Wall clock time and date at job start Mon Mar 30 2020 06:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47553 * 2 1 4 4 N 1.46500 * 109.47379 * 179.97438 * 3 2 1 5 5 C 1.36932 * 120.00408 * 276.14242 * 4 3 2 6 6 H 1.08001 * 120.00125 * 33.76339 * 5 4 3 7 7 C 1.38816 * 120.00148 * 213.76972 * 5 4 3 8 8 N 1.31622 * 119.99645 * 23.26586 * 7 5 4 9 9 Si 1.86794 * 120.00057 * 203.27327 * 7 5 4 10 10 H 1.48505 * 109.47345 * 59.99753 * 9 7 5 11 11 H 1.48500 * 109.47102 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47091 * 299.99485 * 9 7 5 13 13 C 1.46508 * 119.99737 * 96.13649 * 4 3 2 14 14 C 1.50697 * 109.47065 * 270.00466 * 13 4 3 15 15 N 1.31881 * 119.62426 * 269.97686 * 14 13 4 16 16 C 1.31849 * 121.73469 * 179.73049 * 15 14 13 17 17 C 1.38228 * 120.79628 * 0.58211 * 16 15 14 18 18 C 1.38608 * 119.17388 * 359.43346 * 17 16 15 19 19 C 1.38305 * 119.63087 * 90.00257 * 14 13 4 20 20 Cl 1.73600 * 120.42842 * 359.95156 * 19 14 13 21 21 H 1.09002 * 109.47086 * 59.99660 * 1 2 3 22 22 H 1.08996 * 109.47368 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47160 * 299.99815 * 1 2 3 24 24 H 1.08998 * 109.47055 * 239.99784 * 2 1 3 25 25 H 1.09002 * 109.47086 * 120.00340 * 2 1 3 26 26 H 1.09005 * 109.46736 * 59.99926 * 3 2 1 27 27 H 1.09002 * 109.47202 * 300.00269 * 3 2 1 28 28 H 0.96998 * 119.99524 * 179.97438 * 8 7 5 29 29 H 1.08991 * 109.47017 * 150.00070 * 13 4 3 30 30 H 1.08997 * 109.46715 * 30.00361 * 13 4 3 31 31 H 1.08001 * 119.60276 * 180.31447 * 16 15 14 32 32 H 1.08003 * 120.41550 * 179.70786 * 17 16 15 33 33 H 1.08000 * 120.79492 * 180.29949 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1893 1.3156 1.1799 6 1 3.7856 0.7073 1.9758 7 6 5.4017 1.9692 1.3526 8 7 5.6835 3.0344 0.6326 9 14 6.6333 1.3368 2.6067 10 1 7.0216 -0.0543 2.2612 11 1 7.8390 2.2037 2.5970 12 1 6.0187 1.3581 3.9583 13 6 4.2380 1.5778 -1.2606 14 6 4.4893 0.2116 -1.8448 15 7 5.5908 -0.4406 -1.5276 16 6 5.8500 -1.6399 -2.0101 17 6 4.9732 -2.2563 -2.8830 18 6 3.8044 -1.6026 -3.2404 19 6 3.5624 -0.3441 -2.7080 20 17 2.1149 0.5214 -3.1195 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.6767 1.9562 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 6.5306 3.4912 0.7536 29 1 5.1903 2.0747 -1.0758 30 1 3.6492 2.1698 -1.9612 31 1 6.7605 -2.1450 -1.7232 32 1 5.1940 -3.2369 -3.2782 33 1 3.0986 -2.0619 -3.9166 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703847589.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:29 Heat of formation + Delta-G solvation = 27.218986 kcal Electronic energy + Delta-G solvation = -17240.969866 eV Core-core repulsion = 14520.434269 eV Total energy + Delta-G solvation = -2720.535598 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.08437 -37.94751 -37.40819 -34.68085 -33.51576 -32.85930 -31.68328 -27.90543 -27.31618 -24.45284 -24.17300 -22.58374 -21.79719 -18.81731 -17.74692 -17.56936 -16.82051 -16.43712 -16.20732 -15.59774 -15.08550 -14.76989 -14.62797 -14.17751 -13.82161 -13.30863 -13.19321 -13.03068 -12.88967 -12.78891 -12.49393 -12.21656 -12.15224 -12.11644 -11.83731 -11.56473 -11.26909 -10.62539 -10.46711 -10.24187 -9.65343 -8.60471 -7.81713 -5.38586 0.11612 0.36580 1.18756 1.43869 1.49421 1.54826 2.52315 2.83804 3.28762 3.63588 3.81704 3.90130 3.96912 4.17702 4.26939 4.42917 4.52811 4.66434 4.76951 4.83086 4.88732 4.97764 5.08834 5.15768 5.21826 5.24254 5.43815 5.63096 5.65469 5.71780 5.76701 6.45632 7.16023 7.24677 7.86636 8.36641 9.14957 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.018476 B = 0.010286 C = 0.007911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.088050 B = 2721.419954 C = 3538.556790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.135 4.135 3 C 0.148 3.852 4 N -0.582 5.582 5 C -0.261 4.261 6 H 0.048 0.952 7 C -0.020 4.020 8 N -0.909 5.909 9 Si 0.949 3.051 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.277 1.277 13 C 0.180 3.820 14 C 0.128 3.872 15 N -0.497 5.497 16 C 0.082 3.918 17 C -0.165 4.165 18 C -0.070 4.070 19 C -0.099 4.099 20 Cl -0.054 7.054 21 H 0.057 0.943 22 H 0.060 0.940 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.029 0.971 26 H 0.030 0.970 27 H 0.050 0.950 28 H 0.252 0.748 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.175 0.825 32 H 0.181 0.819 33 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.698 -10.166 -9.131 14.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.175 4.175 3 C 0.023 3.977 4 N -0.301 5.301 5 C -0.391 4.391 6 H 0.065 0.935 7 C -0.218 4.218 8 N -0.553 5.553 9 Si 0.778 3.222 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.202 1.202 13 C 0.053 3.947 14 C -0.012 4.012 15 N -0.207 5.207 16 C -0.075 4.075 17 C -0.185 4.185 18 C -0.097 4.097 19 C -0.129 4.129 20 Cl -0.026 7.026 21 H 0.076 0.924 22 H 0.079 0.921 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.192 0.808 32 H 0.198 0.802 33 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -5.122 -9.517 -8.556 13.785 hybrid contribution 0.217 -0.397 0.250 0.517 sum -4.905 -9.914 -8.306 13.832 Atomic orbital electron populations 1.21612 0.94295 1.01721 1.01693 1.22025 0.96385 0.98743 1.00298 1.21043 0.83075 0.94793 0.98772 1.43803 1.00646 1.84176 1.01489 1.18978 1.03757 1.22717 0.93645 0.93471 1.25526 1.01438 0.94858 0.99944 1.70051 1.23584 1.17486 1.44133 0.85638 0.79210 0.77888 0.79474 1.21181 1.21658 1.20249 1.19872 0.99849 0.88831 0.86172 1.22559 0.88378 0.99568 0.90731 1.67747 1.19997 1.10022 1.22976 1.23445 1.00275 0.90546 0.93270 1.22423 0.93900 1.02715 0.99454 1.21848 0.98187 0.91491 0.98129 1.22000 0.91418 0.96474 1.02988 1.98320 1.35333 1.76728 1.92193 0.92386 0.92109 0.92854 0.92616 0.95240 0.95112 0.93167 0.93879 0.90082 0.93024 0.80812 0.80194 0.81231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.87 9.91 71.98 0.71 -3.15 16 2 C -0.13 -5.02 5.87 30.59 0.18 -4.84 16 3 C 0.15 6.40 5.12 86.38 0.44 6.84 16 4 N -0.58 -29.70 2.45 -706.34 -1.73 -31.42 16 5 C -0.26 -14.76 9.47 84.04 0.80 -13.96 16 6 H 0.05 2.72 7.93 -2.91 -0.02 2.70 16 7 C -0.02 -1.12 4.95 84.86 0.42 -0.70 16 8 N -0.91 -54.05 11.32 21.65 0.25 -53.81 16 9 Si 0.95 46.73 29.61 68.60 2.03 48.76 16 10 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 11 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 13 C 0.18 8.86 5.23 85.63 0.45 9.31 16 14 C 0.13 5.50 6.35 42.57 0.27 5.77 16 15 N -0.50 -21.54 10.27 -183.80 -1.89 -23.43 16 16 C 0.08 2.62 11.18 84.69 0.95 3.57 16 17 C -0.16 -4.00 10.11 22.36 0.23 -3.78 16 18 C -0.07 -1.85 9.98 22.49 0.22 -1.63 16 19 C -0.10 -3.41 5.04 22.42 0.11 -3.30 16 20 Cl -0.05 -1.69 23.90 -2.72 -0.07 -1.76 16 21 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 22 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 24 H 0.06 2.08 5.01 -2.39 -0.01 2.06 16 25 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.03 1.38 8.09 -2.38 -0.02 1.36 16 27 H 0.05 2.03 6.85 -2.39 -0.02 2.01 16 28 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 29 H 0.08 4.66 5.31 -2.39 -0.01 4.65 16 30 H 0.05 2.41 6.61 -2.39 -0.02 2.39 16 31 H 0.17 4.44 8.06 -2.91 -0.02 4.42 16 32 H 0.18 2.62 8.06 -2.91 -0.02 2.60 16 33 H 0.17 3.19 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -66.50 286.94 4.48 -62.03 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: 1.10 Total: 5.50 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: 4.78 Total: -5.87 kcal Atomic # 7 Polarization: -105.29 SS G_CDS: -3.37 Total: -108.66 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Atomic # 17 Polarization: -1.69 SS G_CDS: -0.07 Total: -1.76 kcal Total: -66.50 4.48 -62.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703847589.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.246 kcal (2) G-P(sol) polarization free energy of solvation -66.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds