Wall clock time and date at job start Mon Mar 30 2020 06:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.46972 * 2 1 4 4 C 1.53001 * 109.47468 * 120.00531 * 2 1 3 5 5 C 1.50701 * 109.47301 * 185.00004 * 4 2 1 6 6 H 1.08004 * 119.99395 * 0.02562 * 5 4 2 7 7 C 1.37868 * 120.00183 * 179.72074 * 5 4 2 8 8 N 1.31517 * 120.00042 * 0.27504 * 7 5 4 9 9 Si 1.86798 * 120.00093 * 180.27555 * 7 5 4 10 10 H 1.48495 * 109.47070 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47142 * 120.00256 * 9 7 5 12 12 H 1.48505 * 109.47181 * 239.99970 * 9 7 5 13 13 O 1.42901 * 109.46882 * 240.00578 * 2 1 3 14 14 C 1.35949 * 117.00481 * 84.95371 * 13 2 1 15 15 C 1.38665 * 120.06361 * 354.51169 * 14 13 2 16 16 C 1.38173 * 119.97569 * 179.97438 * 15 14 13 17 17 C 1.38270 * 120.09404 * 359.97438 * 16 15 14 18 18 C 1.50693 * 119.93470 * 180.02562 * 17 16 15 19 19 O 1.42898 * 109.47490 * 89.99819 * 18 17 16 20 20 C 1.38255 * 120.12262 * 359.97438 * 17 16 15 21 21 C 1.38334 * 120.03421 * 359.79370 * 20 17 16 22 22 F 1.35091 * 120.04991 * 180.23331 * 21 20 17 23 23 H 1.09008 * 109.46838 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47010 * 299.99609 * 1 2 3 25 25 H 1.08998 * 109.47753 * 59.99948 * 1 2 3 26 26 H 1.08998 * 109.47215 * 64.99897 * 4 2 1 27 27 H 1.08997 * 109.46789 * 304.99853 * 4 2 1 28 28 H 0.97002 * 120.00374 * 179.97438 * 8 7 5 29 29 H 1.08001 * 120.00999 * 0.02562 * 15 14 13 30 30 H 1.08000 * 119.95918 * 180.02562 * 16 15 14 31 31 H 1.09005 * 109.46764 * 209.99446 * 18 17 16 32 32 H 1.08994 * 109.47738 * 329.99244 * 18 17 16 33 33 H 0.96702 * 114.00276 * 179.97438 * 19 18 17 34 34 H 1.08005 * 119.98367 * 180.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5420 -0.6150 1.3126 6 1 4.0789 -0.0854 0.5394 7 6 4.2300 -1.1883 2.3608 8 7 3.5761 -1.8326 3.3026 9 14 6.0910 -1.0498 2.4435 10 1 6.5826 -0.2805 1.2724 11 1 6.4802 -0.3496 3.6939 12 1 6.6896 -2.4088 2.4303 13 8 2.0062 -0.6735 -1.1669 14 6 2.1115 0.0627 -2.3049 15 6 1.6578 1.3728 -2.3291 16 6 1.7662 2.1197 -3.4865 17 6 2.3271 1.5627 -4.6210 18 6 2.4441 2.3807 -5.8812 19 8 3.6970 3.0677 -5.8887 20 6 2.7817 0.2572 -4.6010 21 6 2.6802 -0.4936 -3.4436 22 9 3.1286 -1.7678 -3.4223 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.7517 -1.7716 1.2054 27 1 1.6055 -0.2619 2.1369 28 1 4.0601 -2.2363 4.0399 29 1 1.2206 1.8095 -1.4433 30 1 1.4131 3.1401 -3.5050 31 1 2.3854 1.7226 -6.7482 32 1 1.6317 3.1063 -5.9202 33 1 3.8409 3.6149 -6.6729 34 1 3.2199 -0.1754 -5.4883 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709961775.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:03 Heat of formation + Delta-G solvation = -142.097429 kcal Electronic energy + Delta-G solvation = -18530.863577 eV Core-core repulsion = 15342.356742 eV Total energy + Delta-G solvation = -3188.506835 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.81221 -41.18339 -39.19216 -37.19496 -35.50532 -33.54834 -31.92117 -31.32966 -29.41183 -26.70817 -25.24579 -24.34670 -22.72751 -21.53171 -19.38485 -18.58149 -18.30412 -17.84469 -17.77017 -16.86571 -16.60408 -16.06553 -15.72661 -15.49588 -15.23397 -15.03641 -14.40477 -14.00546 -13.77122 -13.62954 -13.54024 -13.40929 -13.15334 -12.76645 -12.69611 -12.44787 -12.31718 -11.89913 -11.80915 -11.36606 -11.11617 -10.89749 -10.62830 -9.93691 -9.11813 -8.25321 -6.34295 0.12123 0.18125 1.33864 1.35721 1.48413 2.24006 2.36835 2.49573 3.08923 3.22830 3.57530 3.74276 3.90698 4.06850 4.14823 4.21145 4.25819 4.36848 4.47721 4.53856 4.63706 4.78661 4.94871 4.95339 5.06685 5.16474 5.19860 5.33777 5.41345 5.45944 5.71832 5.75927 6.14005 6.52504 6.77025 7.01121 7.33413 8.86559 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.022763 B = 0.005631 C = 0.005168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.748353 B = 4971.640999 C = 5417.179391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.091 3.909 3 H 0.072 0.928 4 C 0.027 3.973 5 C -0.533 4.533 6 H 0.046 0.954 7 C 0.006 3.994 8 N -0.928 5.928 9 Si 0.958 3.042 10 H -0.271 1.271 11 H -0.269 1.269 12 H -0.278 1.278 13 O -0.319 6.319 14 C 0.091 3.909 15 C -0.195 4.195 16 C -0.059 4.059 17 C -0.120 4.120 18 C 0.127 3.873 19 O -0.593 6.593 20 C -0.093 4.093 21 C 0.020 3.980 22 F -0.153 7.153 23 H 0.054 0.946 24 H 0.086 0.914 25 H 0.076 0.924 26 H -0.004 1.004 27 H 0.032 0.968 28 H 0.265 0.735 29 H 0.152 0.848 30 H 0.165 0.835 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.401 0.599 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.761 11.304 -18.641 22.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.036 3.964 3 H 0.090 0.910 4 C -0.010 4.010 5 C -0.571 4.571 6 H 0.065 0.935 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.783 3.217 10 H -0.196 1.196 11 H -0.194 1.194 12 H -0.204 1.204 13 O -0.233 6.233 14 C 0.044 3.956 15 C -0.213 4.213 16 C -0.077 4.077 17 C -0.120 4.120 18 C 0.050 3.950 19 O -0.403 6.403 20 C -0.112 4.112 21 C 0.000 4.000 22 F -0.132 7.132 23 H 0.073 0.927 24 H 0.105 0.895 25 H 0.095 0.905 26 H 0.015 0.985 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.169 0.831 30 H 0.182 0.818 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.251 0.749 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.625 10.655 -17.868 21.551 hybrid contribution 0.948 -0.473 0.218 1.081 sum -4.678 10.182 -17.650 20.906 Atomic orbital electron populations 1.22321 0.93507 1.02904 1.03666 1.22724 0.94416 0.96283 0.83007 0.91000 1.19137 0.95452 0.95126 0.91238 1.21462 0.93399 1.34655 1.07604 0.93529 1.25824 1.03409 0.94757 0.95255 1.70059 1.37433 1.36767 1.12621 0.85506 0.79851 0.78084 0.78297 1.19596 1.19380 1.20414 1.86259 1.80941 1.39104 1.17030 1.19641 0.96511 0.92695 0.86797 1.21463 1.05922 0.92289 1.01655 1.21280 0.95777 1.00371 0.90310 1.19735 1.01562 0.93243 0.97500 1.20949 0.86616 0.94523 0.92922 1.86546 1.38150 1.66315 1.49260 1.21086 0.99447 0.94639 0.96004 1.17489 1.06311 0.81136 0.95018 1.91429 1.87715 1.36905 1.97145 0.92727 0.89499 0.90505 0.98515 0.95040 0.92580 0.83070 0.81763 0.90809 0.89825 0.74869 0.82425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.49 9.17 71.98 0.66 -4.83 16 2 C 0.09 3.87 2.17 30.59 0.07 3.94 16 3 H 0.07 2.89 6.31 -2.39 -0.02 2.88 16 4 C 0.03 1.47 4.68 29.85 0.14 1.61 16 5 C -0.53 -31.76 8.88 25.60 0.23 -31.53 16 6 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 7 C 0.01 0.33 5.46 84.65 0.46 0.80 16 8 N -0.93 -57.29 13.29 21.44 0.28 -57.01 16 9 Si 0.96 46.52 29.54 68.60 2.03 48.55 16 10 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 13 O -0.32 -14.75 9.42 -92.97 -0.88 -15.63 16 14 C 0.09 3.49 6.61 22.53 0.15 3.64 16 15 C -0.19 -5.83 8.24 22.36 0.18 -5.64 16 16 C -0.06 -1.38 9.69 22.26 0.22 -1.16 16 17 C -0.12 -2.74 5.51 -19.86 -0.11 -2.85 16 18 C 0.13 1.82 7.17 71.23 0.51 2.33 16 19 O -0.59 -9.99 13.64 -148.98 -2.03 -12.02 16 20 C -0.09 -2.57 9.67 22.30 0.22 -2.35 16 21 C 0.02 0.74 7.31 22.45 0.16 0.90 16 22 F -0.15 -6.35 17.11 44.97 0.77 -5.58 16 23 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 24 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 25 H 0.08 2.09 6.91 -2.39 -0.02 2.08 16 26 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 27 H 0.03 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 29 H 0.15 4.11 5.43 -2.91 -0.02 4.09 16 30 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 31 H 0.07 0.78 8.08 -2.38 -0.02 0.76 16 32 H 0.08 0.75 8.08 -2.39 -0.02 0.73 16 33 H 0.40 2.37 9.12 -74.06 -0.68 1.70 16 34 H 0.16 3.51 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -75.43 297.56 3.50 -71.93 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: 0.44 Total: 4.92 kcal Atomic # 6 Polarization: -38.04 SS G_CDS: 2.89 Total: -35.15 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: 0.28 Total: -57.01 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -2.91 Total: -27.66 kcal Atomic # 9 Polarization: -6.35 SS G_CDS: 0.77 Total: -5.58 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -75.43 3.50 -71.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709961775.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.165 kcal (2) G-P(sol) polarization free energy of solvation -75.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds