Wall clock time and date at job start Mon Mar 30 2020 06:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47221 * 2 1 4 4 C 1.53000 * 109.46850 * 239.99678 * 2 1 3 5 5 C 1.50706 * 109.46942 * 175.00099 * 4 2 1 6 6 H 1.08002 * 119.99801 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00097 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00024 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00029 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47411 * 89.99676 * 9 7 5 11 11 H 1.48495 * 109.47393 * 210.00150 * 9 7 5 12 12 H 1.48505 * 109.47279 * 329.99784 * 9 7 5 13 13 N 1.46905 * 109.47094 * 119.99847 * 2 1 3 14 14 C 1.46901 * 110.99870 * 274.99984 * 13 2 1 15 15 C 1.50697 * 109.46943 * 180.02562 * 14 13 2 16 16 C 1.38235 * 120.40907 * 269.72397 * 15 14 13 17 17 N 1.31852 * 120.79125 * 179.70505 * 16 15 14 18 18 C 1.31872 * 121.73973 * 0.58236 * 17 16 15 19 19 C 1.38313 * 120.74516 * 359.70621 * 18 17 16 20 20 Cl 1.73594 * 120.43106 * 179.97438 * 19 18 17 21 21 C 1.38608 * 120.41619 * 90.00011 * 15 14 13 22 22 H 1.08999 * 109.47123 * 59.99965 * 1 2 3 23 23 H 1.08997 * 109.47624 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47163 * 300.00582 * 1 2 3 25 25 H 1.08994 * 109.47174 * 295.00027 * 4 2 1 26 26 H 1.08993 * 109.47332 * 55.00709 * 4 2 1 27 27 H 0.96997 * 119.99745 * 180.02562 * 8 7 5 28 28 H 1.00901 * 110.99869 * 151.04696 * 13 2 1 29 29 H 1.09004 * 109.47031 * 299.99620 * 14 13 2 30 30 H 1.08995 * 109.47111 * 59.99900 * 14 13 2 31 31 H 1.08001 * 119.60234 * 359.96792 * 16 15 14 32 32 H 1.08000 * 119.63097 * 179.72798 * 18 17 16 33 33 H 1.08001 * 120.78941 * 359.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2303 -1.1928 -2.3583 8 7 5.5410 -1.1004 -2.4134 9 14 3.3013 -2.1067 -3.6965 10 1 2.9405 -1.1609 -4.7831 11 1 4.1595 -3.1871 -4.2454 12 1 2.0651 -2.6988 -3.1250 13 7 2.0197 -0.6925 1.1995 14 6 2.0824 0.2227 2.3469 15 6 2.5885 -0.5214 3.5557 16 6 1.7035 -1.1504 4.4113 17 7 2.1384 -1.8084 5.4680 18 6 3.4226 -1.8845 5.7577 19 6 4.3668 -1.2754 4.9510 20 17 6.0552 -1.3803 5.3405 21 6 3.9466 -0.5788 3.8267 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.7516 -1.7715 -1.2055 26 1 1.6054 -0.2618 -2.1369 27 1 6.0253 -1.5066 -3.1492 28 1 2.9173 -1.1205 1.0288 29 1 2.7589 1.0462 2.1182 30 1 1.0871 0.6164 2.5525 31 1 0.6434 -1.1059 4.2095 32 1 3.7409 -2.4289 6.6344 33 1 4.6608 -0.0934 3.1780 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703024279.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:46 Heat of formation + Delta-G solvation = -4.270553 kcal Electronic energy + Delta-G solvation = -16079.470079 eV Core-core repulsion = 13357.568993 eV Total energy + Delta-G solvation = -2721.901087 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.31666 -38.36549 -37.64780 -35.17323 -34.10743 -32.68862 -31.03566 -29.58728 -26.58021 -24.70846 -24.51822 -22.72935 -21.08646 -18.96891 -18.25570 -17.82829 -17.04061 -16.41897 -16.34974 -15.92159 -15.22433 -14.79081 -14.62565 -14.24405 -13.84057 -13.78753 -13.52939 -13.43938 -13.05440 -12.92235 -12.56662 -12.41159 -12.31780 -12.05536 -11.73029 -11.32670 -11.24134 -10.78206 -10.74197 -10.61904 -9.91639 -9.25751 -8.28700 -6.31571 -0.11842 0.05595 0.96960 1.35932 1.38895 1.49983 2.36644 2.58068 3.06358 3.37041 3.52601 3.69847 3.75326 3.88651 4.00150 4.27001 4.38388 4.56628 4.65893 4.70970 4.72865 4.86885 5.06276 5.12393 5.15965 5.25762 5.35818 5.46556 5.53382 5.68848 6.22313 6.31823 6.49573 6.74806 6.77929 7.33240 8.87123 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.020333 B = 0.005544 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.720018 B = 5049.618953 C = 6072.463767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.098 3.902 3 H 0.027 0.973 4 C -0.015 4.015 5 C -0.523 4.523 6 H 0.035 0.965 7 C 0.008 3.992 8 N -0.949 5.949 9 Si 0.946 3.054 10 H -0.268 1.268 11 H -0.289 1.289 12 H -0.248 1.248 13 N -0.680 5.680 14 C 0.103 3.897 15 C -0.115 4.115 16 C 0.121 3.879 17 N -0.485 5.485 18 C 0.108 3.892 19 C -0.093 4.093 20 Cl -0.054 7.054 21 C -0.071 4.071 22 H 0.059 0.941 23 H 0.055 0.945 24 H 0.066 0.934 25 H 0.022 0.978 26 H 0.023 0.977 27 H 0.264 0.736 28 H 0.341 0.659 29 H 0.032 0.968 30 H 0.105 0.895 31 H 0.184 0.816 32 H 0.186 0.814 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.426 0.962 14.304 16.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.012 4.012 3 H 0.045 0.955 4 C -0.053 4.053 5 C -0.561 4.561 6 H 0.054 0.946 7 C -0.189 4.189 8 N -0.589 5.589 9 Si 0.770 3.230 10 H -0.194 1.194 11 H -0.215 1.215 12 H -0.172 1.172 13 N -0.312 5.312 14 C -0.026 4.026 15 C -0.118 4.118 16 C -0.036 4.036 17 N -0.193 5.193 18 C -0.050 4.050 19 C -0.122 4.122 20 Cl -0.026 7.026 21 C -0.099 4.099 22 H 0.078 0.922 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.041 0.959 26 H 0.042 0.958 27 H 0.073 0.927 28 H 0.159 0.841 29 H 0.050 0.950 30 H 0.123 0.877 31 H 0.201 0.799 32 H 0.203 0.797 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.370 0.253 14.948 17.134 hybrid contribution 2.104 0.615 -1.650 2.744 sum -6.267 0.868 13.298 14.726 Atomic orbital electron populations 1.21753 0.93314 1.02038 1.01687 1.21375 0.95703 0.94871 0.89231 0.95496 1.19736 0.94047 0.96657 0.94830 1.21360 0.92165 1.33968 1.08584 0.94638 1.25920 0.95453 0.96884 1.00665 1.70060 1.08461 1.46967 1.33444 0.85721 0.79362 0.78649 0.79264 1.19359 1.21523 1.17153 1.60763 1.33930 1.32118 1.04354 1.20889 1.01648 0.92571 0.87484 1.20899 0.92848 1.00017 0.97999 1.23102 1.01573 0.90465 0.88442 1.67917 1.16007 1.16729 1.18637 1.23123 0.87136 0.95857 0.98893 1.22125 0.87205 1.03979 0.98857 1.98381 1.13429 1.97144 1.93598 1.21653 0.96569 0.96458 0.95173 0.92221 0.92566 0.91521 0.95924 0.95834 0.92705 0.84071 0.95000 0.87682 0.79911 0.79718 0.84535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 9.41 71.98 0.68 -2.98 16 2 C 0.10 3.53 2.59 44.91 0.12 3.65 16 3 H 0.03 1.02 7.80 -2.38 -0.02 1.00 16 4 C -0.02 -0.67 3.64 29.85 0.11 -0.56 16 5 C -0.52 -28.56 8.67 25.60 0.22 -28.34 16 6 H 0.04 2.12 7.73 -2.91 -0.02 2.09 16 7 C 0.01 0.45 5.47 84.65 0.46 0.91 16 8 N -0.95 -58.29 13.96 21.45 0.30 -57.99 16 9 Si 0.95 43.71 27.47 68.60 1.88 45.60 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 13 N -0.68 -23.36 6.30 -495.56 -3.12 -26.48 16 14 C 0.10 2.83 5.64 85.56 0.48 3.31 16 15 C -0.12 -3.02 5.41 -19.78 -0.11 -3.12 16 16 C 0.12 2.90 10.86 84.69 0.92 3.82 16 17 N -0.48 -12.13 10.36 -195.74 -2.03 -14.15 16 18 C 0.11 2.48 10.99 84.70 0.93 3.41 16 19 C -0.09 -2.32 6.34 22.42 0.14 -2.18 16 20 Cl -0.05 -1.28 28.99 -2.72 -0.08 -1.35 16 21 C -0.07 -1.96 9.67 22.49 0.22 -1.74 16 22 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.07 1.55 7.45 -2.38 -0.02 1.53 16 25 H 0.02 1.02 7.20 -2.39 -0.02 1.01 16 26 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 27 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 28 H 0.34 13.91 7.20 -89.69 -0.65 13.27 16 29 H 0.03 0.93 8.01 -2.39 -0.02 0.91 16 30 H 0.11 2.34 7.39 -2.39 -0.02 2.32 16 31 H 0.18 3.49 8.06 -2.91 -0.02 3.46 16 32 H 0.19 3.20 8.06 -2.91 -0.02 3.17 16 33 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -62.36 295.64 1.54 -60.82 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.41 Total: 17.39 kcal Atomic # 6 Polarization: -28.00 SS G_CDS: 4.17 Total: -23.82 kcal Atomic # 7 Polarization: -93.78 SS G_CDS: -4.85 Total: -98.63 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.88 Total: 45.60 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.08 Total: -1.35 kcal Total: -62.36 1.54 -60.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703024279.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.549 kcal (2) G-P(sol) polarization free energy of solvation -62.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds