Wall clock time and date at job start Mon Mar 30 2020 06:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08989 * 109.47643 * 2 1 4 4 C 1.50706 * 109.46940 * 120.00081 * 2 1 3 5 5 H 1.08001 * 119.99967 * 119.99770 * 4 2 1 6 6 C 1.37874 * 119.99787 * 299.99821 * 4 2 1 7 7 N 1.31513 * 120.00261 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99731 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47450 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47133 * 119.99973 * 8 6 4 11 11 H 1.48503 * 109.47424 * 239.99765 * 8 6 4 12 12 N 1.46496 * 109.47027 * 239.99495 * 2 1 3 13 13 C 1.46500 * 120.00509 * 295.27745 * 12 2 1 14 14 C 1.39712 * 120.00041 * 115.27427 * 12 2 1 15 15 C 1.39312 * 120.49751 * 185.45997 * 14 12 2 16 16 C 1.38493 * 118.35969 * 179.71654 * 15 14 12 17 17 C 1.38279 * 119.24030 * 0.57254 * 16 15 14 18 18 C 1.50699 * 119.53782 * 179.70355 * 17 16 15 19 19 Cl 1.80295 * 109.46955 * 89.97965 * 18 17 16 20 20 N 1.31852 * 120.92555 * 359.68539 * 17 16 15 21 21 C 1.31814 * 121.80623 * 0.02562 * 20 17 16 22 22 H 1.09001 * 109.47137 * 59.99866 * 1 2 3 23 23 H 1.09001 * 109.47359 * 300.00361 * 1 2 3 24 24 H 1.09002 * 109.47611 * 179.97438 * 1 2 3 25 25 H 0.96993 * 120.00137 * 179.97438 * 7 6 4 26 26 H 1.08996 * 109.47249 * 89.99833 * 13 12 2 27 27 H 1.09002 * 109.47088 * 209.99835 * 13 12 2 28 28 H 1.08999 * 109.46959 * 329.99519 * 13 12 2 29 29 H 1.07995 * 120.81868 * 359.97438 * 15 14 12 30 30 H 1.07995 * 120.38407 * 180.30177 * 16 15 14 31 31 H 1.08999 * 109.47345 * 209.97985 * 18 17 16 32 32 H 1.09006 * 109.46666 * 329.98353 * 18 17 16 33 33 H 1.08000 * 119.67720 * 180.02562 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3212 -1.1204 4.0079 9 1 3.1463 -2.2871 3.6039 10 1 3.1465 -0.1875 4.8165 11 1 1.1659 -1.5867 4.8161 12 7 2.0183 -0.6907 -1.1961 13 6 1.7517 -2.1198 -1.3769 14 6 2.7382 0.0135 -2.1645 15 6 3.1095 -0.6034 -3.3571 16 6 3.8172 0.1379 -4.2886 17 6 4.1399 1.4516 -4.0022 18 6 4.9156 2.2623 -5.0083 19 17 3.7681 3.0979 -6.1199 20 7 3.7783 2.0050 -2.8614 21 6 3.0992 1.3375 -1.9499 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 0.7089 1.1614 3.4843 26 1 0.8095 -2.2492 -1.9094 27 1 2.5598 -2.5700 -1.9536 28 1 1.6877 -2.6036 -0.4023 29 1 2.8484 -1.6330 -3.5521 30 1 4.1173 -0.3063 -5.2261 31 1 5.5219 3.0036 -4.4877 32 1 5.5640 1.6022 -5.5845 33 1 2.8203 1.8250 -1.0275 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703450577.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:02 Heat of formation + Delta-G solvation = 13.214753 kcal Electronic energy + Delta-G solvation = -16452.963364 eV Core-core repulsion = 13731.820498 eV Total energy + Delta-G solvation = -2721.142867 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.21010 -38.36688 -36.78229 -35.12659 -33.15162 -32.67766 -30.81989 -28.72288 -27.30940 -25.94670 -24.52884 -22.76364 -21.35180 -18.70010 -18.16195 -17.43728 -16.73784 -16.37201 -15.82145 -15.33490 -15.16855 -15.00766 -14.40105 -14.18785 -13.99568 -13.78321 -13.55715 -13.34369 -13.03034 -12.76476 -12.72657 -12.40889 -12.17587 -11.98165 -11.48541 -11.35168 -11.27926 -10.90519 -10.56434 -10.32659 -10.27313 -8.28489 -7.99378 -6.31785 0.29544 0.47198 1.39691 1.42914 1.52530 1.61819 2.31892 2.51754 3.07277 3.12406 3.42755 3.80464 4.02994 4.13068 4.37416 4.42851 4.48393 4.65892 4.68663 4.73618 4.83106 4.95305 5.02785 5.07725 5.19037 5.27798 5.40744 5.59723 5.76582 5.84734 6.12322 6.39456 6.76214 6.83268 7.21048 7.39376 8.87240 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.035313 B = 0.004862 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.722007 B = 5757.961175 C = 5948.617763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.267 3.733 3 H 0.026 0.974 4 C -0.537 4.537 5 H 0.058 0.942 6 C 0.021 3.979 7 N -0.914 5.914 8 Si 0.959 3.041 9 H -0.268 1.268 10 H -0.284 1.284 11 H -0.278 1.278 12 N -0.606 5.606 13 C 0.095 3.905 14 C 0.179 3.821 15 C -0.174 4.174 16 C -0.088 4.088 17 C 0.004 3.996 18 C 0.043 3.957 19 Cl -0.199 7.199 20 N -0.450 5.450 21 C -0.004 4.004 22 H 0.019 0.981 23 H 0.069 0.931 24 H 0.036 0.964 25 H 0.265 0.735 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.156 0.844 30 H 0.169 0.831 31 H 0.105 0.895 32 H 0.140 0.860 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.778 -3.615 -13.551 15.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.165 3.835 3 H 0.044 0.956 4 C -0.576 4.576 5 H 0.077 0.923 6 C -0.179 4.179 7 N -0.553 5.553 8 Si 0.784 3.216 9 H -0.192 1.192 10 H -0.210 1.210 11 H -0.204 1.204 12 N -0.311 5.311 13 C -0.048 4.048 14 C 0.069 3.931 15 C -0.204 4.204 16 C -0.108 4.108 17 C -0.136 4.136 18 C -0.019 4.019 19 Cl -0.173 7.173 20 N -0.159 5.159 21 C -0.168 4.168 22 H 0.038 0.962 23 H 0.087 0.913 24 H 0.056 0.944 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.174 0.826 30 H 0.187 0.813 31 H 0.123 0.877 32 H 0.158 0.842 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.709 -2.707 -13.166 14.604 hybrid contribution -0.367 -0.868 1.203 1.528 sum 5.343 -3.575 -11.963 13.581 Atomic orbital electron populations 1.21930 0.97962 0.99658 0.99876 1.18670 0.91123 0.92317 0.81399 0.95650 1.21610 1.31674 1.13166 0.91146 0.92341 1.25620 0.95024 0.95593 1.01700 1.69988 1.37164 1.23735 1.24425 0.85497 0.78131 0.78584 0.79350 1.19244 1.20990 1.20399 1.47159 1.55049 1.09110 1.19785 1.21638 1.00623 0.80323 1.02209 1.19270 0.90925 0.92752 0.90168 1.21349 1.04410 1.02056 0.92606 1.21972 0.95389 0.93548 0.99931 1.20993 1.04915 0.93725 0.93976 1.23034 0.90390 0.97890 0.90623 1.98720 1.68490 1.82210 1.67914 1.67141 1.08598 1.38209 1.01961 1.22207 1.02939 0.92212 0.99467 0.96175 0.91267 0.94439 0.92591 0.92972 0.90261 0.91672 0.82609 0.81321 0.87670 0.84223 0.84947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.32 9.04 71.98 0.65 -5.67 16 2 C 0.27 12.83 2.59 44.25 0.11 12.94 16 3 H 0.03 1.37 5.34 -2.39 -0.01 1.36 16 4 C -0.54 -27.73 7.96 25.60 0.20 -27.52 16 5 H 0.06 2.99 7.00 -2.91 -0.02 2.97 16 6 C 0.02 1.08 5.30 84.65 0.45 1.53 16 7 N -0.91 -50.24 11.32 21.45 0.24 -49.99 16 8 Si 0.96 41.76 29.54 68.60 2.03 43.78 16 9 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 12 N -0.61 -24.28 2.89 -701.86 -2.03 -26.30 16 13 C 0.09 3.06 9.26 127.77 1.18 4.24 16 14 C 0.18 6.71 6.55 38.30 0.25 6.96 16 15 C -0.17 -5.03 9.26 22.59 0.21 -4.82 16 16 C -0.09 -2.20 9.73 22.34 0.22 -1.98 16 17 C 0.00 0.11 6.16 42.57 0.26 0.38 16 18 C 0.04 0.92 6.94 71.24 0.49 1.41 16 19 Cl -0.20 -4.88 29.13 -2.72 -0.08 -4.96 16 20 N -0.45 -16.68 10.26 -183.33 -1.88 -18.56 16 21 C 0.00 -0.18 10.49 84.85 0.89 0.71 16 22 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 23 H 0.07 3.58 6.07 -2.39 -0.01 3.56 16 24 H 0.04 1.64 7.79 -2.39 -0.02 1.62 16 25 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 26 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.08 2.07 6.49 -2.39 -0.02 2.05 16 28 H 0.06 2.29 6.67 -2.39 -0.02 2.28 16 29 H 0.16 3.60 6.43 -2.91 -0.02 3.58 16 30 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 31 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.14 1.86 8.08 -2.38 -0.02 1.84 16 33 H 0.13 6.07 5.76 -2.91 -0.02 6.05 16 Total: -1.00 -59.99 288.15 4.32 -55.67 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 1.12 Total: 12.18 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: 4.92 Total: -11.81 kcal Atomic # 7 Polarization: -91.19 SS G_CDS: -3.67 Total: -94.86 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.78 kcal Atomic # 17 Polarization: -4.88 SS G_CDS: -0.08 Total: -4.96 kcal Total: -59.99 4.32 -55.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703450577.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.889 kcal (2) G-P(sol) polarization free energy of solvation -59.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds