Wall clock time and date at job start Mon Mar 30 2020 06:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47398 * 2 1 4 4 N 1.46507 * 109.46745 * 119.99748 * 2 1 3 5 5 C 1.36935 * 119.99921 * 295.02015 * 4 2 1 6 6 H 1.07995 * 119.99883 * 37.44397 * 5 4 2 7 7 C 1.38815 * 119.99897 * 217.43989 * 5 4 2 8 8 N 1.31622 * 119.99822 * 21.56473 * 7 5 4 9 9 Si 1.86799 * 119.99876 * 201.55517 * 7 5 4 10 10 H 1.48499 * 109.47114 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46777 * 120.00484 * 9 7 5 12 12 H 1.48504 * 109.47464 * 240.00530 * 9 7 5 13 13 C 1.46504 * 120.00005 * 115.02555 * 4 2 1 14 14 C 1.50694 * 109.47048 * 269.99941 * 13 4 2 15 15 N 1.31875 * 119.62630 * 269.97681 * 14 13 4 16 16 C 1.31855 * 121.74061 * 179.72274 * 15 14 13 17 17 C 1.38237 * 120.79119 * 0.59268 * 16 15 14 18 18 C 1.38610 * 119.17337 * 359.42257 * 17 16 15 19 19 C 1.38311 * 119.62967 * 89.99849 * 14 13 4 20 20 Cl 1.73599 * 120.42864 * 359.95811 * 19 14 13 21 21 H 1.08996 * 109.47431 * 298.39832 * 1 2 3 22 22 H 1.09003 * 109.47209 * 58.39422 * 1 2 3 23 23 H 1.08996 * 109.47636 * 178.39149 * 1 2 3 24 24 H 1.09003 * 109.47441 * 239.99511 * 2 1 3 25 25 H 1.08998 * 109.46919 * 183.31655 * 3 2 1 26 26 H 1.09000 * 109.46951 * 303.30837 * 3 2 1 27 27 H 1.09002 * 109.47487 * 63.31347 * 3 2 1 28 28 H 0.96996 * 119.99716 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.46990 * 149.99816 * 13 4 2 30 30 H 1.08999 * 109.47206 * 29.99624 * 13 4 2 31 31 H 1.07994 * 119.60957 * 180.31483 * 16 15 14 32 32 H 1.07996 * 120.41335 * 179.70417 * 17 16 15 33 33 H 1.08004 * 120.79594 * 180.30050 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 1.7735 -0.1662 2.4374 6 1 0.8288 0.3147 2.6436 7 6 2.7397 -0.2530 3.4303 8 7 4.0023 -0.4341 3.1058 9 14 2.2478 -0.1125 5.2269 10 1 0.7793 0.0860 5.3240 11 1 2.6271 -1.3570 5.9427 12 1 2.9458 1.0449 5.8422 13 6 2.7683 -1.9421 1.0647 14 6 1.8118 -3.1062 1.0907 15 7 1.5006 -3.6687 2.2422 16 6 0.6643 -4.6856 2.3139 17 6 0.0886 -5.2102 1.1718 18 6 0.3909 -4.6460 -0.0576 19 6 1.2704 -3.5730 -0.0934 20 17 1.6854 -2.8261 -1.6045 21 1 -0.3634 0.4887 0.9039 22 1 -0.3634 0.5386 -0.8752 23 1 -0.3634 -1.0272 -0.0288 24 1 1.8933 -0.5139 -0.8899 25 1 3.1283 1.4430 -0.0595 26 1 1.6291 1.9731 -0.8589 27 1 1.7260 1.9390 0.9182 28 1 4.6775 -0.4943 3.7997 29 1 3.4728 -2.0321 1.8916 30 1 3.3139 -1.9412 0.1211 31 1 0.4298 -5.1168 3.2758 32 1 -0.5919 -6.0463 1.2372 33 1 -0.0477 -5.0318 -0.9660 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703853601.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:32 Heat of formation + Delta-G solvation = 29.689884 kcal Electronic energy + Delta-G solvation = -17316.374458 eV Core-core repulsion = 14595.946006 eV Total energy + Delta-G solvation = -2720.428452 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.06101 -38.18941 -37.45172 -34.32984 -33.52316 -32.78301 -30.78858 -27.78468 -27.75078 -25.28427 -24.33005 -22.76425 -21.31545 -18.43590 -17.71035 -17.46632 -16.81154 -16.44221 -16.17699 -15.48561 -15.03764 -14.53547 -14.38951 -14.13327 -13.68686 -13.21456 -13.16101 -13.06055 -12.93866 -12.85240 -12.63521 -12.37564 -12.11326 -12.07774 -11.79078 -11.64810 -11.09065 -10.62305 -10.45698 -10.23601 -9.63657 -8.51203 -7.77653 -5.36082 0.12450 0.37275 1.18623 1.43865 1.48787 1.55592 2.53800 2.84599 3.33473 3.64092 3.78123 3.91304 3.97980 4.18396 4.35743 4.53362 4.59652 4.74576 4.79825 4.91133 4.96085 5.10336 5.11552 5.16895 5.17484 5.20054 5.59749 5.64484 5.70244 5.75559 5.82419 6.53234 7.21720 7.25453 7.91557 8.43949 9.19847 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.019013 B = 0.010603 C = 0.007890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.320427 B = 2640.014517 C = 3547.921985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.152 3.848 3 C -0.138 4.138 4 N -0.574 5.574 5 C -0.242 4.242 6 H 0.046 0.954 7 C -0.020 4.020 8 N -0.910 5.910 9 Si 0.944 3.056 10 H -0.275 1.275 11 H -0.293 1.293 12 H -0.292 1.292 13 C 0.185 3.815 14 C 0.128 3.872 15 N -0.497 5.497 16 C 0.083 3.917 17 C -0.165 4.165 18 C -0.070 4.070 19 C -0.100 4.100 20 Cl -0.057 7.057 21 H 0.033 0.967 22 H 0.067 0.933 23 H 0.034 0.966 24 H 0.067 0.933 25 H 0.030 0.970 26 H 0.066 0.934 27 H 0.037 0.963 28 H 0.249 0.751 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.176 0.824 32 H 0.180 0.820 33 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.799 -8.488 -8.260 14.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.046 3.954 3 C -0.197 4.197 4 N -0.293 5.293 5 C -0.372 4.372 6 H 0.064 0.936 7 C -0.218 4.218 8 N -0.554 5.554 9 Si 0.773 3.227 10 H -0.200 1.200 11 H -0.220 1.220 12 H -0.219 1.219 13 C 0.058 3.942 14 C -0.013 4.013 15 N -0.207 5.207 16 C -0.074 4.074 17 C -0.185 4.185 18 C -0.096 4.096 19 C -0.130 4.130 20 Cl -0.028 7.028 21 H 0.052 0.948 22 H 0.086 0.914 23 H 0.053 0.947 24 H 0.085 0.915 25 H 0.049 0.951 26 H 0.085 0.915 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.193 0.807 32 H 0.198 0.802 33 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -7.228 -8.042 -7.548 13.187 hybrid contribution -0.244 -0.075 0.443 0.511 sum -7.472 -8.117 -7.105 13.122 Atomic orbital electron populations 1.22011 0.97452 0.99970 1.00466 1.20765 0.93013 0.92406 0.89172 1.21952 0.99605 0.97678 1.00430 1.43864 1.64306 1.19260 1.01898 1.18855 0.96438 1.33281 0.88675 0.93626 1.25570 0.94462 1.00511 1.01276 1.70080 0.99974 1.52975 1.32339 0.85593 0.77818 0.76560 0.82681 1.19982 1.21976 1.21871 1.19782 0.91870 0.81663 1.00909 1.22585 0.96876 0.94994 0.86839 1.67750 1.14912 1.09798 1.28247 1.23453 0.91769 0.91558 1.00658 1.22423 1.02087 1.02585 0.91426 1.21841 0.94274 0.92787 1.00680 1.22017 1.03416 0.99531 0.88021 1.98315 1.92732 1.81794 1.29959 0.94765 0.91409 0.94696 0.91497 0.95112 0.91533 0.94364 0.94154 0.90764 0.93107 0.80732 0.80235 0.81288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.24 9.25 71.98 0.67 -4.57 16 2 C 0.15 6.34 3.15 44.99 0.14 6.48 16 3 C -0.14 -5.60 9.15 71.98 0.66 -4.94 16 4 N -0.57 -28.34 2.35 -682.35 -1.60 -29.95 16 5 C -0.24 -13.28 8.00 84.03 0.67 -12.61 16 6 H 0.05 2.58 7.03 -2.91 -0.02 2.56 16 7 C -0.02 -1.15 4.95 84.86 0.42 -0.73 16 8 N -0.91 -53.64 11.47 21.65 0.25 -53.39 16 9 Si 0.94 46.54 29.61 68.60 2.03 48.57 16 10 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 11 H -0.29 -14.60 7.11 99.48 0.71 -13.90 16 12 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 13 C 0.18 8.97 5.18 85.63 0.44 9.42 16 14 C 0.13 5.40 6.37 42.57 0.27 5.67 16 15 N -0.50 -21.15 10.27 -183.80 -1.89 -23.04 16 16 C 0.08 2.59 11.18 84.69 0.95 3.54 16 17 C -0.17 -3.93 10.11 22.36 0.23 -3.71 16 18 C -0.07 -1.81 9.98 22.49 0.22 -1.59 16 19 C -0.10 -3.41 6.34 22.42 0.14 -3.27 16 20 Cl -0.06 -1.76 24.97 -2.72 -0.07 -1.83 16 21 H 0.03 1.38 7.13 -2.39 -0.02 1.36 16 22 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 23 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.07 2.62 5.48 -2.39 -0.01 2.61 16 25 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.04 1.69 7.44 -2.39 -0.02 1.67 16 28 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 29 H 0.07 4.22 5.51 -2.39 -0.01 4.21 16 30 H 0.05 2.35 6.64 -2.39 -0.02 2.33 16 31 H 0.18 4.33 8.06 -2.91 -0.02 4.31 16 32 H 0.18 2.55 8.06 -2.91 -0.02 2.53 16 33 H 0.17 3.14 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -65.44 287.94 4.64 -60.80 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: 1.10 Total: 5.14 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: 4.81 Total: -6.32 kcal Atomic # 7 Polarization: -103.13 SS G_CDS: -3.24 Total: -106.37 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -0.07 Total: -1.83 kcal Total: -65.44 4.64 -60.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703853601.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.495 kcal (2) G-P(sol) polarization free energy of solvation -65.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds