Wall clock time and date at job start Mon Mar 30 2020 06:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08989 * 109.47643 * 2 1 4 4 C 1.50706 * 109.46940 * 120.00081 * 2 1 3 5 5 H 1.08001 * 119.99967 * 119.99770 * 4 2 1 6 6 C 1.37874 * 119.99787 * 299.99821 * 4 2 1 7 7 N 1.31513 * 120.00261 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99731 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47450 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47133 * 119.99973 * 8 6 4 11 11 H 1.48503 * 109.47424 * 239.99765 * 8 6 4 12 12 N 1.46496 * 109.47027 * 239.99495 * 2 1 3 13 13 C 1.46500 * 120.00509 * 295.27745 * 12 2 1 14 14 C 1.39712 * 120.00041 * 115.27427 * 12 2 1 15 15 C 1.39312 * 120.49751 * 185.45997 * 14 12 2 16 16 C 1.38493 * 118.35969 * 179.71654 * 15 14 12 17 17 C 1.38279 * 119.24030 * 0.57254 * 16 15 14 18 18 C 1.50699 * 119.53782 * 179.70355 * 17 16 15 19 19 Cl 1.80295 * 109.46955 * 89.97965 * 18 17 16 20 20 N 1.31852 * 120.92555 * 359.68539 * 17 16 15 21 21 C 1.31814 * 121.80623 * 0.02562 * 20 17 16 22 22 H 1.09001 * 109.47137 * 59.99866 * 1 2 3 23 23 H 1.09001 * 109.47359 * 300.00361 * 1 2 3 24 24 H 1.09002 * 109.47611 * 179.97438 * 1 2 3 25 25 H 0.96993 * 120.00137 * 179.97438 * 7 6 4 26 26 H 1.08996 * 109.47249 * 89.99833 * 13 12 2 27 27 H 1.09002 * 109.47088 * 209.99835 * 13 12 2 28 28 H 1.08999 * 109.46959 * 329.99519 * 13 12 2 29 29 H 1.07995 * 120.81868 * 359.97438 * 15 14 12 30 30 H 1.07995 * 120.38407 * 180.30177 * 16 15 14 31 31 H 1.08999 * 109.47345 * 209.97985 * 18 17 16 32 32 H 1.09006 * 109.46666 * 329.98353 * 18 17 16 33 33 H 1.08000 * 119.67720 * 180.02562 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3212 -1.1204 4.0079 9 1 3.1463 -2.2871 3.6039 10 1 3.1465 -0.1875 4.8165 11 1 1.1659 -1.5867 4.8161 12 7 2.0183 -0.6907 -1.1961 13 6 1.7517 -2.1198 -1.3769 14 6 2.7382 0.0135 -2.1645 15 6 3.1095 -0.6034 -3.3571 16 6 3.8172 0.1379 -4.2886 17 6 4.1399 1.4516 -4.0022 18 6 4.9156 2.2623 -5.0083 19 17 3.7681 3.0979 -6.1199 20 7 3.7783 2.0050 -2.8614 21 6 3.0992 1.3375 -1.9499 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 0.7089 1.1614 3.4843 26 1 0.8095 -2.2492 -1.9094 27 1 2.5598 -2.5700 -1.9536 28 1 1.6877 -2.6036 -0.4023 29 1 2.8484 -1.6330 -3.5521 30 1 4.1173 -0.3063 -5.2261 31 1 5.5219 3.0036 -4.4877 32 1 5.5640 1.6022 -5.5845 33 1 2.8203 1.8250 -1.0275 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703450577.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:02 Heat of formation + Delta-G solvation = 27.837598 kcal Electronic energy + Delta-G solvation = -16452.329270 eV Core-core repulsion = 13731.820498 eV Total energy + Delta-G solvation = -2720.508773 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.86353 -36.87096 -35.70422 -33.35681 -31.81034 -31.24173 -29.19726 -27.47377 -25.36643 -24.58156 -23.13794 -21.32691 -19.79872 -17.10118 -16.54388 -15.88820 -15.37286 -14.71679 -14.59765 -13.95782 -13.75208 -13.63599 -13.20318 -12.73920 -12.54857 -12.48025 -12.11269 -11.69441 -11.37986 -11.07826 -10.97810 -10.70644 -10.48563 -10.30942 -10.27225 -10.18951 -9.79408 -9.29106 -8.98901 -8.90215 -8.56780 -6.66487 -6.19506 -4.30730 1.54549 1.78405 2.69817 3.17872 3.26845 3.29264 3.86879 4.28694 4.39387 4.62983 4.90837 5.09194 5.22803 5.36247 5.42729 5.64821 5.70994 5.82423 6.01266 6.08002 6.31423 6.46720 6.56850 6.60947 6.77769 6.89567 7.01131 7.25818 7.53609 7.70675 7.90946 8.12184 8.29626 8.55678 8.74714 9.36948 10.83077 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.035313 B = 0.004862 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.722007 B = 5757.961175 C = 5948.617763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.262 3.738 3 H 0.054 0.946 4 C -0.530 4.530 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.283 1.283 12 N -0.592 5.592 13 C 0.094 3.906 14 C 0.201 3.799 15 C -0.186 4.186 16 C -0.096 4.096 17 C 0.003 3.997 18 C 0.042 3.958 19 Cl -0.191 7.191 20 N -0.427 5.427 21 C 0.027 3.973 22 H 0.012 0.988 23 H 0.094 0.906 24 H 0.030 0.970 25 H 0.265 0.735 26 H 0.039 0.961 27 H 0.051 0.949 28 H 0.081 0.919 29 H 0.128 0.872 30 H 0.124 0.876 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.555 -2.025 -11.436 12.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.161 3.839 3 H 0.071 0.929 4 C -0.569 4.569 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.209 1.209 12 N -0.295 5.295 13 C -0.050 4.050 14 C 0.088 3.912 15 C -0.217 4.217 16 C -0.117 4.117 17 C -0.136 4.136 18 C -0.022 4.022 19 Cl -0.165 7.165 20 N -0.136 5.136 21 C -0.140 4.140 22 H 0.031 0.969 23 H 0.113 0.887 24 H 0.050 0.950 25 H 0.075 0.925 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.100 0.900 29 H 0.146 0.854 30 H 0.142 0.858 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 4.483 -1.111 -11.041 11.968 hybrid contribution -0.074 -1.418 0.712 1.588 sum 4.409 -2.529 -10.329 11.511 Atomic orbital electron populations 1.22125 0.98058 0.99714 1.00872 1.19038 0.91125 0.93420 0.80280 0.92893 1.21353 1.32055 1.13399 0.90088 0.91966 1.24892 0.94732 0.94939 0.99059 1.69865 1.36060 1.22510 1.23985 0.86422 0.78657 0.79644 0.82604 1.19790 1.20789 1.20855 1.47382 1.53773 1.08064 1.20234 1.21539 0.98866 0.82103 1.02466 1.19130 0.90084 0.92927 0.89048 1.20974 1.05796 1.00854 0.94053 1.21486 0.97106 0.94322 0.98822 1.20296 1.06101 0.92552 0.94609 1.22807 0.90951 0.97417 0.90988 1.98715 1.67936 1.81958 1.67916 1.67172 1.08090 1.37443 1.00877 1.22550 1.00705 0.91205 0.99491 0.96858 0.88731 0.95037 0.92520 0.94301 0.93014 0.90045 0.85382 0.85829 0.88024 0.88316 0.81951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.04 37.16 0.34 -3.04 16 2 C 0.26 6.07 2.59 -69.08 -0.18 5.89 16 3 H 0.05 1.32 5.34 -51.94 -0.28 1.05 16 4 C -0.53 -13.38 7.96 -34.44 -0.27 -13.65 16 5 H 0.06 1.57 7.00 -52.49 -0.37 1.21 16 6 C 0.07 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -23.57 11.32 55.43 0.63 -22.94 16 8 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 9 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 N -0.59 -11.84 2.89 -173.19 -0.50 -12.34 16 13 C 0.09 1.59 9.26 59.85 0.55 2.14 16 14 C 0.20 3.81 6.55 -83.62 -0.55 3.26 16 15 C -0.19 -2.99 9.26 -39.09 -0.36 -3.35 16 16 C -0.10 -1.40 9.73 -39.47 -0.38 -1.79 16 17 C 0.00 0.04 6.16 -82.57 -0.51 -0.47 16 18 C 0.04 0.51 6.94 36.01 0.25 0.76 16 19 Cl -0.19 -2.59 29.13 -51.86 -1.51 -4.10 16 20 N -0.43 -7.94 10.26 -9.30 -0.10 -8.04 16 21 C 0.03 0.53 10.49 -17.31 -0.18 0.34 16 22 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 23 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 24 H 0.03 0.68 7.79 -51.93 -0.40 0.27 16 25 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.75 6.49 -51.93 -0.34 0.41 16 28 H 0.08 1.46 6.67 -51.93 -0.35 1.11 16 29 H 0.13 1.78 6.43 -52.49 -0.34 1.44 16 30 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.10 0.92 8.08 -51.93 -0.42 0.50 16 33 H 0.16 3.39 5.76 -52.49 -0.30 3.09 16 LS Contribution 288.15 15.07 4.34 4.34 Total: -1.00 -27.00 288.15 -7.48 -34.48 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -3.93 Total: 1.78 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -1.39 Total: -8.28 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 0.03 Total: -43.32 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 17 Polarization: -2.59 SS G_CDS: -1.51 Total: -4.10 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.00 -7.48 -34.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703450577.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.322 kcal (2) G-P(sol) polarization free energy of solvation -27.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds