Wall clock time and date at job start Mon Mar 30 2020 06:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47023 * 2 1 4 4 C 1.46500 * 120.00040 * 270.00046 * 3 2 1 5 5 C 1.50692 * 109.47206 * 269.99771 * 4 3 2 6 6 H 1.08008 * 120.00184 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00152 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99967 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 119.99740 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.46990 * 90.00185 * 9 7 5 11 11 H 1.48501 * 109.47116 * 209.99994 * 9 7 5 12 12 H 1.48494 * 109.47438 * 330.00283 * 9 7 5 13 13 C 1.39715 * 120.00244 * 90.00124 * 3 2 1 14 14 C 1.39312 * 120.48695 * 359.97438 * 13 3 2 15 15 C 1.38497 * 118.35565 * 179.74757 * 14 13 3 16 16 C 1.38279 * 119.23901 * 0.25810 * 15 14 13 17 17 C 1.50702 * 119.53177 * 180.02562 * 16 15 14 18 18 Cl 1.80295 * 109.47460 * 89.99847 * 17 16 15 19 19 N 1.31850 * 120.92894 * 359.97290 * 16 15 14 20 20 C 1.31819 * 121.80222 * 0.02562 * 19 16 15 21 21 H 1.09007 * 109.46970 * 299.99741 * 1 2 3 22 22 H 1.08996 * 109.47257 * 59.99853 * 1 2 3 23 23 H 1.08996 * 109.47053 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47122 * 239.99985 * 2 1 3 25 25 H 1.09004 * 109.47105 * 119.99863 * 2 1 3 26 26 H 1.08996 * 109.47262 * 30.00440 * 4 3 2 27 27 H 1.09007 * 109.47347 * 150.00109 * 4 3 2 28 28 H 0.96995 * 119.99964 * 180.02562 * 8 7 5 29 29 H 1.08002 * 120.82642 * 0.03145 * 14 13 3 30 30 H 1.07993 * 120.38147 * 180.23377 * 15 14 13 31 31 H 1.09002 * 109.46871 * 209.99898 * 17 16 15 32 32 H 1.08996 * 109.47088 * 329.99559 * 17 16 15 33 33 H 1.07998 * 119.67436 * 179.97438 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1490 2.3898 -2.8780 8 7 5.3910 2.1827 -3.2579 9 14 3.0126 3.4352 -3.9292 10 1 3.1161 4.8555 -3.5081 11 1 3.4055 3.3120 -5.3560 12 1 1.6130 2.9693 -3.7592 13 6 2.2512 2.0399 1.2099 14 6 2.0220 1.3931 2.4223 15 6 2.2726 2.0858 3.5951 16 6 2.7332 3.3877 3.5253 17 6 3.0086 4.1475 4.7973 18 17 4.7208 3.8832 5.2965 19 7 2.9357 3.9734 2.3615 20 6 2.7100 3.3507 1.2218 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.5816 1.6878 -2.0283 27 1 2.0955 3.1411 -1.1384 28 1 5.7170 2.5732 -4.0837 29 1 1.6622 0.3750 2.4471 30 1 2.1099 1.6147 4.5532 31 1 2.8392 5.2110 4.6292 32 1 2.3421 3.7932 5.5837 33 1 2.8873 3.8636 0.2881 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705966062.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:21 Heat of formation + Delta-G solvation = 7.535676 kcal Electronic energy + Delta-G solvation = -16433.223111 eV Core-core repulsion = 13711.833981 eV Total energy + Delta-G solvation = -2721.389130 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.23385 -38.31200 -36.77395 -34.91562 -33.25187 -32.93516 -31.80907 -29.37543 -27.09580 -25.27812 -23.75509 -23.35149 -21.33395 -19.08532 -18.36444 -17.66991 -16.73567 -16.26792 -15.92998 -15.55719 -15.21511 -14.75791 -14.67842 -14.51580 -14.24850 -13.76860 -13.62441 -13.50613 -13.23903 -12.93245 -12.57235 -12.40301 -12.11173 -11.81837 -11.74966 -11.48381 -11.29254 -11.07626 -10.83937 -10.34259 -10.29258 -8.34795 -8.15268 -6.40744 0.29056 0.46617 1.34641 1.36005 1.45263 1.61644 2.29626 2.32539 2.99909 3.07981 3.43054 3.79708 3.98202 4.08689 4.17951 4.34484 4.40797 4.47356 4.57201 4.67602 4.74060 4.82823 4.83623 4.95912 5.04969 5.19498 5.26698 5.37720 5.44107 5.73154 6.03578 6.47501 6.61619 6.65872 7.20672 7.24652 8.82793 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.020632 B = 0.006226 C = 0.005241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.770186 B = 4496.200365 C = 5340.765179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.112 3.888 3 N -0.604 5.604 4 C 0.229 3.771 5 C -0.538 4.538 6 H 0.026 0.974 7 C 0.013 3.987 8 N -0.945 5.945 9 Si 0.944 3.056 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.238 1.238 13 C 0.183 3.817 14 C -0.171 4.171 15 C -0.091 4.091 16 C 0.007 3.993 17 C 0.043 3.957 18 Cl -0.202 7.202 19 N -0.453 5.453 20 C 0.004 3.996 21 H 0.058 0.942 22 H 0.046 0.954 23 H 0.088 0.912 24 H 0.065 0.935 25 H 0.083 0.917 26 H 0.043 0.957 27 H 0.030 0.970 28 H 0.268 0.732 29 H 0.157 0.843 30 H 0.170 0.830 31 H 0.106 0.894 32 H 0.142 0.858 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.385 -1.206 13.843 18.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.011 4.011 3 N -0.310 5.310 4 C 0.107 3.893 5 C -0.577 4.577 6 H 0.044 0.956 7 C -0.185 4.185 8 N -0.585 5.585 9 Si 0.766 3.234 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.161 1.161 13 C 0.074 3.926 14 C -0.202 4.202 15 C -0.112 4.112 16 C -0.133 4.133 17 C -0.020 4.020 18 Cl -0.176 7.176 19 N -0.163 5.163 20 C -0.159 4.159 21 H 0.078 0.922 22 H 0.065 0.935 23 H 0.106 0.894 24 H 0.083 0.917 25 H 0.101 0.899 26 H 0.061 0.939 27 H 0.048 0.952 28 H 0.077 0.923 29 H 0.175 0.825 30 H 0.187 0.813 31 H 0.125 0.875 32 H 0.160 0.840 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.880 -0.456 13.528 18.010 hybrid contribution 0.297 -0.370 -1.129 1.225 sum -11.583 -0.826 12.399 16.988 Atomic orbital electron populations 1.22123 0.94371 1.03125 1.01935 1.21558 0.95179 0.81512 1.02831 1.46862 1.67735 1.13661 1.02710 1.19405 0.94399 0.93093 0.82405 1.21630 0.97108 1.32203 1.06766 0.95596 1.25861 0.96512 0.97299 0.98819 1.70064 1.17610 1.46434 1.24402 0.85771 0.80391 0.79372 0.77833 1.19295 1.20684 1.16133 1.19157 0.92913 0.92720 0.87827 1.21358 1.06977 1.01804 0.90012 1.21974 0.95949 0.93562 0.99679 1.21010 1.05105 0.94380 0.92832 1.23063 0.82342 1.02581 0.94013 1.98728 1.28834 1.97736 1.92324 1.67147 1.12145 1.38613 0.98349 1.22172 1.05093 0.92678 0.95996 0.92250 0.93473 0.89369 0.91660 0.89869 0.93928 0.95177 0.92319 0.82540 0.81302 0.87511 0.84021 0.84823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.60 10.24 71.98 0.74 -2.87 16 2 C 0.11 3.34 5.91 86.38 0.51 3.86 16 3 N -0.60 -23.09 2.59 -701.22 -1.82 -24.91 16 4 C 0.23 10.26 4.00 85.63 0.34 10.60 16 5 C -0.54 -30.07 9.94 25.60 0.25 -29.82 16 6 H 0.03 1.66 8.06 -2.91 -0.02 1.64 16 7 C 0.01 0.76 5.47 84.65 0.46 1.23 16 8 N -0.95 -58.58 13.96 21.45 0.30 -58.28 16 9 Si 0.94 42.16 27.47 68.60 1.88 44.04 16 10 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.24 -9.51 6.54 99.48 0.65 -8.86 16 13 C 0.18 6.76 6.57 38.30 0.25 7.01 16 14 C -0.17 -4.92 9.30 22.59 0.21 -4.71 16 15 C -0.09 -2.30 9.73 22.34 0.22 -2.08 16 16 C 0.01 0.20 6.16 42.57 0.26 0.46 16 17 C 0.04 0.92 6.94 71.24 0.49 1.42 16 18 Cl -0.20 -5.32 29.13 -2.72 -0.08 -5.40 16 19 N -0.45 -17.01 10.26 -183.34 -1.88 -18.89 16 20 C 0.00 0.18 10.38 84.85 0.88 1.06 16 21 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 22 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.06 2.14 8.07 -2.39 -0.02 2.12 16 25 H 0.08 2.16 6.25 -2.38 -0.01 2.14 16 26 H 0.04 1.82 7.13 -2.39 -0.02 1.80 16 27 H 0.03 1.35 5.64 -2.38 -0.01 1.33 16 28 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 29 H 0.16 3.56 6.27 -2.91 -0.02 3.54 16 30 H 0.17 2.76 8.06 -2.91 -0.02 2.74 16 31 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.14 1.88 8.07 -2.39 -0.02 1.86 16 33 H 0.13 6.02 6.15 -2.91 -0.02 6.00 16 Total: -1.00 -68.92 293.38 4.08 -64.84 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 1.05 Total: 12.45 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: 4.62 Total: -13.85 kcal Atomic # 7 Polarization: -98.68 SS G_CDS: -3.40 Total: -102.08 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 1.88 Total: 44.04 kcal Atomic # 17 Polarization: -5.32 SS G_CDS: -0.08 Total: -5.40 kcal Total: -68.92 4.08 -64.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705966062.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.377 kcal (2) G-P(sol) polarization free energy of solvation -68.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds