957 * 7 2 1 10 10 C 1.53003 * 115.56328 * 80.73203 * 9 7 2 11 11 S 1.80997 * 109.47030 * 39.69071 * 10 9 7 12 12 C 1.76196 * 99.99902 * 180.02562 * 11 10 9 13 13 N 1.29656 * 119.84916 * 359.72712 * 12 11 10 14 14 C 1.47467 * 119.89985 * 184.16233 * 13 12 11 15 15 C 1.52435 * 109.96712 * 289.43831 * 14 13 12 16 16 C 1.52698 * 110.83140 * 85.38776 * 15 14 13 17 17 C 1.51452 * 112.35870 * 293.06645 * 16 15 14 18 18 N 1.37488 * 119.84509 * 180.02562 * 12 11 10 19 19 C 1.53002 * 117.50201 * 295.03631 * 9 7 2 20 20 C 1.53003 * 60.03194 * 252.50372 * 19 9 7 21 21 H 0.97005 * 120.00435 * 355.00225 * 1 2 3 22 22 H 1.08998 * 109.47307 * 159.68869 * 10 9 7 23 23 H 1.09004 * 109.46750 * 279.69352 * 10 9 7 24 24 H 1.08996 * 109.39370 * 169.23685 * 14 13 12 25 25 H 1.09005 * 109.25379 * 49.53794 * 14 13 12 26 26 H 1.09007 * 109.20094 * 325.04211 * 15 14 13 27 27 H 1.08999 * 109.20281 * 205.73980 * 15 14 13 28 28 H 1.08996 * 108.90451 * 172.32258 * 16 15 14 29 29 H 1.09004 * 108.82502 * 53.75837 * 16 15 14 30 30 H 1.09000 * 109.37947 * 302.03786 * 17 16 15 31 31 H 1.09000 * 109.37856 * 182.38129 * 17 16 15 32 32 H 0.96994 * 120.89671 * 68.98921 * 18 12 11 33 33 H 1.08999 * 117.49675 * 0.02562 * 19 9 7 34 34 H 1.09002 * 117.49679 * 144.99839 * 19 9 7 35 35 H 1.08996 * 117.49876 * 107.50677 * 20 19 9 36 36 H 1.09007 * 117.49263 * 252.51881 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6528 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0839 -1.1943 0.0365 9 6 1.2520 -2.4985 -0.0528 10 6 0.7765 -2.9313 -1.4412 11 16 2.0580 -2.5539 -2.6625 12 6 1.2680 -3.1379 -4.1252 13 7 0.0835 -3.6604 -4.0542 14 6 -0.5410 -4.2327 -5.2613 15 6 -0.9222 -3.1179 -6.2286 16 6 0.2621 -2.7398 -7.1153 17 6 1.3865 -2.0960 -6.3311 18 7 1.9131 -3.0430 -5.3356 19 6 0.3598 -2.8477 1.1401 20 6 1.6752 -3.5986 0.9239 21 1 -0.4851 0.8369 0.0732 22 1 0.5801 -4.0034 -1.4402 23 1 -0.1374 -2.3945 -1.6959 24 1 -1.4349 -4.7880 -4.9777 25 1 0.1651 -4.9072 -5.7459 26 1 -1.2386 -2.2430 -5.6606 27 1 -1.7472 -3.4546 -6.8564 28 1 -0.0785 -2.0430 -7.8811 29 1 0.6399 -3.6399 -7.6003 30 1 1.0107 -1.2082 -5.8226 31 1 2.1855 -1.8084 -7.0145 32 1 2.6940 -3.5853 -5.5277 33 1 0.3168 -2.1337 1.9625 34 1 -0.5662 -3.3854 0.9356 35 1 2.4979 -3.3788 1.6042 36 1 1.6146 -4.6302 0.5769 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697688319.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:23 Heat of formation + Delta-G solvation = 25.730832 kcal Electronic energy + Delta-G solvation = -16874.324018 eV Core-core repulsion = 14291.600690 eV Total energy + Delta-G solvation = -2582.723328 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.80153 -38.38141 -34.45492 -34.25913 -33.96226 -29.52124 -28.02586 -27.27369 -26.01032 -22.89330 -21.91338 -21.26571 -20.77266 -18.88254 -17.87260 -17.33074 -16.62015 -16.31117 -15.66355 -15.49573 -15.10390 -14.84832 -14.53662 -14.23311 -13.97273 -13.53776 -13.31976 -12.96828 -12.88457 -12.80743 -12.34567 -12.02336 -11.93627 -11.71728 -11.51165 -11.33604 -11.11553 -10.74123 -10.42284 -10.37476 -9.85565 -9.26108 -8.44147 -8.05349 -6.16897 0.77153 1.09720 1.43625 1.46507 1.54014 1.72851 2.46813 2.86724 3.24844 3.50105 3.75563 4.01142 4.14377 4.25847 4.33908 4.45408 4.50494 4.59132 4.62491 4.73002 4.76671 4.86668 5.00182 5.02200 5.04654 5.09200 5.14865 5.26999 5.31532 5.55269 5.65973 5.81750 5.97817 6.40113 6.86692 6.89787 6.98194 7.50924 9.01985 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.022703 B = 0.006970 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.034077 B = 4016.302692 C = 4584.235858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.036 3.964 3 Si 0.940 3.060 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.495 4.495 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.014 4.014 11 S -0.066 6.066 12 C 0.376 3.624 13 N -0.584 5.584 14 C 0.055 3.945 15 C -0.126 4.126 16 C -0.135 4.135 17 C 0.133 3.867 18 N -0.781 5.781 19 C -0.154 4.154 20 C -0.183 4.183 21 H 0.258 0.742 22 H 0.064 0.936 23 H 0.052 0.948 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.036 0.964 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.039 0.961 31 H 0.106 0.894 32 H 0.408 0.592 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.026 -6.095 -13.308 14.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.534 4.534 8 H 0.073 0.927 9 C 0.018 3.982 10 C -0.163 4.163 11 S 0.166 5.834 12 C -0.012 4.012 13 N -0.310 5.310 14 C -0.078 4.078 15 C -0.164 4.164 16 C -0.174 4.174 17 C 0.007 3.993 18 N -0.434 5.434 19 C -0.194 4.194 20 C -0.220 4.220 21 H 0.067 0.933 22 H 0.082 0.918 23 H 0.071 0.929 24 H 0.093 0.907 25 H 0.079 0.921 26 H 0.055 0.945 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.057 0.943 31 H 0.124 0.876 32 H 0.247 0.753 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.081 -5.571 -12.694 14.018 hybrid contribution -0.600 0.339 -0.543 0.877 sum 1.482 -5.232 -13.237 14.311 Atomic orbital electron populations 1.70098 1.07044 1.27155 1.49727 1.25543 0.95351 1.01526 0.94087 0.85836 0.79078 0.80253 0.78240 1.20231 1.21136 1.19174 1.20507 0.92193 0.89567 1.51152 0.92748 1.18751 0.99518 0.93885 0.86063 1.22700 0.97305 1.00460 0.95872 1.86146 1.25414 1.74888 0.96907 1.24561 0.91880 0.93239 0.91487 1.73259 1.12004 1.14808 1.30883 1.22168 0.98965 0.96943 0.89679 1.21605 0.99449 0.97727 0.97650 1.21738 0.95220 1.02291 0.98188 1.21161 0.97315 0.90495 0.90356 1.44691 1.36945 1.49962 1.11842 1.22458 0.92868 1.02066 1.01967 1.23078 0.98041 0.96147 1.04704 0.93268 0.91757 0.92887 0.90704 0.92080 0.94483 0.89415 0.89355 0.90523 0.94267 0.87599 0.75307 0.91738 0.91114 0.89924 0.89182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.74 12.90 21.45 0.28 -51.46 16 2 C 0.04 1.97 5.44 84.65 0.46 2.43 16 3 Si 0.94 43.54 29.54 68.60 2.03 45.57 16 4 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 7 C -0.50 -26.63 7.52 25.60 0.19 -26.44 16 8 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 9 C 0.02 0.96 1.64 -52.90 -0.09 0.87 16 10 C -0.01 -0.64 4.96 71.98 0.36 -0.29 16 11 S -0.07 -2.80 21.12 -56.49 -1.19 -3.99 16 12 C 0.38 13.46 7.14 179.71 1.28 14.75 16 13 N -0.58 -21.72 9.47 -346.21 -3.28 -25.00 16 14 C 0.06 1.59 6.38 86.01 0.55 2.14 16 15 C -0.13 -3.07 5.74 30.31 0.17 -2.90 16 16 C -0.14 -2.59 5.63 29.99 0.17 -2.42 16 17 C 0.13 2.99 6.57 85.75 0.56 3.56 16 18 N -0.78 -21.06 4.98 -348.62 -1.74 -22.80 16 19 C -0.15 -7.28 9.49 30.60 0.29 -6.99 16 20 C -0.18 -7.80 9.89 30.62 0.30 -7.50 16 21 H 0.26 14.26 8.32 -92.70 -0.77 13.49 16 22 H 0.06 2.85 7.93 -2.40 -0.02 2.83 16 23 H 0.05 2.82 8.13 -2.39 -0.02 2.80 16 24 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.06 1.61 7.69 -2.38 -0.02 1.59 16 26 H 0.04 1.12 8.09 -2.38 -0.02 1.10 16 27 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.08 1.27 8.01 -2.39 -0.02 1.25 16 30 H 0.04 1.10 8.05 -2.39 -0.02 1.08 16 31 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.41 9.19 8.96 -92.71 -0.83 8.36 16 33 H 0.06 3.26 8.14 -2.39 -0.02 3.24 16 34 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 35 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 36 H 0.09 3.40 8.08 -2.38 -0.02 3.38 16 Total: -1.00 -61.21 307.78 0.58 -60.63 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.23 Total: 19.85 kcal Atomic # 6 Polarization: -27.05 SS G_CDS: 4.25 Total: -22.80 kcal Atomic # 7 Polarization: -94.52 SS G_CDS: -4.74 Total: -99.26 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: -2.80 SS G_CDS: -1.19 Total: -3.99 kcal Total: -61.21 0.58 -60.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697688319.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.359 kcal (2) G-P(sol) polarization free energy of solvation -61.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds